Biogeography of Sulawesian Shrews: Testing for their Origin with a Parametric Bootstrap on Molecular Data

Molecular Phylogenetics and Evolution

Volumn 9, Issue 3, 1998, Pages 567-571

  Ruedi, Manuel ^a   Auberson, Muriel ^a   Savolainen, Vincent ^a  

^a UNIVERSITY OF LAUSANNE   (Switzerland)

Author keywords

Cytochrome b; Insectivora; Molecular phylogeny; Parametric bootstrap.; Parsimony; Sulawesi

Indexed keywords

CYTOCHROME B; MITOCHONDRIAL DNA;

ANIMAL; ARTICLE; BIOLOGICAL MODEL; CHEMISTRY; CLASSIFICATION; EUROPE; GENETICS; GEOGRAPHY; MOLECULAR EVOLUTION; NONPARAMETRIC TEST; PHYLOGENY; SEQUENCE ALIGNMENT; SEQUENCE HOMOLOGY; SHREW; SOUTHEAST ASIA; STATISTICAL MODEL;

ANIMALS; ASIA, SOUTHEASTERN; CYTOCHROME B GROUP; DNA, MITOCHONDRIAL; EUROPE; EVOLUTION, MOLECULAR; GEOGRAPHY; MODELS, GENETIC; MODELS, STATISTICAL; PHYLOGENY; SEQUENCE ALIGNMENT; SEQUENCE HOMOLOGY, NUCLEIC ACID; SHREWS; STATISTICS, NONPARAMETRIC;

EID: 0032087193     PISSN: 10557903     EISSN: None     Source Type: Journal    
DOI: 10.1006/mpev.1998.0487     Document Type: Article

References (31)

1. Anderson S., Bankier A. T., Barrell B. G., de Bruijn M. H. L., Coulson A. R., Drouin J., Eoeron I. C., Nierlich D. P., Roe B. A., Sanger F., Schreier P. H., Smith A. J. H., Staden R., Young I. G. Sequence organisation of the human mitochondrial genome. Nature. 290:1981;557-465.
2. Brown W. M., Prager E. M., Wang A., Wilson A. C. Mitochondrial DNA sequences of primates: tempo and mode of evolution. J. Mol. Evol. 18:1982;225-239.
3. Darlington P. J. Zoogeography: The Geological Distribution of Animals. 1957;Wiley, New York.
4. Efron B. Bootstrap confidence intervals for a class of parametric problems. Biometrika. 72:1985;45-58.
5. Faith D. P. Cladistic permutation tests for monophyly and nonmonophyly. Syst. Zool. 40:1991;366-375.
6. Faith D. P., Trueman J. W. H. When the topology-dependent permutation test (T-PTP) for monophyly returns significant support for monophyly, should that be equated with (a) rejecting a null hypothesis of nonmonophyly, (b) rejecting a null hypothesis of "no structure," (c) failing to falsify a hypothesis of monophyly, or (d) none of the above. Syst. Biol. 45:1996;580-586.
7. Felsenstein J. Confidence limits on phylogenies: An approach using the bootstrap. Evolution. 39:1985;783-791.
8. Hasegawa M., Kishino H., Yano T. Dating the human-ape splitting by a molecular clock of mitochondrial DNA. J. Mol. Evol. 21:1985;160-174.
9. Heaney L. R. Mammalian species richness on islands of the Sunda Shelf, Southeast Asia. Oecologia. 61:1984;11-17.
10. Heaney L. R. Zoogeographic evidence for middle and late Pleistocene land bridges to the Philippine Islands. Mod. Quater. Res. Southeast Asia. 9:1985;127-143.
11. Heaney L. R., Ruedi M. A preliminary analysis of biogeography and phylogeny ofCrocidura. Carnegie Mus. Nat. Hist. 18:1994;357-377.
12. Hillis D. M., Bull J. J. An empirical test of bootstrapping as a method for assessing confidence in phylogenetic analysis. Syst. Biol. 42:1993;182-192.
13. Hillis D. M., Huelsenbeck J. P. Support for dental HIV transmission. Nature. 369:1994;24-25.
14. Hillis D. M., Mable B. K., Moritz C. Applications of molecular systematics: The state of the field and a look to the future. Molecular Systematics. 1996;Sinauer, Sunderland. p. 515-543.
15. Huelsenbeck J. P., Hillis D. M., Jones R. Parametric bootstrapping in molecular phylogenetics: Applications and performance. Ferraris J. D., Palumbi S. R. Molecular Zoology: Advances, Strategies, and Protocols. 1996a;19-45 Wiley-Liss, New York.
16. Huelsenbeck J. P., Hillis D. M., Nielsen R. A likelihood-ratio test of monophyly. Syst. Biol. 45:1996b;546-558.
17. Kocher T. D., Thomas W. K., Meyer A., Edwards S. V., Pääbo S., Villablanca F. X., Wilson A. C. Dynamics of mitochondrial DNA evolution in animals: Amplification and sequencing with conserved primers. Proc. Natl. Acad. Sci. USA. 86:1989;6196-6200.
18. Krettek A., Gullberg A., Arnason U. Sequence analysis of the complete mitochondrial DNA molecule of the hedgehog,Erinaceus europaeus, J. Mol. Evol. 41:1995;952-957.
19. Kumar, S. Tamura, K. Nei, M. 1993, MEGA: Molecular Evolutionary Genetics Analysis, Pennsylvania State University, University Park.
20. Maddalena T., Ruedi M. Chromosomal evolution in the genusCrocidura. Carnegie Mus. Nat. Hist. 18:1994;335-344.
21. Miller G. S., Hollister N. Twenty new mammals collected by H.C. Raven in Celebes. Proc. Biol. Soc. Wash. 34:1921;93-104.
22. Musser G. The mammals of Sulawesi. Whitmore T. C. Biogeographical Evolution of the Malay Archipelago. 1987;73-91 Clarendon Press, Oxford.
23. Ruedi M. Taxonomic revision ofCrocidura. Zool. J. Linnean Soc. 115:1995;211-265.
24. Ruedi M. Phylogenetic evolution and biogeography of Southeast Asian shrews (genusCrocidura: Biol. J. Linnean Soc. 58:1996;197-219.
25. Ruedi M., Vogel P. Chromosomal evolution and zoogeographic origin of southeast Asian shrews (genusCrocidura. Experientia. 51:1995;174-178.
26. Ruedi M., Fumagalli L. Genetic structure of gymnures (GenusHylomys. J. Zoo. Syst. Evol. Res. 34:1996;153-162.
27. Sambrook J. E., Fritsch F., Maniatis T. Molecular Cloning: A Laboratory Manual. 1989;Cold Spring Harbor Laboratory Press, Cold Spring Harbor.
28. Swofford D. L., Thorne J. L., Felsenstein J., Wiegmann B. M. The topology-dependent permutation test for monophyly does not test for monophyly. Syst. Biol. 45:1996;575-579.
29. Tjia H. D. The Sunda Shelf, Southeast Asia. Z. Geomorph. N. F. 24:1980;405-427.
30. Wallace A. R. The Malay Archipelago. 1869.
31. Yang Z. Maximum likelihood estimation of phylogeny from DNA sequences when substitution rates differe over sites. Mol. Biol. Evol. 10:1993;1396-1401.