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Volumn 53, Issue 3, 2004, Pages 384-399

Testing the phylogenetic position of a parasitic plant (Cuscuta, convolvulaceae, asteridae): Bayesian inference and the parametric bootstrap on data drawn from three genomes

Author keywords

Bayesian analysis; Convolvulaceae; cpDNA; Cuscuta; Maximum likelihood; Maximum parsimony; Mitochondrial DNA; Molecular systematics; Parametric bootstrap; RPB2

Indexed keywords

CHLOROPLAST DNA; MITOCHONDRIAL DNA; NUCLEAR PROTEIN; PRIMER DNA;

EID: 3242700373     PISSN: 10635157     EISSN: None     Source Type: Journal    
DOI: 10.1080/10635150490445896     Document Type: Article
Times cited : (73)

References (102)
  • 1
    • 0000501656 scopus 로고
    • Information theory as an extension of the maximum likelihood principle
    • (B. N. Petrov and F. Csaki, eds.). Akademiai Kiado, Budapest
    • Akaike, H. 1973. Information theory as an extension of the maximum likelihood principle. Pages 267-281 in Second International Symposium on Information Theory (B. N. Petrov and F. Csaki, eds.). Akademiai Kiado, Budapest.
    • (1973) Second International Symposium on Information Theory , pp. 267-281
    • Akaike, H.1
  • 2
    • 0032442799 scopus 로고    scopus 로고
    • An ordinal classification for the families of flowering plants
    • Angiosperm Phylogeny Group (APG). 1998. An ordinal classification for the families of flowering plants. Ann. Mo. Bot. Gard. 85:531-553.
    • (1998) Ann. Mo. Bot. Gard. , vol.85 , pp. 531-553
  • 3
    • 0000275436 scopus 로고
    • The American Erycibeae (Convolvulaceae): Maripa, Dicranostyles, and Lysiostyles I. Systematics
    • Austin, D. F. 1973. The American Erycibeae (Convolvulaceae): Maripa, Dicranostyles, and Lysiostyles I. Systematics. Ann. Mo. Bot. Gard. 60:306-412.
    • (1973) Ann. Mo. Bot. Gard. , vol.60 , pp. 306-412
    • Austin, D.F.1
  • 4
    • 0010540252 scopus 로고    scopus 로고
    • Parallel and convergent evolution in the Convolvulaceae
    • (P. Mathews and M. Sivadasan, eds.). Mentor Books, Culicut, India
    • Austin, D. F. 1998. Parallel and convergent evolution in the Convolvulaceae. Pages 201-234 in Biodiversity and taxonomy of tropical flowering plants (P. Mathews and M. Sivadasan, eds.). Mentor Books, Culicut, India.
    • (1998) Biodiversity and Taxonomy of Tropical Flowering Plants , pp. 201-234
    • Austin, D.F.1
  • 5
    • 0010577260 scopus 로고
    • Convolvulacées
    • Librairie Hachett and Cie., Paris, France
    • Baillon, H. 1891. Convolvulacées. Pages 305-331 in Histoire des plantes, Librairie Hachett and Cie., Paris, France.
    • (1891) Histoire des Plantes , pp. 305-331
    • Baillon, H.1
  • 6
    • 1642433224 scopus 로고    scopus 로고
    • Mitochondrial DNA sequences reveal the photosynthetic relatives of Rafflesia, the world's largest flower
    • Barkman, T. J, S.-H. Lim, K. M. Salleh, and J. Nais. 2004. Mitochondrial DNA sequences reveal the photosynthetic relatives of Rafflesia, the world's largest flower. Proc. Natl. Acad. Sci. U.S.A. 101:787-792.
    • (2004) Proc. Natl. Acad. Sci. U.S.A. , vol.101 , pp. 787-792
    • Barkman, T.J.1    Lim, S.-H.2    Salleh, K.M.3    Nais, J.4
  • 8
    • 3242718303 scopus 로고
    • A mycoherbicide for control of swamp dodder (Cuscuta gronovii Willd.), Cuscutaceae
    • (H. C. Weber and W. Forstreuter, eds.). Philipps-Universität, Marburg, Germany
    • Bewick, T. A., L. K. Binning, W. R. Stevenson, and J. Stewart. 1987. A mycoherbicide for control of swamp dodder (Cuscuta gronovii Willd.), Cuscutaceae. Pages 93-104 in Parasitic flowering plants (H. C. Weber and W. Forstreuter, eds.). Philipps-Universität, Marburg, Germany.
    • (1987) Parasitic Flowering Plants , pp. 93-104
    • Bewick, T.A.1    Binning, L.K.2    Stevenson, W.R.3    Stewart, J.4
  • 9
    • 0027327386 scopus 로고
    • A large deletion in the plastid DNA of the holoparasitic flowering plant Cuscuta reflexa concerning two ribosomal proteins (rpl2, rpl23), one transfer RNA (trnI) and an ORF 2280 homologue
    • Bömmer, D., G. Haberhausen, and K. Zetsche. 1993. A large deletion in the plastid DNA of the holoparasitic flowering plant Cuscuta reflexa concerning two ribosomal proteins (rpl2, rpl23), one transfer RNA (trnI) and an ORF 2280 homologue. Curr. Genet. 24:171-176.
    • (1993) Curr. Genet. , vol.24 , pp. 171-176
    • Bömmer, D.1    Haberhausen, G.2    Zetsche, K.3
  • 10
    • 0036623259 scopus 로고    scopus 로고
    • Model misspecification and probablistic tests of topology: Evidence from empirical data sets
    • Buckley, T. R. 2002. Model misspecification and probablistic tests of topology: Evidence from empirical data sets. Syst. Biol. 51:509-523.
    • (2002) Syst. Biol. , vol.51 , pp. 509-523
    • Buckley, T.R.1
  • 11
    • 0033864359 scopus 로고    scopus 로고
    • Actin gene family evolution and the phylogeny of coleoid caphalopods (Mollusca: Cephalopoda)
    • Carlini, B. B., K. S. Reece, and J. E. Graves. 2000. Actin gene family evolution and the phylogeny of coleoid caphalopods (Mollusca: Cephalopoda). Mol. Biol. Evol. 17:1353-1370.
    • (2000) Mol. Biol. Evol. , vol.17 , pp. 1353-1370
    • Carlini, B.B.1    Reece, K.S.2    Graves, J.E.3
  • 13
    • 0000248336 scopus 로고
    • Convolvulaceae
    • A. DeCandole
    • Choisy, J. D. 1845. Convolvulaceae. In A. DeCandole, Prodromus 9:323-465.
    • (1845) Prodromus , vol.9 , pp. 323-465
    • Choisy, J.D.1
  • 16
    • 0032099263 scopus 로고    scopus 로고
    • Data decisiveness, data quality, and incongruence in phylogenetic analysis: An example from the monocotyledons using mitochondrial atpA sequences
    • Davis, J. I., M. P. Simmons, D. W. Stevenson, and J. F. Wendel. 1998. Data decisiveness, data quality, and incongruence in phylogenetic analysis: An example from the monocotyledons using mitochondrial atpA sequences. Syst. Biol. 47:282-310.
    • (1998) Syst. Biol. , vol.47 , pp. 282-310
    • Davis, J.I.1    Simmons, M.P.2    Stevenson, D.W.3    Wendel, J.F.4
  • 17
    • 3242725582 scopus 로고
    • Cuscuta (Convolvulaceae) and its control
    • (H. C. Weber and W. Forstreuter, eds.). Philipps-Universität, Marburg, Germany
    • Dawson, J. H. 1987. Cuscuta (Convolvulaceae) and its control. Pages 137-149 in Parasitic flowering plants (H. C. Weber and W. Forstreuter, eds.). Philipps-Universität, Marburg, Germany.
    • (1987) Parasitic Flowering Plants , pp. 137-149
    • Dawson, J.H.1
  • 18
    • 3242657777 scopus 로고
    • Dodder (Cuscuta spp.) control with dinitroaniline herbicides in alfalfa (Medicago sativa)
    • Dawson, J. H. 1990. Dodder (Cuscuta spp.) control with dinitroaniline herbicides in alfalfa (Medicago sativa). Weed Techn. 4:341-348.
    • (1990) Weed Techn. , vol.4 , pp. 341-348
    • Dawson, J.H.1
  • 20
    • 0031950476 scopus 로고    scopus 로고
    • Usefulness of RNA polymerase II coding sequence for estimation of green plant phylogeny
    • Denton, A. L., B. L. McConaughy, and B. D. Hall. 1998. Usefulness of RNA polymerase II coding sequence for estimation of green plant phylogeny. Mol. Biol. Evol. 15:1082-1085.
    • (1998) Mol. Biol. Evol. , vol.15 , pp. 1082-1085
    • Denton, A.L.1    McConaughy, B.L.2    Hall, B.D.3
  • 21
    • 0030738482 scopus 로고    scopus 로고
    • Evolution of plastid gene rps2 in a lineage of hemiparasitic and holoparasitic plants: Many losses of photosynthesis and complex patterns of rate variation
    • dePamphilis, C. W, N. D. Young, and A. D. Wolfe. 1997. Evolution of plastid gene rps2 in a lineage of hemiparasitic and holoparasitic plants: Many losses of photosynthesis and complex patterns of rate variation. Proc. Natl. Acad. Sci. U.S.A. 94:7367-7372.
    • (1997) Proc. Natl. Acad. Sci. U.S.A. , vol.94 , pp. 7367-7372
    • DePamphilis, C.W.1    Young, N.D.2    Wolfe, A.D.3
  • 22
    • 0344631920 scopus 로고
    • The haustorium of Cuscuta - New staructural results
    • (H. C. Weber and W. Forstreuter, eds.). Philipps-Universität, Marburg, Germany
    • Dörr, I. 1987. The haustorium of Cuscuta - new staructural results. Pages 163-170 in Parasitic flowering plants (H. C. Weber and W. Forstreuter, eds.). Philipps-Universität, Marburg, Germany.
    • (1987) Parasitic Flowering Plants , pp. 163-170
    • Dörr, I.1
  • 23
    • 0002594984 scopus 로고
    • A rapid DNA isolation procedure for small quantities of fresh leaf tissue
    • Doyle, J. J., and J. L. Doyle. 1987. A rapid DNA isolation procedure for small quantities of fresh leaf tissue. Phytochem. Bull. 19:11-15.
    • (1987) Phytochem. Bull. , vol.19 , pp. 11-15
    • Doyle, J.J.1    Doyle, J.L.2
  • 24
    • 0031453138 scopus 로고    scopus 로고
    • Characterization of mitochondrial small-subunit ribosomal RNAs from holoparasitic plants
    • Duff, R. J., and D. L. Nickrent. 1997. Characterization of mitochondrial small-subunit ribosomal RNAs from holoparasitic plants. J. Mol. Evol. 45:631-639.
    • (1997) J. Mol. Evol. , vol.45 , pp. 631-639
    • Duff, R.J.1    Nickrent, D.L.2
  • 26
    • 0000935168 scopus 로고
    • Systematic arrangement of the species of the genus Cuscuta with critical remarks on old species and descriptions of new ones
    • Engelmann, G. 1895. Systematic arrangement of the species of the genus Cuscuta with critical remarks on old species and descriptions of new ones. Trans. Acad. Sci., St. Louis 1:453-523.
    • (1895) Trans. Acad. Sci., St. Louis , vol.1 , pp. 453-523
    • Engelmann, G.1
  • 27
    • 84959798530 scopus 로고
    • Case in which parsimony or compatibility methods will be positively misleading
    • Felsenstein, J. 1978. Case in which parsimony or compatibility methods will be positively misleading. Syst. Zool. 27:401-410.
    • (1978) Syst. Zool. , vol.27 , pp. 401-410
    • Felsenstein, J.1
  • 28
    • 0019797407 scopus 로고
    • Evolutionary trees from DNA sequences: A maximum likelihood approach
    • Felsenstein, J. 1981. Evolutionary trees from DNA sequences: A maximum likelihood approach. J. Mol. Evol. 17:368-376.
    • (1981) J. Mol. Evol. , vol.17 , pp. 368-376
    • Felsenstein, J.1
  • 29
    • 0000461280 scopus 로고
    • Confidence limits on phylogenies: An approach using the bootstrap
    • Felsenstein, J. 1985. Confidence limits on phylogenies: An approach using the bootstrap. Evolution 39:783-791.
    • (1985) Evolution , vol.39 , pp. 783-791
    • Felsenstein, J.1
  • 30
    • 0024152983 scopus 로고
    • Phylogenies from molecular sequences: Inference and reliability
    • Felsenstein, J. 1988. Phylogenies from molecular sequences: Inference and reliability. Annu. Rev. Genet. 22:521-565.
    • (1988) Annu. Rev. Genet. , vol.22 , pp. 521-565
    • Felsenstein, J.1
  • 31
    • 0035527390 scopus 로고    scopus 로고
    • Phylogeny of Saxifragales (angiosperms, eudicots): Analysis of a rapid, ancient radiation
    • Fishbein, M., C. Hibsch-Jetter, D. E. Soltis, and L. Hufford. 2001. Phylogeny of Saxifragales (angiosperms, eudicots): Analysis of a rapid, ancient radiation. Syst. Biol. 50:817-847.
    • (2001) Syst. Biol. , vol.50 , pp. 817-847
    • Fishbein, M.1    Hibsch-Jetter, C.2    Soltis, D.E.3    Hufford, L.4
  • 32
    • 0029000441 scopus 로고
    • Structural and functional analysis of plastid genomes from parasitic plants: Loss of an intron within the genus Cuscuta
    • Freyer, R., K. Neckermann, R. M. Maier, and H. Kössel. 1995. Structural and functional analysis of plastid genomes from parasitic plants: Loss of an intron within the genus Cuscuta. Curr. Genet. 27:580-586.
    • (1995) Curr. Genet. , vol.27 , pp. 580-586
    • Freyer, R.1    Neckermann, K.2    Maier, R.M.3    Kössel, H.4
  • 33
    • 0034351387 scopus 로고    scopus 로고
    • Likelihood-based tests of topologies in phylogenetics
    • Goldman, N., J. P. Anderson, and A. G. Rodrigo. 2000. Likelihood-based tests of topologies in phylogenetics. Syst. Biol. 49:652-670.
    • (2000) Syst. Biol. , vol.49 , pp. 652-670
    • Goldman, N.1    Anderson, J.P.2    Rodrigo, A.G.3
  • 34
    • 0033666273 scopus 로고    scopus 로고
    • Utility of 17 chloroplast genes for inferring the phylogeny of the basal angiosperms
    • Graham, S. W., and R. G. Olmstead. 2000. Utility of 17 chloroplast genes for inferring the phylogeny of the basal angiosperms. Am. J. Bot. 87:1712-1730.
    • (2000) Am. J. Bot. , vol.87 , pp. 1712-1730
    • Graham, S.W.1    Olmstead, R.G.2
  • 35
    • 0026516123 scopus 로고
    • Organization and sequence of photosynthetic genes from the plastid genome of the holoparasitic flowering plant Cuscuta reflexa
    • Haberhausen, G., K. Valentin, and K. Zetsche. 1992. Organization and sequence of photosynthetic genes from the plastid genome of the holoparasitic flowering plant Cuscuta reflexa. Mol. Gen. Genet. 232:154-161.
    • (1992) Mol. Gen. Genet. , vol.232 , pp. 154-161
    • Haberhausen, G.1    Valentin, K.2    Zetsche, K.3
  • 36
    • 0028011752 scopus 로고
    • Functional loss of all ndh genes in an otherwise relatively unaltered plastid genome of the holoparasitic flowering plant Cuscuta reflexa
    • Haberhausen, G., and K. Zetsche. 1994. Functional loss of all ndh genes in an otherwise relatively unaltered plastid genome of the holoparasitic flowering plant Cuscuta reflexa. Plant Mol. Biol. 24:217-222.
    • (1994) Plant Mol. Biol. , vol.24 , pp. 217-222
    • Haberhausen, G.1    Zetsche, K.2
  • 37
    • 0001731011 scopus 로고
    • Versuch einer natürlichen Gleiderung der Convolvulaceen auf morphologischer und anatomischer Grundlage
    • Hallier, H. 1893. Versuch einer natürlichen Gleiderung der Convolvulaceen auf morphologischer und anatomischer Grundlage. Bot. Jahrb. Syst. 16:453-591.
    • (1893) Bot. Jahrb. Syst. , vol.16 , pp. 453-591
    • Hallier, H.1
  • 38
    • 0002050298 scopus 로고
    • Changes in cuticle structure during development and attachment of the upper haustorium of Cuscuta L., Cassytha L., and Viscum L.
    • (H. C. Weber and W. Forstreuter, eds.). Philipps-Universität, Marburg, Germany
    • Heide-Jørgensesn, H. S. 1987. Changes in cuticle structure during development and attachment of the upper haustorium of Cuscuta L., Cassytha L., and Viscum L. Pages 319-334 in Parasitic flowering plants (H. C. Weber and W. Forstreuter, eds.). Philipps-Universität, Marburg, Germany.
    • (1987) Parasitic Flowering Plants , pp. 319-334
    • Heide-Jørgensesn, H.S.1
  • 39
    • 0000084234 scopus 로고
    • A framework for the quantitative study of evolutionary trees
    • Hendy M. D., and D. Penny. 1989. A framework for the quantitative study of evolutionary trees. Syst. Zool. 38:297-309.
    • (1989) Syst. Zool. , vol.38 , pp. 297-309
    • Hendy, M.D.1    Penny, D.2
  • 40
    • 0029834661 scopus 로고    scopus 로고
    • Inferring complex phylogenies
    • Hillis, D. M. 1996. Inferring complex phylogenies. Nature 383:130-131.
    • (1996) Nature , vol.383 , pp. 130-131
    • Hillis, D.M.1
  • 41
    • 12044253190 scopus 로고
    • An empirical test of bootstrapping as a method for assessing confidence in phylogenetic analysis
    • Hillis, D. M., and J. J. Bull. 1993. An empirical test of bootstrapping as a method for assessing confidence in phylogenetic analysis. Syst. Biol. 42:182-192.
    • (1993) Syst. Biol. , vol.42 , pp. 182-192
    • Hillis, D.M.1    Bull, J.J.2
  • 42
    • 0000259305 scopus 로고
    • The utility of atpB gene sequences in phylogenetic relationships: Comparison with rbcL and 18S ribosomal DNA sequences in Lardizabalaceae
    • Hoot, S. B., A. Culham, and P. R. Crane. 1995. The utility of atpB gene sequences in phylogenetic relationships: Comparison with rbcL and 18S ribosomal DNA sequences in Lardizabalaceae. Ann. Mo. Bot. Gard. 82:194-207.
    • (1995) Ann. Mo. Bot. Gard. , vol.82 , pp. 194-207
    • Hoot, S.B.1    Culham, A.2    Crane, P.R.3
  • 43
    • 11944268967 scopus 로고
    • Performance of phylogenetic methods in simulations
    • Huelsenbeck, J. P. 1995. Performance of phylogenetic methods in simulations. Syst. Biol. 44:17-48.
    • (1995) Syst. Biol. , vol.44 , pp. 17-48
    • Huelsenbeck, J.P.1
  • 44
    • 0035527347 scopus 로고    scopus 로고
    • Empirical and hierarchical Bayesian estimation of ancestral states
    • Huelsenbeck, J. P., and J. P. Bollback. 2001. Empirical and hierarchical Bayesian estimation of ancestral states. Sysyt. Biol. 50:351-366.
    • (2001) Sysyt. Biol. , vol.50 , pp. 351-366
    • Huelsenbeck, J.P.1    Bollback, J.P.2
  • 45
    • 0031436890 scopus 로고    scopus 로고
    • Phylogeny estimation and hypothesis testing using maximum likelihood
    • Huelsenbeck, J. P., and K. A. Crandall. 1997. Phylogeny estimation and hypothesis testing using maximum likelihood. Annu. Rev. Ecol. Syst. 28:437-466.
    • (1997) Annu. Rev. Ecol. Syst. , vol.28 , pp. 437-466
    • Huelsenbeck, J.P.1    Crandall, K.A.2
  • 46
    • 12044255023 scopus 로고
    • Success of phylogenetic methods in the four-taxon case
    • Huelsenbeck, J. P., and D. M. Hillis. 1993. Success of phylogenetic methods in the four-taxon case. Syst. Biol. 42:247-264.
    • (1993) Syst. Biol. , vol.42 , pp. 247-264
    • Huelsenbeck, J.P.1    Hillis, D.M.2
  • 47
    • 0002410257 scopus 로고    scopus 로고
    • Parametric bootstrapping in molecular phylogenies: Application and performance
    • (J. D. Ferris and S. R. Palumbi, eds.). Wiley, New York, NY, USA
    • Huelsenbeck, J. P., D. M. Hillis, and R. Jones. 1996. Parametric bootstrapping in molecular phylogenies: Application and performance. Pages 19-45 in Molecular zoology: Advances, strategies, and protocols (J. D. Ferris and S. R. Palumbi, eds.). Wiley, New York, NY, USA.
    • (1996) Molecular Zoology: Advances, Strategies, and Protocols , pp. 19-45
    • Huelsenbeck, J.P.1    Hillis, D.M.2    Jones, R.3
  • 48
    • 0034849408 scopus 로고    scopus 로고
    • MrBayes: Bayesian inference of phylogeny
    • Huelsenbeck, J. P., and F. Ronquist. 2001. MrBayes: Bayesian inference of phylogeny. Biometrics 17:754-755.
    • (2001) Biometrics , vol.17 , pp. 754-755
    • Huelsenbeck, J.P.1    Ronquist, F.2
  • 49
  • 50
    • 0033823253 scopus 로고    scopus 로고
    • Tests of Pleistocene speciation in montane grasshoppers (genus Melanoplus) from the Sky Islands of western North America
    • Knowles, L. L. 2000. Tests of Pleistocene speciation in montane grasshoppers (genus Melanoplus) from the Sky Islands of western North America. Evolution 54:1337-1348.
    • (2000) Evolution , vol.54 , pp. 1337-1348
    • Knowles, L.L.1
  • 52
    • 0032976397 scopus 로고    scopus 로고
    • Markov chain Monte Carlo algorithms for the Bayesian analysis of phylogenetic trees
    • Larget, B. and D. L. Simon. 1999. Markov chain Monte Carlo algorithms for the Bayesian analysis of phylogenetic trees. Mol. Biol. Evol. 16:750-759.
    • (1999) Mol. Biol. Evol. , vol.16 , pp. 750-759
    • Larget, B.1    Simon, D.L.2
  • 53
    • 0001542507 scopus 로고
    • The structure and development of the haustorium in Cuscuta australis
    • Lee, K. B., and C. D. Lee. 1989. The structure and development of the haustorium in Cuscuta australis. Canadian J. Bot. 67:2975-2982.
    • (1989) Canadian J. Bot. , vol.67 , pp. 2975-2982
    • Lee, K.B.1    Lee, C.D.2
  • 54
    • 3242732685 scopus 로고
    • Parasitism and integrated control of dodder of soybean
    • (H. C. Weber and W. Forstreuter, eds.). Philipps-Universität, Marburg, Germany
    • Li, Y. 1987. Parasitism and integrated control of dodder of soybean. Pages 497-500 in Parasitic flowering plants (H. C. Weber and W. Forstreuter, eds.). Philipps-Universität, Marburg, Germany.
    • (1987) Parasitic Flowering Plants , pp. 497-500
    • Li, Y.1
  • 55
    • 0003586408 scopus 로고
    • Cambridge university press, Cambridge, UK
    • Mabberley, D. J. 1987. The plant book. Cambridge university press, Cambridge, UK.
    • (1987) The Plant Book
    • Mabberley, D.J.1
  • 56
    • 0001887567 scopus 로고
    • A structural, functional, and molecular analysis of plastids of the holoparasites Cuscuta reflexa and Cuscuta europaea
    • Machado, M. A., and K. Zetsche. 1990. A structural, functional, and molecular analysis of plastids of the holoparasites Cuscuta reflexa and Cuscuta europaea. Planta 181:91-96.
    • (1990) Planta , vol.181 , pp. 91-96
    • Machado, M.A.1    Zetsche, K.2
  • 57
    • 84960569058 scopus 로고
    • The discovery and importance of multiple islands of most-parsimonious trees
    • Maddison, D. R. 1991. The discovery and importance of multiple islands of most-parsimonious trees. Syst. Zool. 40:315-328.
    • (1991) Syst. Zool. , vol.40 , pp. 315-328
    • Maddison, D.R.1
  • 60
    • 0000058501 scopus 로고
    • Inferring phylogenies from mtDNA variation: Mitochondrial-gene trees versus nuclear-gene trees
    • Moore, W. S. 1995. Inferring phylogenies from mtDNA variation: Mitochondrial-gene trees versus nuclear-gene trees. Evolution 49:718-726.
    • (1995) Evolution , vol.49 , pp. 718-726
    • Moore, W.S.1
  • 62
    • 0035020732 scopus 로고    scopus 로고
    • A phylogeny inferred from large ribosomal subunit (26S) rDNA sequences suggests that Cuscuta is a derived member of Convolvulaceae
    • Neyland, R. 2001. A phylogeny inferred from large ribosomal subunit (26S) rDNA sequences suggests that Cuscuta is a derived member of Convolvulaceae. Brittonia 53:108-115.
    • (2001) Brittonia , vol.53 , pp. 108-115
    • Neyland, R.1
  • 64
    • 0028275088 scopus 로고
    • High rates of nucleotide substitution in nuclear small-subunit (18S) rRNA from holoparasitic flowering plants
    • Nickrent, D. L., and E. M. Starr. 1994. High rates of nucleotide substitution in nuclear small-subunit (18S) rRNA from holoparasitic flowering plants. J. Mol. Evol. 39:62-70.
    • (1994) J. Mol. Evol. , vol.39 , pp. 62-70
    • Nickrent, D.L.1    Starr, E.M.2
  • 66
    • 0002171845 scopus 로고    scopus 로고
    • Molecular studies of parasitic plants using ribosomal RNA
    • (Moreno et al., eds.), Dirección General de Investigación Agraria, Servicio de Publicaciones y Divulgación, Córdoba, Spain
    • Nickrent, D. L., and R. J. Duff. 1996. Molecular studies of parasitic plants using ribosomal RNA. Pages 28-52 in Advances in parasitic plant research (Moreno et al., eds.), Dirección General de Investigación Agraria, Servicio de Publicaciones y Divulgación, Córdoba, Spain.
    • (1996) Advances in Parasitic Plant Research , pp. 28-52
    • Nickrent, D.L.1    Duff, R.J.2
  • 68
    • 0000878797 scopus 로고
    • Monophyly of the Asteridae and identification of their major lineages inferred from DNA sequences of rbcL
    • Olmstead, R. G, H. J. Michaels, K. M. Scott, and J. D. Palmer. 1992. Monophyly of the Asteridae and identification of their major lineages inferred from DNA sequences of rbcL. Ann. Mo. Bot. Gard. 79:249-265.
    • (1992) Ann. Mo. Bot. Gard. , vol.79 , pp. 249-265
    • Olmstead, R.G.1    Michaels, H.J.2    Scott, K.M.3    Palmer, J.D.4
  • 69
    • 0000042335 scopus 로고
    • A chloroplast DNA phylogeny of the Solanaceae: Subfamilial relationships and characters evolution
    • Olmstead, R. G., and J. D. Palmer. 1992. A chloroplast DNA phylogeny of the Solanaceae: Subfamilial relationships and characters evolution. Ann. Mo. Bot. Gard. 79:346-360.
    • (1992) Ann. Mo. Bot. Gard. , vol.79 , pp. 346-360
    • Olmstead, R.G.1    Palmer, J.D.2
  • 70
    • 0033855453 scopus 로고    scopus 로고
    • Discovery of paralogous nuclear gene sequences coding for the second-largest subunit of RNA polymerase II (RPB2) and their phylogenetic utility in Gentianales of the asterids
    • Oxelman, B., and B. Bremer. 2000. Discovery of paralogous nuclear gene sequences coding for the second-largest subunit of RNA polymerase II (RPB2) and their phylogenetic utility in Gentianales of the asterids. Mol. Biol. Evol. 17:1131-1145.
    • (2000) Mol. Biol. Evol. , vol.17 , pp. 1131-1145
    • Oxelman, B.1    Bremer, B.2
  • 72
    • 0010539716 scopus 로고
    • Convolvulaceae
    • (A. Engler and K. Prantl, eds.)
    • Peter, A. 1891. Convolvulaceae. In (A. Engler and K. Prantl, eds.), Die Natürlichen Pflanzenfamilien 4:1-40.
    • (1891) Die Natürlichen Pflanzenfamilien , vol.4 , pp. 1-40
    • Peter, A.1
  • 73
    • 0010539716 scopus 로고
    • Convolvulaceae
    • A. Engler and K. Prantl, eds., Appendix
    • Peter, A. 1897. Convolvulaceae. In (A. Engler and K. Prantl, eds.), Die Natürlichen Pflanzenfamilien 4:375-377 (Appendix).
    • (1897) Die Natürlichen Pflanzenfamilien , vol.4 , pp. 375-377
    • Peter, A.1
  • 74
    • 0027494836 scopus 로고
    • MUST: A computer package of management utilities for sequences and trees
    • Philippe, H. 1993. MUST: A computer package of management utilities for sequences and trees. Nucleic Acids Res. 21:5264-5272.
    • (1993) Nucleic Acids Res. , vol.21 , pp. 5264-5272
    • Philippe, H.1
  • 75
    • 0031773680 scopus 로고    scopus 로고
    • ModelTest: Testing the model of DNA substitution
    • Posada, D., and K. A. Crandall. 1998. ModelTest: Testing the model of DNA substitution. Bioinformatics 14:817-818.
    • (1998) Bioinformatics , vol.14 , pp. 817-818
    • Posada, D.1    Crandall, K.A.2
  • 76
    • 0030928378 scopus 로고    scopus 로고
    • Seq-Gen: An application of Monte Carlo simulation of DNA sequence evolution along phylogenetic trees
    • Rambault, A., and N. C. Grassly. 1997. Seq-Gen: An application of Monte Carlo simulation of DNA sequence evolution along phylogenetic trees. Comput. Appl. Biosci. 13:235-238.
    • (1997) Comput. Appl. Biosci. , vol.13 , pp. 235-238
    • Rambault, A.1    Grassly, N.C.2
  • 77
    • 0029818407 scopus 로고    scopus 로고
    • Probability distribution of molecular evolutionary trees: A new method of phylogenetic inference
    • Rannala, B., and Z. Yang. 1996. Probability distribution of molecular evolutionary trees: A new method of phylogenetic inference. J. Mol. Evol. 43:304-311.
    • (1996) J. Mol. Evol. , vol.43 , pp. 304-311
    • Rannala, B.1    Yang, Z.2
  • 78
    • 0033679591 scopus 로고    scopus 로고
    • What is the relationship among Hernandiaceae, Lauraceae, and Monimiaceae, and why is this question so difficult to answer?
    • Renner, S. S., and A. S. Chanderbali. 2000. What is the relationship among Hernandiaceae, Lauraceae, and Monimiaceae, and why is this question so difficult to answer? Int. J. Plant Sci. 161:S109-S119.
    • (2000) Int. J. Plant Sci. , vol.161
    • Renner, S.S.1    Chanderbali, A.S.2
  • 79
    • 0010541120 scopus 로고
    • Genera Convolvulacearum
    • Roberty, G. 1952. Genera Convolvulacearum. Candollea 14:11-60.
    • (1952) Candollea , vol.14 , pp. 11-60
    • Roberty, G.1
  • 80
    • 0010610060 scopus 로고
    • Les genres des Convolvulacées (esquisse)
    • Roberty, G. 1964. Les genres des Convolvulacées (esquisse). Boissiera 10:129-156.
    • (1964) Boissiera , vol.10 , pp. 129-156
    • Roberty, G.1
  • 81
    • 0002788379 scopus 로고
    • Extraction of DNA from milligram amounts of fresh, herbarium and mummified plant tissues
    • Rogers, S. O., and A. J. Bendich. 1985. Extraction of DNA from milligram amounts of fresh, herbarium and mummified plant tissues. Plant Mol. Biol. 5:69-76.
    • (1985) Plant Mol. Biol. , vol.5 , pp. 69-76
    • Rogers, S.O.1    Bendich, A.J.2
  • 82
    • 0034014478 scopus 로고    scopus 로고
    • Toward a phylogenetic classification of the Lauraceae: Evidence from matK sequences
    • Rohwer, J. G. 2000. Toward a phylogenetic classification of the Lauraceae: Evidence from matK sequences. Syst. Biol. 25:60-71.
    • (2000) Syst. Biol. , vol.25 , pp. 60-71
    • Rohwer, J.G.1
  • 83
    • 0032087193 scopus 로고    scopus 로고
    • Biogeography of Sulawesian shrews: Testing for their origin ith a parametric bootstrap on molecular data
    • Ruedi, M., M. Auberson, and V. Savolainen. 1998. Biogeography of Sulawesian shrews: Testing for their origin ith a parametric bootstrap on molecular data. Mol. Phylogenet. Evol. 9:567-571.
    • (1998) Mol. Phylogenet. Evol. , vol.9 , pp. 567-571
    • Ruedi, M.1    Auberson, M.2    Savolainen, V.3
  • 84
    • 84959816047 scopus 로고
    • A theoretical study of the underestimation of branch lengths by the maximum parsimony principle
    • Saitou, N. 1989. A theoretical study of the underestimation of branch lengths by the maximum parsimony principle. Syst. Zool. 38:1-6.
    • (1989) Syst. Zool. , vol.38 , pp. 1-6
    • Saitou, N.1
  • 85
    • 0034351397 scopus 로고    scopus 로고
    • Parametric Phylogenies?
    • Sanderson, M. J., and J. Kim. 2000. Parametric Phylogenies? Syst. Biol. 49:817-829.
    • (2000) Syst. Biol. , vol.49 , pp. 817-829
    • Sanderson, M.J.1    Kim, J.2
  • 86
    • 0036623258 scopus 로고    scopus 로고
    • An approximately unbiased test of phylogenetic tree selection
    • Shimodaira, H. 2002. An approximately unbiased test of phylogenetic tree selection. Syst. Biol. 51:492-508.
    • (2002) Syst. Biol. , vol.51 , pp. 492-508
    • Shimodaira, H.1
  • 87
    • 0032766857 scopus 로고    scopus 로고
    • Multiple comparisons of log-likelihoods with applications to phylogenetic inferrence
    • Shimodaira, H., and M. Hasegawa. 1999. Multiple comparisons of log-likelihoods with applications to phylogenetic inferrence. Mol. Biol. Evol. 16:1114-1116.
    • (1999) Mol. Biol. Evol. , vol.16 , pp. 1114-1116
    • Shimodaira, H.1    Hasegawa, M.2
  • 88
    • 0041691561 scopus 로고    scopus 로고
    • Molecular phylogenetic evidence for the origin of Lennoaceae: A case of adelphoparasitism in the angiosperms?
    • Smith, R. A., D. M. Ferguson, T. J. Barkman, and C. W. dePamphilis. 2000. Molecular phylogenetic evidence for the origin of Lennoaceae: A case of adelphoparasitism in the angiosperms? Am. J. Bot. S87: 158.
    • (2000) Am. J. Bot. , vol.S87 , pp. 158
    • Smith, R.A.1    Ferguson, D.M.2    Barkman, T.J.3    DePamphilis, C.W.4
  • 90
    • 0036743053 scopus 로고    scopus 로고
    • Monophyly of the Convolvulaceae and circumscription of their major lineages based on DNA sequences of multiple chloroplast loci
    • Stefanović, S., L. Krueger, and R. G. Olmstead. 2002. Monophyly of the Convolvulaceae and circumscription of their major lineages based on DNA sequences of multiple chloroplast loci. Am. J. Bot. 89:1510-1522.
    • (2002) Am. J. Bot. , vol.89 , pp. 1510-1522
    • Stefanović, S.1    Krueger, L.2    Olmstead, R.G.3
  • 91
    • 0028073003 scopus 로고
    • The cDNA sequence of cytochrome b5 associated with cytokinin-induced haustoria formation in Cuscuta reflexa
    • Subramaniam, K., and S. Mahadevan. 1994. The cDNA sequence of cytochrome b5 associated with cytokinin-induced haustoria formation in Cuscuta reflexa. Gene 149:375-376.
    • (1994) Gene , vol.149 , pp. 375-376
    • Subramaniam, K.1    Mahadevan, S.2
  • 93
    • 0001336205 scopus 로고    scopus 로고
    • Phylogenetic inference
    • (D. M. Hillis, C. Moritz, and B. K. Mable, eds.). Sinauer, Sunderland, MA
    • Swofford, D. L., G. J. Olsen, P. J. Waddell, and D. M. Hillis. 1996. Phylogenetic inference. Pages 407-514 in Molecular systematics, 2nd ed. (D. M. Hillis, C. Moritz, and B. K. Mable, eds.). Sinauer, Sunderland, MA.
    • (1996) Molecular Systematics, 2nd Ed. , pp. 407-514
    • Swofford, D.L.1    Olsen, G.J.2    Waddell, P.J.3    Hillis, D.M.4
  • 94
    • 0026261665 scopus 로고
    • Universal primers for amplification of the noncoding regions of chloroplast DNA
    • Taberlet, P., L. Gielly, G. Pautou, and J. Bouvet. 1991. Universal primers for amplification of the noncoding regions of chloroplast DNA. Plant Mol. Biol. 17:1105-1109.
    • (1991) Plant Mol. Biol. , vol.17 , pp. 1105-1109
    • Taberlet, P.1    Gielly, L.2    Pautou, G.3    Bouvet, J.4
  • 96
    • 85034035186 scopus 로고
    • Systematic implications of relaxed functional constraints on the RUBISCO large subunit in parasitic plants of the Scrophulariaceae and Orobanchaceae
    • Wolfe, A. D., and C. W. dePamphilis. 1995. Systematic implications of relaxed functional constraints on the RUBISCO large subunit in parasitic plants of the Scrophulariaceae and Orobanchaceae. Am. J. Bot. S82:6.
    • (1995) Am. J. Bot. , vol.S82 , pp. 6
    • Wolfe, A.D.1    DePamphilis, C.W.2
  • 97
    • 0031127853 scopus 로고    scopus 로고
    • Alternate paths of evolution for the photosynthetic gene rbcL in four nonphotosynthetic species of Orobanche
    • Wolfe, A. D., and C. W. dePamphilis. 1997. Alternate paths of evolution for the photosynthetic gene rbcL in four nonphotosynthetic species of Orobanche. Plant Mol. Biol. 33:965-977.
    • (1997) Plant Mol. Biol. , vol.33 , pp. 965-977
    • Wolfe, A.D.1    DePamphilis, C.W.2
  • 98
    • 0031684776 scopus 로고    scopus 로고
    • The effect of relaxed functional constraints on the photosynthetic gene rbcL in photosynthetic and nonphotosynthetic parasitic plants
    • Wolfe, A. D., and C. W. dePamphilis. 1998. The effect of relaxed functional constraints on the photosynthetic gene rbcL in photosynthetic and nonphotosynthetic parasitic plants. Mol. Biol. Evol. 15:1243-1258.
    • (1998) Mol. Biol. Evol. , vol.15 , pp. 1243-1258
    • Wolfe, A.D.1    DePamphilis, C.W.2
  • 99
    • 0028214103 scopus 로고
    • Estimating the pattern of nucleotide substitution
    • Yang, Z. 1994. Estimating the pattern of nucleotide substitution. J. Mol. Evol. 39:105-111.
    • (1994) J. Mol. Evol. , vol.39 , pp. 105-111
    • Yang, Z.1
  • 100
    • 0033387629 scopus 로고    scopus 로고
    • The evolution of parasitism in Scrophulariaceae/Orobanchaceae: Plastid gene sequences refute an evolutionary transition series
    • Young, N. D., K. E. Steiner, and C. W. dePamphilis. 1999. The evolution of parasitism in Scrophulariaceae/Orobanchaceae: Plastid gene sequences refute an evolutionary transition series. Ann. Mo. Bot. Gard. 86:876-893.
    • (1999) Ann. Mo. Bot. Gard. , vol.86 , pp. 876-893
    • Young, N.D.1    Steiner, K.E.2    DePamphilis, C.W.3


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