-
1
-
-
0036645099
-
Serum protein fingerprinting coupled with a pattern-matching algorithm distinguishes prostate cancer from benign prostate hyperplasia and healthy men
-
Adam,B.-L., Qu,Y., Davis J.W., Ward,M.D., Clements,M.A., Cazares,L.H., Semmes,O.J., Schellhammer,P.F., Yasui,Y., Feng,Z. et al. (2002) Serum protein fingerprinting coupled with a pattern-matching algorithm distinguishes prostate cancer from benign prostate hyperplasia and healthy men. Cancer Res., 62, 3609-3614.
-
(2002)
Cancer Res.
, vol.62
, pp. 3609-3614
-
-
Adam, B.-L.1
Qu, Y.2
Davis, J.W.3
Ward, M.D.4
Clements, M.A.5
Cazares, L.H.6
Semmes, O.J.7
Schellhammer, P.F.8
Yasui, Y.9
Feng, Z.10
-
2
-
-
0033536012
-
Broad patterns of gene expression revealed by clustering analysis of tumor and normal colon tissues probed by oligonucleotide arrays
-
Alon,U., Barkai,N., Notterman,D.A., Gish,K., Ybarra,S., Mack,D. and Levine,A.J. (1999) Broad patterns of gene expression revealed by clustering analysis of tumor and normal colon tissues probed by oligonucleotide arrays. Proc. Natl Acad Sci. USA, 96, 6745-6750.
-
(1999)
Proc. Natl Acad Sci. USA
, vol.96
, pp. 6745-6750
-
-
Alon, U.1
Barkai, N.2
Notterman, D.A.3
Gish, K.4
Ybarra, S.5
Mack, D.6
Levine, A.J.7
-
3
-
-
0034370950
-
On the adaptive control of the false discovery. Rate in multiple testing with independent statistics
-
Berjamini,Y. and Hochberg,Y. (2000) On the adaptive control of the false discovery. rate in multiple testing with independent statistics. J. Educational Behavioral Statistics, 25, 60-83.
-
(2000)
J. Educational Behavioral Statistics
, vol.25
, pp. 60-83
-
-
Berjamini, Y.1
Hochberg, Y.2
-
4
-
-
0035733108
-
The control of the false discovery rate in multiple testing under dependency
-
Benjamini,Y and Yekutieli,D. (2001) The control of the false discovery rate in multiple testing under dependency. Ann. Statist., 29, 1165-1188.
-
(2001)
Ann. Statist.
, vol.29
, pp. 1165-1188
-
-
Benjamini, Y.1
Yekutieli, D.2
-
5
-
-
0034601455
-
Molecular classification of cutaneous malignant melanoma by gene expression profiling
-
Bittner,M., Meltzer,P., Chen,Y., Jiang,Y, Seftor,E., Hendrix,M., Radmacher,M., Simon,R., Yakhini,Z., Ben-Dor,A. et al. (2000) Molecular classification of cutaneous malignant melanoma by gene expression profiling. Nature, 406, 536-540.
-
(2000)
Nature
, vol.406
, pp. 536-540
-
-
Bittner, M.1
Meltzer, P.2
Chen, Y.3
Jiang, Y.4
Seftor, E.5
Hendrix, M.6
Radmacher, M.7
Simon, R.8
Yakhini, Z.9
Ben-Dor, A.10
-
6
-
-
0036372855
-
New feature subset selection procedure for classification of expression profiles
-
Bø,T.H. and Jonassen,I. (2002) New feature subset selection procedure for classification of expression profiles. Genome Biol., 3, 1-11.
-
(2002)
Genome Biol.
, vol.3
, pp. 1-11
-
-
Bø, T.H.1
Jonassen, I.2
-
8
-
-
0034602774
-
Knowledge-based analysis of microarray gene expression data by using support vector machines
-
Brown,M.P.S., Grundy,W.N., Lin,D., Cristianini,N., Sugnet,C., Furey,T.S., Ares,Jr,M. and Haussler,D. (2000) Knowledge-based analysis of microarray gene expression data by using support vector machines. Proc. Natl Acad. Sci. USA, 97, 262-267.
-
(2000)
Proc. Natl Acad. Sci. USA
, vol.97
, pp. 262-267
-
-
Brown, M.P.S.1
Grundy, W.N.2
Lin, D.3
Cristianini, N.4
Sugnet, C.5
Furey, T.S.6
Ares M., Jr.7
Haussler, D.8
-
9
-
-
84942213019
-
The best two independent measurements are not the two best
-
Cover,T.M. (1974) The best two independent measurements are not the two best. IEEE Trans. Syst. Man. Cybern., 4, 116-117.
-
(1974)
IEEE Trans. Syst. Man. Cybern.
, vol.4
, pp. 116-117
-
-
Cover, T.M.1
-
10
-
-
0029852580
-
Use of a cDNA microarray to analyse gene expression patterns in human cancer
-
DeRisi,J., Penland,L., Brown,P.O., Bittner,M.L., Meltzer,P.S., Ray,M., Chen,Y., Su,Y.A. and Trent,J.M. (1996) Use of a cDNA microarray to analyse gene expression patterns in human cancer. Nature Genet., 14, 457-460.
-
(1996)
Nature Genet.
, vol.14
, pp. 457-460
-
-
DeRisi, J.1
Penland, L.2
Brown, P.O.3
Bittner, M.L.4
Meltzer, P.S.5
Ray, M.6
Chen, Y.7
Su, Y.A.8
Trent, J.M.9
-
11
-
-
0003922190
-
-
2nd edn, Wiley, New York
-
Duda,R.O., Hart,P.E. and Stork,D.G. (2000) Pattern Classification, 2nd edn, Wiley, New York.
-
(2000)
Pattern Classification
-
-
Duda, R.O.1
Hart, P.E.2
Stork, D.G.3
-
12
-
-
0032441150
-
Cluster analysis and display of genome-wide expression patterns
-
Eisen,M., Spellman,P.T., Brown,P.O. and Botstein,D. (1998) Cluster analysis and display of genome-wide expression patterns. Proc. Natl Acad. Sci. USA, 95, 14 863-14 868.
-
(1998)
Proc. Natl Acad. Sci. USA
, vol.95
, pp. 14863-14868
-
-
Eisen, M.1
Spellman, P.T.2
Brown, P.O.3
Botstein, D.4
-
13
-
-
0015395891
-
Considerations of sample and feature size
-
Foley,D.H. (1972) Considerations of sample and feature size. IEEE Trans. Inform. Theor, IT-18, 618-626.
-
(1972)
IEEE Trans. Inform. Theor
, vol.IT-18
, pp. 618-626
-
-
Foley, D.H.1
-
14
-
-
58149321460
-
Boosting a weak learning algorithm by majority
-
Freund,Y. (1995) Boosting a weak learning algorithm by majority. Information and Computation, 121, 256-285.
-
(1995)
Information and Computation
, vol.121
, pp. 256-285
-
-
Freund, Y.1
-
15
-
-
84887916087
-
Regularized discriminant analysis
-
Friedman,J. (1989) Regularized discriminant analysis. J. Am. Stat. Assoc., 84, 165-175.
-
(1989)
J. Am. Stat. Assoc.
, vol.84
, pp. 165-175
-
-
Friedman, J.1
-
16
-
-
0016102310
-
A projection pursuit algorithm for exploratory data analysis
-
Friedman,J. and Tukey,J.W. (1974) A projection pursuit algorithm for exploratory data analysis. IEEE Trans. Comput., C-23, 881-889.
-
(1974)
IEEE Trans. Comput.
, vol.C-23
, pp. 881-889
-
-
Friedman, J.1
Tukey, J.W.2
-
17
-
-
0033636139
-
Support vector machine classification and validation of cancer tissue samples using microarray expression data
-
Furey,T.S., Cristianini,N., Duffy,N., Bednarski,D.W., Schummer,M. and Haussler,D. (2000) Support vector machine classification and validation of cancer tissue samples using microarray expression data. Bioinformatics, 16, 906-914.
-
(2000)
Bioinformatics
, vol.16
, pp. 906-914
-
-
Furey, T.S.1
Cristianini, N.2
Duffy, N.3
Bednarski, D.W.4
Schummer, M.5
Haussler, D.6
-
18
-
-
0033569406
-
Molecular classification of cancer: Class discovery and class prediction by gene expression monitoring
-
Golub,T.R., Slonim,D.K., Tamayo,P., Huard,C., Gaasenbeek,M., Mesirov,J.P., Coller,H., Loh,M.L., Downing,J.R., Caligiuri,M.A. et al. (1999) Molecular classification of cancer: Class discovery and class prediction by gene expression monitoring. Science, 286, 531-537.
-
(1999)
Science
, vol.286
, pp. 531-537
-
-
Golub, T.R.1
Slonim, D.K.2
Tamayo, P.3
Huard, C.4
Gaasenbeek, M.5
Mesirov, J.P.6
Coller, H.7
Loh, M.L.8
Downing, J.R.9
Caligiuri, M.A.10
-
19
-
-
0036161259
-
Gene selection for cancer classification using support vector machines
-
Guyon,I., Weston,J., Barnhill,S. and Vapnik,V. (2002) Gene selection for cancer classification using support vector machines. Machine Learning, 46, 389-422.
-
(2002)
Machine Learning
, vol.46
, pp. 389-422
-
-
Guyon, I.1
Weston, J.2
Barnhill, S.3
Vapnik, V.4
-
20
-
-
0035931947
-
Gene-expression profiles in hereditary breast cancer
-
Hedenfalk,I., Duggan,D., Chen,Y, Radmacher,M., Bittner,M., Simon,R., Meltzer,P., Gusterson,B., Esteller,M., Kallioniemi,O.-P. et al. (2001) Gene-expression profiles in hereditary breast cancer. New Engl. J. Med., 344, 539-548.
-
(2001)
New Engl. J. Med.
, vol.344
, pp. 539-548
-
-
Hedenfalk, I.1
Duggan, D.2
Chen, Y.3
Radmacher, M.4
Bittner, M.5
Simon, R.6
Meltzer, P.7
Gusterson, B.8
Esteller, M.9
Kallioniemi, O.-P.10
-
23
-
-
0034954414
-
Classification and diagnostic prediction of cancers using gene expression profiling and artificial neural networks
-
Khan,J., Wei,J.S., Ringnér,M., Saal,H., Ladanyi,M., Westermann,F., Berthold,F., Schwab,M., Antonescu,C.R., Peterson,C. et al. (2001) Classification and diagnostic prediction of cancers using gene expression profiling and artificial neural networks. Nat. Med., 7, 1-10.
-
(2001)
Nat. Med.
, vol.7
, pp. 1-10
-
-
Khan, J.1
Wei, J.S.2
Ringnér, M.3
Saal, H.4
Ladanyi, M.5
Westermann, F.6
Berthold, F.7
Schwab, M.8
Antonescu, C.R.9
Peterson, C.10
-
24
-
-
0002774069
-
-
Chen,C.H. (ed.), Sijthoff Noordhoff, Netherlands
-
Kittler,J. (1978) Pattern Recognition and Signal Processing. Chen,C.H. (ed.), Sijthoff Noordhoff, Netherlands, pp. 41-60.
-
(1978)
Pattern Recognition and Signal Processing
, pp. 41-60
-
-
Kittler, J.1
-
26
-
-
0031381525
-
Wrappers for feature subset selection
-
Kohavi,R. and John,G.H. (1997) Wrappers for feature subset selection. Artificial Intelligence, 97, 273-324.
-
(1997)
Artificial Intelligence
, vol.97
, pp. 273-324
-
-
Kohavi, R.1
John, G.H.2
-
28
-
-
35848934618
-
Accurate diagnosis and prognosis of human cancers by proton MRS and a three stage classification strategy
-
Annual Reports on NMR Spectroscopy
-
Lean,C.L., Somorjai,R.L., Smith,I.C.P., Russell,P. and Mountford,C.E. (2002) Accurate diagnosis and prognosis of human cancers by proton MRS and a three stage classification strategy. Annual Reports on NMR Spectroscopy, 48, 71-111.
-
(2002)
, vol.48
, pp. 71-111
-
-
Lean, C.L.1
Somorjai, R.L.2
Smith, I.C.P.3
Russell, P.4
Mountford, C.E.5
-
29
-
-
0036139278
-
Gene selection for sample classification based on gene expression data: Study of sensitivity to choice of parameters of the GA/KNN method
-
Li,L., Weinberg,C.R., Darden,Th.A. and Pedersen,L.G. (2001) Gene selection for sample classification based on gene expression data: study of sensitivity to choice of parameters of the GA/KNN method. Bioinformatics, 17, 1131-1142.
-
(2001)
Bioinformatics
, vol.17
, pp. 1131-1142
-
-
Li, L.1
Weinberg, C.R.2
Darden, Th.A.3
Pedersen, L.G.4
-
30
-
-
0036324715
-
Proteomics and bioinformatics approaches of serum biomarkers to detect breast cancer
-
Li,J., Zhang,Zh., Rosenzweig,J., Wang,Y.Y. and Chan,D.W. (2002) Proteomics and bioinformatics approaches of serum biomarkers to detect breast cancer. Clinical Chemistry, 48, 1296-1304.
-
(2002)
Clinical Chemistry
, vol.48
, pp. 1296-1304
-
-
Li, J.1
Zhang, Zh.2
Rosenzweig, J.3
Wang, Y.Y.4
Chan, D.W.5
-
31
-
-
0035272287
-
An introduction to kernel-based learning algorithms
-
Müller,K.-R., Mika,S., Rätsch,G., Tsuda,K. and Schölkopf,B. (2001) An introduction to kernel-based learning algorithms. IEEE Transaction on Neural Networks, 12, 181-201.
-
(2001)
IEEE Transaction on Neural Networks
, vol.12
, pp. 181-201
-
-
Müller, K.-R.1
Mika, S.2
Rätsch, G.3
Tsuda, K.4
Schölkopf, B.5
-
32
-
-
0031926888
-
Near-optimal region selection for feature space reduction: Novel preprocessing methods for classifying MR spectra
-
Nikulin,A.E., Dolenko,B., Bezabeh,T. and Somorjai,R.L. (1998) Near-optimal region selection for feature space reduction: novel preprocessing methods for classifying MR spectra. NMR Biomed., 11, 209-216.
-
(1998)
NMR Biomed.
, vol.11
, pp. 209-216
-
-
Nikulin, A.E.1
Dolenko, B.2
Bezabeh, T.3
Somorjai, R.L.4
-
33
-
-
0037116832
-
Use of proteomic patterns in serum to identify ovarian cancer
-
Petricoin,III,E.F., Ardekani,A.M., Hitt,B.A., Levine,P.J., Fusaro,V.A., Steinberg,S.M., Mills,G.B., Simone,Ch., Fishman,D.A., Kohn,E.C. et al. (2002) Use of proteomic patterns in serum to identify ovarian cancer. Lancet, 359, 572-577.
-
(2002)
Lancet
, vol.359
, pp. 572-577
-
-
Petricoin E.F. III1
Ardekani, A.M.2
Hitt, B.A.3
Levine, P.J.4
Fusaro, V.A.5
Steinberg, S.M.6
Mills, G.B.7
Simone, Ch.8
Fishman, D.A.9
Kohn, E.C.10
-
34
-
-
0037165140
-
Prediction of central nervous system embryonal tumour outcome based on gene expression
-
Pomeroy,S.L., Tamayo,P., Gaasenbeek,M., Sturla,L.M., Angelo,M., McLaughlin,M.E., Kim,J.Y.H., Goumnerova,L.C., Black,P.M., Lau,Ch. et al. (2002) Prediction of central nervous system embryonal tumour outcome based on gene expression. Nature, 415, 436-442.
-
(2002)
Nature
, vol.415
, pp. 436-442
-
-
Pomeroy, S.L.1
Tamayo, P.2
Gaasenbeek, M.3
Sturla, L.M.4
Angelo, M.5
McLaughlin, M.E.6
Kim, J.Y.H.7
Goumnerova, L.C.8
Black, P.M.9
Lau, Ch.10
-
35
-
-
0032523506
-
Properties of support vector machines
-
Pontil,M. and Verri,A. (2001) Properties of support vector machines. Neural Computation, 10, 955-974.
-
(2001)
Neural Computation
, vol.10
, pp. 955-974
-
-
Pontil, M.1
Verri, A.2
-
36
-
-
0347201147
-
Multiclass cancer diagnosis using tumor gene expression signatures
-
Ramaswamy,S., Tamayo,P., Rifkin,R., Mukherjee,S., Yeang,Ch.-H., Angelo,M., Ladd,Ch., Reich,M., Latulippe,E., Mesirov,J.P. et al. (2001) Multiclass cancer diagnosis using tumor gene expression signatures. Proc. Natl Acad. Sci. USA, 98, 15 149-15 154,
-
(2001)
Proc. Natl Acad. Sci. USA
, vol.98
, pp. 15149-15154
-
-
Ramaswamy, S.1
Tamayo, P.2
Rifkin, R.3
Mukherjee, S.4
Yeang, Ch.-H.5
Angelo, M.6
Ladd, Ch.7
Reich, M.8
Latulippe, E.9
Mesirov, J.P.10
-
37
-
-
0032029282
-
Evolution and generalization of a single neurone. I. Single-layer perceptron as seven statistical classifiers
-
Raudys,J. (1998) Evolution and generalization of a single neurone. I. single-layer perceptron as seven statistical classifiers. Neural Networks, 11, 283-296.
-
(1998)
Neural Networks
, vol.11
, pp. 283-296
-
-
Raudys, J.1
-
41
-
-
0024196297
-
An overview of mapping techniques for exploratory pattern analysis
-
Siedlecki,W., Siedlecka,K. and Sklansky,J. (1988) An overview of mapping techniques for exploratory pattern analysis. Pattern Recognition, 21, 411-429.
-
(1988)
Pattern Recognition
, vol.21
, pp. 411-429
-
-
Siedlecki, W.1
Siedlecka, K.2
Sklansky, J.3
-
42
-
-
0033220764
-
Adaptive floating search methods in feature selection
-
Somol,P., Pudil,P., Novovicová,J. and Paclík,P. (1999) Adaptive floating search methods in feature selection. Pattern Recognition Letters, 20, 1157-1163.
-
(1999)
Pattern Recognition Letters
, vol.20
, pp. 1157-1163
-
-
Somol, P.1
Pudil, P.2
Novovicová, J.3
Paclík, P.4
-
44
-
-
0037185960
-
A 3-stage robust classification strategy for biomedical spectra: Application to urine MR and IR spectra to distinguish normal allografts from biopsy proven rejections
-
Somorjai,R.L., Dolenko,B., Nikulin,A., Nickerson,R, Rush,D., Shaw,A., de Glogowski,M., Rendell,J. and Deslauriers,R. (2002) A 3-stage robust classification strategy for biomedical spectra: application to urine MR and IR spectra to distinguish normal allografts from biopsy proven rejections. Vibrational Spectroscopy, 28, 97-102.
-
(2002)
Vibrational Spectroscopy
, vol.28
, pp. 97-102
-
-
Somorjai, R.L.1
Dolenko, B.2
Nikulin, A.3
Nickerson, R.4
Rush, D.5
Shaw, A.6
de Glogowski, M.7
Rendell, J.8
Deslauriers, R.9
-
45
-
-
0035887459
-
Molecular classification of human carcinomas by use of gene expression signatures
-
Su,A.I., Welsh,J.B., Sapinoso,L.M., Kern,S.G., Dimitrov,P., Lapp,H., Schultz,P.G., Powell,S.M., Moskaluk,C.A., Frierson,Jr,H.F. et al. (2001) Molecular classification of human carcinomas by use of gene expression signatures. Cancer Res., 61, 7388-7393.
-
(2001)
Cancer Res.
, vol.61
, pp. 7388-7393
-
-
Su, A.I.1
Welsh, J.B.2
Sapinoso, L.M.3
Kern, S.G.4
Dimitrov, P.5
Lapp, H.6
Schultz, P.G.7
Powell, S.M.8
Moskaluk, C.A.9
Frierson H.F., Jr.10
-
46
-
-
0037076272
-
Diagnosis of multiple cancer types by shrunken centroids of gene expression
-
Tibshirani,R., Hastie,T., Narasimhan,B. and Chu,G. (2002) Diagnosis of multiple cancer types by shrunken centroids of gene expression. Proc. Natl Acad. Sci. USA, 99, 6567-6572.
-
(2002)
Proc. Natl Acad. Sci. USA
, vol.99
, pp. 6567-6572
-
-
Tibshirani, R.1
Hastie, T.2
Narasimhan, B.3
Chu, G.4
-
47
-
-
0035074699
-
Development of a novel proteomic approach for the detection of transitional cell carcinoma of the bladder in urine
-
Vlahou,A., Schellhammer,P.F., Mendrinos,S., Patel,K., Kondylis,F.I., Gong,L., Nasim,S. and Wright,Jr,G.L. (2001) Development of a novel proteomic approach for the detection of transitional cell carcinoma of the bladder in urine. Am. J. Pathol., 158, 1491-1502.
-
(2001)
Am. J. Pathol.
, vol.158
, pp. 1491-1502
-
-
Vlahou, A.1
Schellhammer, P.F.2
Mendrinos, S.3
Patel, K.4
Kondylis, F.I.5
Gong, L.6
Nasim, S.7
Wright G.L., Jr.8
-
48
-
-
0031521660
-
Multiple tests with discrete distributions
-
Westfall,P.H. and Wolfinger,R.D. (1997) Multiple tests with discrete distributions. Am. Statist., 51, 3-8.
-
(1997)
Am. Statist.
, vol.51
, pp. 3-8
-
-
Westfall, P.H.1
Wolfinger, R.D.2
-
49
-
-
0011063449
-
Proteinchip surface enhanced laser desorption/ionization (SELDI) mass spectrometry: A novel protein biochip technology for detection of prostate cancer biomarkers in complex protein mixture
-
Wright.Jr.G.L., Cazares,L.H., Leung,S.-M., Nasim,S., Adam,B.-L., Yip,T.-T., Schellhammer,P.F., Gong,L. and Vlahou,A. (1999) Proteinchip surface enhanced laser desorption/ionization (SELDI) mass spectrometry: a novel protein biochip technology for detection of prostate cancer biomarkers in complex protein mixture. Prostate Cancer and Prostatic Diseases, 2, 264-276.
-
(1999)
Prostate Cancer and Prostatic Diseases
, vol.2
, pp. 264-276
-
-
Wright. G.L., Jr.1
Cazares, L.H.2
Leung, S.-M.3
Nasim, S.4
Adam, B.-L.5
Yip, T.-T.6
Schellhammer, P.F.7
Gong, L.8
Vlahou, A.9
-
50
-
-
0000060617
-
Molecular classification of multiple tumor types
-
Yeang,Ch.-H., Ramaswamy,S., Tamayo,P., Mukherjee,S., Rifkin,R.M., Angelo,M., Reich,M., Lander,E., Mesirov,J. and Golub,T. (2001) Molecular classification of multiple tumor types. Bioinformatics, 17, S316-S322.
-
(2001)
Bioinformatics
, vol.17
-
-
Yeang, Ch.-H.1
Ramaswamy, S.2
Tamayo, P.3
Mukherjee, S.4
Rifkin, R.M.5
Angelo, M.6
Reich, M.7
Lander, E.8
Mesirov, J.9
Golub, T.10
-
51
-
-
0037744841
-
-
AI Memo 2001-018; CBL Memo 206, MIT-artificial intelligence laboratory, Cambridge, MA
-
Yeo,G. and Poggio,T. (2001) Multiclass classification of SRBCTs, AI Memo 2001-018; CBL Memo 206, MIT-artificial intelligence laboratory, Cambridge, MA, pp. 1-17.
-
(2001)
Multiclass Classification of SRBCTs
, pp. 1-17
-
-
Yeo, G.1
Poggio, T.2
|