ProteinChip® clinical proteomics: Computational challenges and solutions

BioTechniques

Volumn 32, Issue 3 SUPPL., 2002, Pages

  Fung, Eric T ^a   Enderwick, Cynthia ^a  

^a CIPHERGEN BIOSYSTEMS INC   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

BIOMARKERS; CHROMATOGRAPHIC ANALYSIS; COMPUTER AIDED ANALYSIS; DESORPTION; IONIZATION; MASS SPECTROMETRY; PROTEINS; STRATEGIC PLANNING;

MULTIVARIATE ANALYSIS;

BIOTECHNOLOGY;

BIOLOGICAL MARKER; PROTEOME;

ARTICLE; BIOINFORMATICS; CHROMATOGRAPHY; DNA MICROARRAY; INFORMATION PROCESSING; MASS SPECTROMETRY; MULTIVARIATE ANALYSIS; PROTEIN EXPRESSION; PROTEOMICS; HUMAN; METHODOLOGY; REVIEW;

BIOLOGICAL MARKERS; HUMANS; MASS SPECTROMETRY; OLIGONUCLEOTIDE ARRAY SEQUENCE ANALYSIS; PROTEOME;

EID: 0036130648     PISSN: 07366205     EISSN: None     Source Type: Journal    
DOI: 10.2144/mar0205     Document Type: Article

References (30)

1. The use of seldi proteinchip arrays to monitor production of Alzheimer's betaamyloid in transfected cells
2. Gene expression informatics - It's all in your mine
3. Tissue classification with gene expression profiles
4. Clustering gene expression patterns
5. BACE1 is the major beta-secretase for generation of Abeta peptides by neurons
6. Ratio-based decisions and the quantitative analysis of cDNA microarray images
7. Cluster analysis and display of genome-wide expression patterns
8. Protein biochips for differential profiling
9. Proteomic strategies for biomarker identification: Progress and challenges
10. Molecular classification of cancer: Class discovery and class prediction by gene expression monitoring
11. Quantitative proteomic analysis using a MALDI quadrupole time-of-flight mass spectrometer
12. Toward proteomics in uroscopy: Urinary protein profiles after radiocontrast medium administration
13. A concise guide to cDNA microarray analysis
14. Emerging technologies for large-scale screening of human tissues and fluids in the study of severe psychiatric disease
15. Improved statistical inference from DNA microarray data using analysis of variance and a Bayesian statistical framework. Analysis of global gene expression in Escherichia coli K12
16. Recent advancements in surface-enhanced laser desopttion/ionization time-of-flight mass spectrometry
17. Feature selection for DNA methylation based cancer classification
18. Analysis of molecular profile data using generative and discriminative methods
19. Statistical issues in tumor marker studies
20. Analyzing high-density oligonucleotide gene expression array data
21. Tissue-specific microdissection coupled with ProteinChip array technologies: Applications in cancer research
22. Mass spectrometry meets chip technology: A new proteomic tool in cancer research?
23. Identification of prostate specific membrane antigen (PSMA) as the target of monoclonal antibody 107-1A4 by proteinchip array, surface-enhanced laser desorption/ionization (SELDI) technology
24. Limited acid hydrolysis as a means of fragmenting proteins isolated upon ProteinChip® array surfaces
25. Recent trends in protein biochip technology
26. Quantitation of serum prostate-specific membrane antigen by a novel protein biochip immunoassay discriminates benign from malignant prostate disease
27. Recursive partitioning for tumor classification with gene expression microarray data
28. Centralization: A new method for the normalization of gene expression data