-
1
-
-
0016671420
-
Model of myoglobin self-organization
-
Ptitsyn, O.B., Rashin, A.A. Model of myoglobin self-organization. Biophys. Chem. 3:1-20, 1975.
-
(1975)
Biophys. Chem.
, vol.3
, pp. 1-20
-
-
Ptitsyn, O.B.1
Rashin, A.A.2
-
2
-
-
0018791941
-
Protein folding - Evaluation of some simple rules for the assembly of helices into tertiary structures with myoglobin as an example
-
Cohen, F.E., Richmond, T.J., Richards, F.M. Protein folding - evaluation of some simple rules for the assembly of helices into tertiary structures with myoglobin as an example. J. Mol. Biol. 132:275-288, 1979.
-
(1979)
J. Mol. Biol.
, vol.132
, pp. 275-288
-
-
Cohen, F.E.1
Richmond, T.J.2
Richards, F.M.3
-
3
-
-
0019317327
-
Analysis and prediction of protein beta-sheet structures by a combinatorial approach
-
Cohen, F.E., Sternberg, M.J.E., Taylor, W.R. Analysis and prediction of protein beta-sheet structures by a combinatorial approach. Nature 285:378-382, 1980.
-
(1980)
Nature
, vol.285
, pp. 378-382
-
-
Cohen, F.E.1
Sternberg, M.J.E.2
Taylor, W.R.3
-
4
-
-
0019505121
-
Analysis of the structure of protein beta-sheet sandwiches
-
Cohen, F.E., Sternberg, M.J.E., Taylor, W.R. Analysis of the structure of protein beta-sheet sandwiches. J. Mol. Biol. 148:253-272, 1981.
-
(1981)
J. Mol. Biol.
, vol.148
, pp. 253-272
-
-
Cohen, F.E.1
Sternberg, M.J.E.2
Taylor, W.R.3
-
5
-
-
0019997016
-
Analysis and prediction of the packing of alpha-helices against a beta-sheet in the tertiary structure of globular proteins
-
Cohen, F.E., Sternberg, M.J.E., Taylor, W.R. Analysis and prediction of the packing of alpha-helices against a beta-sheet in the tertiary structure of globular proteins J. Mol. Biol. 156:821-862, 1982.
-
(1982)
J. Mol. Biol.
, vol.156
, pp. 821-862
-
-
Cohen, F.E.1
Sternberg, M.J.E.2
Taylor, W.R.3
-
6
-
-
0026325233
-
Towards protein tertiary fold prediction using distance and motif constraints
-
Taylor, W.R. Towards protein tertiary fold prediction using distance and motif constraints. Protein Eng. 4:853-870, 1991.
-
(1991)
Protein Eng.
, vol.4
, pp. 853-870
-
-
Taylor, W.R.1
-
7
-
-
0027168790
-
Global folding of proteins from a limited number of distance constraints
-
Smith-Brown, M.J., Kominos, D., Levy, R.M. Global folding of proteins from a limited number of distance constraints. Protein Eng. 6:605-614, 1993.
-
(1993)
Protein Eng.
, vol.6
, pp. 605-614
-
-
Smith-Brown, M.J.1
Kominos, D.2
Levy, R.M.3
-
8
-
-
0000335209
-
Hierarchical algorithm for computer modeling of protein tertiary structure: Folding of myoglobin to 6.2Å resolution
-
Gunn, J.R., Monge, A., Friesner, R.A., Marshall, C.H. Hierarchical algorithm for computer modeling of protein tertiary structure: Folding of myoglobin to 6.2Å resolution. J. Phys. Chem. 98:702-711, 1994.
-
(1994)
J. Phys. Chem.
, vol.98
, pp. 702-711
-
-
Gunn, J.R.1
Monge, A.2
Friesner, R.A.3
Marshall, C.H.4
-
9
-
-
0028283339
-
An algorithm to generate low-resolution protein tertiary structures from knowledge of secondary structure
-
Monge, A., Friesner, R.A., Honig, B. An algorithm to generate low-resolution protein tertiary structures from knowledge of secondary structure. Proc. Natl. Acad. Sci. U.S.A. 91:5027-5029, 1994.
-
(1994)
Proc. Natl. Acad. Sci. U.S.A.
, vol.91
, pp. 5027-5029
-
-
Monge, A.1
Friesner, R.A.2
Honig, B.3
-
10
-
-
0028897718
-
Computer modeling of protein folding: Conformational and energetic analysis of reduced and detailed protein models
-
Monge, A., Lathrop, E.J.P., Gunn, J.R., Shenkin, P.S., Friesner, R.A. Computer modeling of protein folding: Conformational and energetic analysis of reduced and detailed protein models. J. Mol. Biol. 247:995-1012, 1995.
-
(1995)
J. Mol. Biol.
, vol.247
, pp. 995-1012
-
-
Monge, A.1
Lathrop, E.J.P.2
Gunn, J.R.3
Shenkin, P.S.4
Friesner, R.A.5
-
12
-
-
0001193711
-
The effects of internal constraints on the configurations of chain molecules
-
Chan, H.S., Dill, K.A. The effects of internal constraints on the configurations of chain molecules. J. Chem. Phys. 92:3118-3135, 1990.
-
(1990)
J. Chem. Phys.
, vol.92
, pp. 3118-3135
-
-
Chan, H.S.1
Dill, K.A.2
-
14
-
-
0027992140
-
The origins of protein secondary structure
-
Hunt, N.G., Gregoret, L.M., Cohen, F.E. The origins of protein secondary structure. J. Mol. Biol. 241:214-225, 1994.
-
(1994)
J. Mol. Biol.
, vol.241
, pp. 214-225
-
-
Hunt, N.G.1
Gregoret, L.M.2
Cohen, F.E.3
-
15
-
-
0028124611
-
Does compactness induce secondary structure in proteins?
-
Yee, D.P., Chan, H.S., Havel, T.F., Dill, K.A. Does compactness induce secondary structure in proteins? J. Mol. Biol. 241:557-573, 1994.
-
(1994)
J. Mol. Biol.
, vol.241
, pp. 557-573
-
-
Yee, D.P.1
Chan, H.S.2
Havel, T.F.3
Dill, K.A.4
-
16
-
-
0025363984
-
Deciphering the message in protein sequences: Tolerance to amino acid substitutions
-
Bowie, J.U., Reidhaar-Olson, J.F., Lim, W.A., Sauer, R.T. Deciphering the message in protein sequences: Tolerance to amino acid substitutions. Science 247:1306-1310, 1990.
-
(1990)
Science
, vol.247
, pp. 1306-1310
-
-
Bowie, J.U.1
Reidhaar-Olson, J.F.2
Lim, W.A.3
Sauer, R.T.4
-
17
-
-
0015222647
-
The interpretation of protein structures: Estimation of static accessibility
-
Lee, B.K., Richards, F.M. The interpretation of protein structures: Estimation of static accessibility. J. Mol. Biol. 55:379-400, 1971.
-
(1971)
J. Mol. Biol.
, vol.55
, pp. 379-400
-
-
Lee, B.K.1
Richards, F.M.2
-
18
-
-
0018784438
-
Surface and inside volumes in globular proteins
-
Janin, J. Surface and inside volumes in globular proteins. Nature 277:491-492, 1979.
-
(1979)
Nature
, vol.277
, pp. 491-492
-
-
Janin, J.1
-
19
-
-
0000338489
-
Comparison of solvent-inaccessible cores of homologous proteins: Definitions useful for protein modelling
-
Hubbard, T.J.P., Blundell, T.L. Comparison of solvent-inaccessible cores of homologous proteins: Definitions useful for protein modelling. Protein Eng. 1:159-171, 1987.
-
(1987)
Protein Eng.
, vol.1
, pp. 159-171
-
-
Hubbard, T.J.P.1
Blundell, T.L.2
-
20
-
-
0023645203
-
Interior and surface of monomeric proteins
-
Miller, S., Janin, J., Lesk, A.M., Chothia, C. Interior and surface of monomeric proteins. J. Mol. Biol. 196:641-656, 1987.
-
(1987)
J. Mol. Biol.
, vol.196
, pp. 641-656
-
-
Miller, S.1
Janin, J.2
Lesk, A.M.3
Chothia, C.4
-
21
-
-
0023463401
-
Distribution of accessible surfaces of amino acids in globular proteins
-
Lawrence, C., Auger, I., Mannella, C. Distribution of accessible surfaces of amino acids in globular proteins. Proteins 2:153-161, 1987.
-
(1987)
Proteins
, vol.2
, pp. 153-161
-
-
Lawrence, C.1
Auger, I.2
Mannella, C.3
-
22
-
-
0025039476
-
Predicting surface exposure of amino acids from protein sequences
-
Holbrook, S.R., Muskal, S.M., Kim, S.-H. Predicting surface exposure of amino acids from protein sequences. Protein Eng. 3:659-665, 1990.
-
(1990)
Protein Eng.
, vol.3
, pp. 659-665
-
-
Holbrook, S.R.1
Muskal, S.M.2
Kim, S.-H.3
-
23
-
-
9344253088
-
Predicting surface structures of proteins by neural networks
-
Bohr, H., Goldstein, R A., Wolynes, P.G. Predicting surface structures of proteins by neural networks. AMSE Periodicals C 31:53-56, 1992.
-
(1992)
AMSE Periodicals C
, vol.31
, pp. 53-56
-
-
Bohr, H.1
Goldstein, R.A.2
Wolynes, P.G.3
-
24
-
-
0028239337
-
Use of amino acid environment-dependent substitution tables and conformational propensities in structure prediction from aligned sequences of homologous proteins. I. Solvent accessibility classes
-
Wako, H., Blundell, T. Use of amino acid environment-dependent substitution tables and conformational propensities in structure prediction from aligned sequences of homologous proteins. I. Solvent accessibility classes. J. Mol. Biol. 238:682-692, 1994.
-
(1994)
J. Mol. Biol.
, vol.238
, pp. 682-692
-
-
Wako, H.1
Blundell, T.2
-
25
-
-
0028109886
-
Conservation and prediction of solvent accessibility in protein families
-
Rost, B., Sander, C. Conservation and prediction of solvent accessibility in protein families. Proteins 20:216-226, 1994.
-
(1994)
Proteins
, vol.20
, pp. 216-226
-
-
Rost, B.1
Sander, C.2
-
26
-
-
0021118508
-
Principles that determine the structure of proteins
-
Chothia, C. Principles that determine the structure of proteins. Annu. Rev. Biochem. 53:537-572, 1984.
-
(1984)
Annu. Rev. Biochem.
, vol.53
, pp. 537-572
-
-
Chothia, C.1
-
27
-
-
0022706389
-
The relation between the divergence of sequence and structure in proteins
-
Chothia, C., Lesk, A.M. The relation between the divergence of sequence and structure in proteins. EMBO J. 5:823-826, 1986.
-
(1986)
EMBO J.
, vol.5
, pp. 823-826
-
-
Chothia, C.1
Lesk, A.M.2
-
28
-
-
0025026058
-
Comparison of the structures of globins and phycocyanins: Evidence for evolutionary relationship
-
Pastore, A., Lesk, A.M. Comparison of the structures of globins and phycocyanins: Evidence for evolutionary relationship. Proteins 8:133-155, 1990.
-
(1990)
Proteins
, vol.8
, pp. 133-155
-
-
Pastore, A.1
Lesk, A.M.2
-
29
-
-
0030006663
-
Constructing amino acid residue substitution classes maximally indicative of local protein structure
-
Thompson, M.J., Goldstein, R.A. Constructing amino acid residue substitution classes maximally indicative of local protein structure. Proteins 25:28-37, 1996.
-
(1996)
Proteins
, vol.25
, pp. 28-37
-
-
Thompson, M.J.1
Goldstein, R.A.2
-
30
-
-
0028815464
-
Protein structure prediction: Recognition of primary, secondary, and tertiary structural features from amino acid sequence
-
Eisenhaber, F., Persson, B., Argos, P. Protein structure prediction: Recognition of primary, secondary, and tertiary structural features from amino acid sequence. Crit. Rev. Biochem. Molec. Biol. 30:1-94, 1995.
-
(1995)
Crit. Rev. Biochem. Molec. Biol.
, vol.30
, pp. 1-94
-
-
Eisenhaber, F.1
Persson, B.2
Argos, P.3
-
31
-
-
0028116101
-
Quantification of tertiary structural conservation despite primary sequence drift in the globin fold
-
Aronson, H.E.G., Royer, W.E., Jr., Hendrickson, W.A. Quantification of tertiary structural conservation despite primary sequence drift in the globin fold. Protein Sci. 3:1706-1711, 1994.
-
(1994)
Protein Sci.
, vol.3
, pp. 1706-1711
-
-
Aronson, H.E.G.1
Royer Jr., W.E.2
Hendrickson, W.A.3
-
32
-
-
0014062165
-
Use of helical wheels to represent the structures of proteins and to identify segments with helical potential
-
Schiffer, M., Edmundson, A.B. Use of helical wheels to represent the structures of proteins and to identify segments with helical potential. Biophys. J. 7:121-135, 1967.
-
(1967)
Biophys. J.
, vol.7
, pp. 121-135
-
-
Schiffer, M.1
Edmundson, A.B.2
-
33
-
-
0015530828
-
Protein folding
-
Kuntz, I.D. Protein folding. J. Am. Chem. Soc. 94:4009-4012, 1972.
-
(1972)
J. Am. Chem. Soc.
, vol.94
, pp. 4009-4012
-
-
Kuntz, I.D.1
-
34
-
-
0016162558
-
Algorithms for prediction of α-helical and β-structural regions in globular proteins
-
Lim, V. Algorithms for prediction of α-helical and β-structural regions in globular proteins. J. Mol. Biol. 88:873-894, 1974.
-
(1974)
J. Mol. Biol.
, vol.88
, pp. 873-894
-
-
Lim, V.1
-
35
-
-
0000929505
-
The hydrophobic moment detects periodicity in protein hydrophobicity
-
Eisenberg, D., Weiss, R.M., Terwilliger, T.C. The hydrophobic moment detects periodicity in protein hydrophobicity. Proc. Natl. Acad. Sci. U.S.A. 81:140-144, 1984.
-
(1984)
Proc. Natl. Acad. Sci. U.S.A.
, vol.81
, pp. 140-144
-
-
Eisenberg, D.1
Weiss, R.M.2
Terwilliger, T.C.3
-
36
-
-
0023645034
-
Hydrophobicity scales and computational techniques for detecting amphipathic structures in proteins
-
Cornette, J.L., Cease, K.B., Margalit, H., Spouge, J.L., Berzofsky, J.A., Delisi, C. Hydrophobicity scales and computational techniques for detecting amphipathic structures in proteins. J. Mol. Biol. 195:659-685, 1987.
-
(1987)
J. Mol. Biol.
, vol.195
, pp. 659-685
-
-
Cornette, J.L.1
Cease, K.B.2
Margalit, H.3
Spouge, J.L.4
Berzofsky, J.A.5
Delisi, C.6
-
37
-
-
0017798828
-
Prediction of chain turns in globular proteins on a hydrophobic basis
-
Rose, G.D. Prediction of chain turns in globular proteins on a hydrophobic basis. Nature 272:586-590, 1978.
-
(1978)
Nature
, vol.272
, pp. 586-590
-
-
Rose, G.D.1
-
38
-
-
0000448982
-
Prediction of protein antigenic determinants from amino acid sequences
-
Hopp, T.P., Woods, K.R. Prediction of protein antigenic determinants from amino acid sequences. Proc. Natl. Acad. Sci. U.S.A. 78:3824-3828, 1981.
-
(1981)
Proc. Natl. Acad. Sci. U.S.A.
, vol.78
, pp. 3824-3828
-
-
Hopp, T.P.1
Woods, K.R.2
-
39
-
-
0020475449
-
A simple method for displaying the hydropathic character of a protein
-
Kyte, J., Doolittle, R.F. A simple method for displaying the hydropathic character of a protein. J. Mol. Biol. 157:105-132, 1982.
-
(1982)
J. Mol. Biol.
, vol.157
, pp. 105-132
-
-
Kyte, J.1
Doolittle, R.F.2
-
41
-
-
0027477526
-
Structural analysis based on state-space modeling
-
Stultz, C.M., White, J.V., Smith, T.F. Structural analysis based on state-space modeling. Protein Sci. 2:305-314, 1993.
-
(1993)
Protein Sci.
, vol.2
, pp. 305-314
-
-
Stultz, C.M.1
White, J.V.2
Smith, T.F.3
-
42
-
-
0027174134
-
Prediction of protein secondary structure by the hidden Markov model
-
Asai, K., Haymizu, S., Handa, K. Prediction of protein secondary structure by the hidden Markov model. CABIOS 2:141-146, 1993.
-
(1993)
CABIOS
, vol.2
, pp. 141-146
-
-
Asai, K.1
Haymizu, S.2
Handa, K.3
-
43
-
-
0028181441
-
Hidden Markov models in computational biology
-
Krogh, A., Brown, M., Mian, I.S., Sjölander, K., Haussler, D. Hidden Markov models in computational biology. J. Mol. Biol. 235:1501-1531, 1994.
-
(1994)
J. Mol. Biol.
, vol.235
, pp. 1501-1531
-
-
Krogh, A.1
Brown, M.2
Mian, I.S.3
Sjölander, K.4
Haussler, D.5
-
44
-
-
0026682530
-
Predicting protein secondary structure using neural nets and statistical methods
-
Stolorz, P., Lapedes, A., Xia, Y. Predicting protein secondary structure using neural nets and statistical methods. J. Mol. Biol. 225:363-377, 1992.
-
(1992)
J. Mol. Biol.
, vol.225
, pp. 363-377
-
-
Stolorz, P.1
Lapedes, A.2
Xia, Y.3
-
45
-
-
0028924716
-
A Bayesian approach to sequence alignment algorithms for protein structure recognition
-
Los Alamitos, CA: IEEE Computer Society Press
-
Goldstein, R.A., Luthey-Schulten, Z.A., Wolynes, P.G. A Bayesian approach to sequence alignment algorithms for protein structure recognition. In: "Proceedings of the 27th Annual Hawaii International Conference on System Sciences." Los Alamitos, CA: IEEE Computer Society Press, 1994.
-
(1994)
Proceedings of the 27th Annual Hawaii International Conference on System Sciences
-
-
Goldstein, R.A.1
Luthey-Schulten, Z.A.2
Wolynes, P.G.3
-
46
-
-
0028205447
-
Enlarged representative set of protein structures
-
Hobohm, U., Sander, C. Enlarged representative set of protein structures. Protein Sci. 3:522-524, 1994.
-
(1994)
Protein Sci.
, vol.3
, pp. 522-524
-
-
Hobohm, U.1
Sander, C.2
-
47
-
-
0026030641
-
Database of homology-derived protein structures and the structural meaning of sequence alignment
-
Sander, C., Schneider, R. Database of homology-derived protein structures and the structural meaning of sequence alignment. Proteins 9:56-68, 1991.
-
(1991)
Proteins
, vol.9
, pp. 56-68
-
-
Sander, C.1
Schneider, R.2
-
48
-
-
0020997912
-
Dictionary of protein secondary structures: Pattern recognition of hydrogen-bonded and geometrical features
-
Kabsch, W., Sander, C. Dictionary of protein secondary structures: Pattern recognition of hydrogen-bonded and geometrical features. Biopolymers 22:2577-2637, 1983.
-
(1983)
Biopolymers
, vol.22
, pp. 2577-2637
-
-
Kabsch, W.1
Sander, C.2
-
49
-
-
0017411710
-
Protein data bank: A computer-based archival file for macromolecular structures
-
Bernstein, F.C., Koetzle, T.F., Williams, G.J.B., Meyer, E.F., Jr., Brice, M.D., Rodgers, J.R., Kennard, O., Shimanouchi, T., Tasumi, M. Protein data bank: A computer-based archival file for macromolecular structures. J. Mol. Biol. 112:535-542, 1977.
-
(1977)
J. Mol. Biol.
, vol.112
, pp. 535-542
-
-
Bernstein, F.C.1
Koetzle, T.F.2
Williams, G.J.B.3
Meyer Jr., E.F.4
Brice, M.D.5
Rodgers, J.R.6
Kennard, O.7
Shimanouchi, T.8
Tasumi, M.9
-
50
-
-
0002638513
-
Protein data bank
-
Allen, F.H., Bergerhoff, G., Sievers, R. (eds.). Bonn: Data Commission of the International Union of Crystallography
-
Abola, E.E., Bernstein, F.C., Bryant, S.H., Koetzle, T.F., Weng, J. Protein data bank. In: "Crystallographic Databases - Information Content, Software Systems, Scientific Applications." Allen, F.H., Bergerhoff, G., Sievers, R. (eds.). Bonn: Data Commission of the International Union of Crystallography. 1987:107-132.
-
(1987)
Crystallographic Databases - Information Content, Software Systems, Scientific Applications
, pp. 107-132
-
-
Abola, E.E.1
Bernstein, F.C.2
Bryant, S.H.3
Koetzle, T.F.4
Weng, J.5
-
51
-
-
0015866154
-
Environment and exposure to solvent of protein atoms: Lysozyme and insulin
-
Shrake, A., Rupley, J.A. Environment and exposure to solvent of protein atoms: Lysozyme and insulin. J. Mol. Biol. 79:351-371, 1973.
-
(1973)
J. Mol. Biol.
, vol.79
, pp. 351-371
-
-
Shrake, A.1
Rupley, J.A.2
-
52
-
-
0028300741
-
Combining evolutionary information and neural networks to predict protein secondary structure
-
Rost, B., Sander, C. Combining evolutionary information and neural networks to predict protein secondary structure. Proteins 19:55-72, 1994.
-
(1994)
Proteins
, vol.19
, pp. 55-72
-
-
Rost, B.1
Sander, C.2
-
53
-
-
0022412192
-
Hydrophobicity of amino acid residues in globular proteins
-
Rose, G., Geselowitz, A., Lesser, G., Lee, R., Zehfus, M. Hydrophobicity of amino acid residues in globular proteins. Science 229:834-838, 1985.
-
(1985)
Science
, vol.229
, pp. 834-838
-
-
Rose, G.1
Geselowitz, A.2
Lesser, G.3
Lee, R.4
Zehfus, M.5
-
54
-
-
0027291015
-
Prediction of protein secondary structure at better than 70% accuracy
-
Rost, B., Sander, C. Prediction of protein secondary structure at better than 70% accuracy. J. Mol. Biol. 232:584-599, 1993.
-
(1993)
J. Mol. Biol.
, vol.232
, pp. 584-599
-
-
Rost, B.1
Sander, C.2
|