-
1
-
-
0029191637
-
Phytogeny of whales: Dependence of the inference on species sampling
-
ADACHI, J., and M. HASEGAWA. 1995. Phytogeny of whales: dependence of the inference on species sampling. Mol. Biol. Evol. 12:177-179.
-
(1995)
Mol. Biol. Evol.
, vol.12
, pp. 177-179
-
-
Adachi, J.1
Hasegawa, M.2
-
2
-
-
0003296611
-
The continuum random tree III
-
ALDOUS, D. 1993. The continuum random tree III. Ann. Prob. 21:248-289.
-
(1993)
Ann. Prob.
, vol.21
, pp. 248-289
-
-
Aldous, D.1
-
3
-
-
25744432926
-
A tree-based scaling exponent for random cluster models
-
ALDOUS, D., and B. LARGET. 1992. A tree-based scaling exponent for random cluster models. J. Phys. A Math. Gen. 25:L1065-L1069.
-
(1992)
J. Phys. A Math. Gen.
, vol.25
-
-
Aldous, D.1
Larget, B.2
-
4
-
-
38249006937
-
Comparison between the 12S rRNA, 16S rRNA, NADH1 and COI genes of sperm and fin whale mitochondrial DNA
-
ARNASON, U., S. GRETARSDOTTIR, and A. GULLBERG. 1993. Comparison between the 12S rRNA, 16S rRNA, NADH1 and COI genes of sperm and fin whale mitochondrial DNA. Biochem. Syst. Ecol. 21:115-122.
-
(1993)
Biochem. Syst. Ecol.
, vol.21
, pp. 115-122
-
-
Arnason, U.1
Gretarsdottir, S.2
Gullberg, A.3
-
5
-
-
0028118741
-
Relationship of baleen whales established by cytochrome b gene sequence comparison
-
ÁRNASON, U., and A. GULLBERG. 1994. Relationship of baleen whales established by cytochrome b gene sequence comparison. Nature 367:726-728.
-
(1994)
Nature
, vol.367
, pp. 726-728
-
-
Árnason, U.1
Gullberg, A.2
-
6
-
-
0029794480
-
On the interpretation of bootstrap trees: Appropriate threshold of clade selection and induced gain
-
BERRY, V., and O. GASCUEL. 1996. On the interpretation of bootstrap trees: appropriate threshold of clade selection and induced gain. Mol. Biol. Evol. 13:999-1011.
-
(1996)
Mol. Biol. Evol.
, vol.13
, pp. 999-1011
-
-
Berry, V.1
Gascuel, O.2
-
8
-
-
0003516147
-
-
Cambridge University Press, Cambridge, England
-
DURBIN, R., S. EDDY, A. KROGH, and G. MITCHESON. 1998. Biological sequence analysis: probabilistic models of proteins and nucleic acids. Cambridge University Press, Cambridge, England.
-
(1998)
Biological Sequence Analysis: Probabilistic Models of Proteins and Nucleic Acids
-
-
Durbin, R.1
Eddy, S.2
Krogh, A.3
Mitcheson, G.4
-
9
-
-
0030581603
-
Bootstrap confidence levels for phylogenetic trees
-
EFRON, B., E. HALLORAN, and S. HOLMES. 1996. Bootstrap confidence levels for phylogenetic trees. Proc. Natl. Acad. Sci. 93:13429-13434.
-
(1996)
Proc. Natl. Acad. Sci.
, vol.93
, pp. 13429-13434
-
-
Efron, B.1
Halloran, E.2
Holmes, S.3
-
11
-
-
0001027766
-
Statistical inference of phylogenies
-
FELSENSTEIN, J. 1983. Statistical inference of phylogenies (with discussion). J. R. Stat. Soc. A 146:246-272.
-
(1983)
J. R. Stat. Soc. A
, vol.146
, pp. 246-272
-
-
Felsenstein, J.1
-
12
-
-
0000461280
-
Confidence limits on phylogenies: An approach using the bootstrap
-
_. 1985. Confidence limits on phylogenies: an approach using the bootstrap. Evolution 39:783-791.
-
(1985)
Evolution
, vol.39
, pp. 783-791
-
-
-
13
-
-
0003437299
-
-
Distributed by the author, Department of Genetics, University of Washington, Seattle
-
_. 1995. PHYLIP (phylogeny inference package). Version 3.572c. Distributed by the author, Department of Genetics, University of Washington, Seattle.
-
(1995)
PHYLIP (Phylogeny Inference Package). Version 3.572c
-
-
-
14
-
-
12044259827
-
Is there something wrong with the bootstrap? A reply to Hillis and Bull
-
FELSENSTEIN, J., and H. KISHINO. 1993. Is there something wrong with the bootstrap? A reply to Hillis and Bull. Syst. Biol. 42:193-200.
-
(1993)
Syst. Biol.
, vol.42
, pp. 193-200
-
-
Felsenstein, J.1
Kishino, H.2
-
15
-
-
0004012196
-
-
Chapman and Hall, London
-
GELMAN, A., J. CARLIN, H. STERN, and D. RUBIN. 1995. Bayesian data analysis. Chapman and Hall, London.
-
(1995)
Bayesian Data Analysis
-
-
Gelman, A.1
Carlin, J.2
Stern, H.3
Rubin, D.4
-
16
-
-
0032333313
-
Adaptive Markov chain Monte Carlo through regeneration
-
GILKS, W., G. ROBERTS, and S. SAHU. 1998. Adaptive Markov chain Monte Carlo through regeneration. J. Am. Stat. Assoc. 93:1045-1054.
-
(1998)
J. Am. Stat. Assoc.
, vol.93
, pp. 1045-1054
-
-
Gilks, W.1
Roberts, G.2
Sahu, S.3
-
17
-
-
0022376704
-
Dating the human-ape splitting by a molecular clock of mitochondrial DNA
-
HASEGAWA, M., H. KISHINO, and T. YANO. 1985. Dating the human-ape splitting by a molecular clock of mitochondrial DNA. J. Mol. Evol. 22:160-174.
-
(1985)
J. Mol. Evol.
, vol.22
, pp. 160-174
-
-
Hasegawa, M.1
Kishino, H.2
Yano, T.3
-
18
-
-
77956890234
-
Monte Carlo sampling methods using Markov chains and their applications
-
HASTINGS, W. 1970. Monte Carlo sampling methods using Markov chains and their applications. Biometrika 57:97-109.
-
(1970)
Biometrika
, vol.57
, pp. 97-109
-
-
Hastings, W.1
-
19
-
-
0024120079
-
Molecular phylogeny and evolution of primate mitochondrial DNA
-
HAYASAKA, K., T. GOJOBORI, and S. HORAI. 1988. Molecular phylogeny and evolution of primate mitochondrial DNA. Mol. Biol. Evol. 5:626-644.
-
(1988)
Mol. Biol. Evol.
, vol.5
, pp. 626-644
-
-
Hayasaka, K.1
Gojobori, T.2
Horai, S.3
-
21
-
-
0029027992
-
Estimating effective population size and mutation rate from sequence data using Metropolis-Hastings sampling
-
KUHNER, M., J. YAMATO, and J. FELSENSTEIN. 1995. Estimating effective population size and mutation rate from sequence data using Metropolis-Hastings sampling. Genetics 140:1421-1430.
-
(1995)
Genetics
, vol.140
, pp. 1421-1430
-
-
Kuhner, M.1
Yamato, J.2
Felsenstein, J.3
-
24
-
-
0031498410
-
Phylogenetic inference for binary data on dendograms using Markov chain Monte Carlo
-
MAU, B., and M. A. NEWTON. 1997. Phylogenetic inference for binary data on dendograms using Markov chain Monte Carlo. J. Comp. Graph. Stat. 6:122-131.
-
(1997)
J. Comp. Graph. Stat.
, vol.6
, pp. 122-131
-
-
Mau, B.1
Newton, M.A.2
-
25
-
-
0032906031
-
Bayesian phylogenetic inference via Markov chain Monte Carlo methods
-
MAU, B., M. A. NEWTON, and B. LARGET. 1999. Bayesian phylogenetic inference via Markov chain Monte Carlo methods. Biometrics 55:1-12.
-
(1999)
Biometrics
, vol.55
, pp. 1-12
-
-
Mau, B.1
Newton, M.A.2
Larget, B.3
-
26
-
-
5744249209
-
Equation of state calculations by fast computing machines
-
METROPOLIS, N., A. ROSENBLUTH, M. ROSENBLUTH, A. TELLER, and E. TELLER. 1953. Equation of state calculations by fast computing machines. J. Chem. Phys. 21:1087-1092.
-
(1953)
J. Chem. Phys.
, vol.21
, pp. 1087-1092
-
-
Metropolis, N.1
Rosenbluth, A.2
Rosenbluth, M.3
Teller, A.4
Teller, E.5
-
27
-
-
0028151699
-
Phylogeny of all major groups of cetaceans based on DNA sequences from three mitochondrial genes
-
MILINKOVITCH, M. C., A. MEYERS, and J. R. POWELL. 1994. Phylogeny of all major groups of cetaceans based on DNA sequences from three mitochondrial genes. Mol. Biol. Evol. 11:939-948.
-
(1994)
Mol. Biol. Evol.
, vol.11
, pp. 939-948
-
-
Milinkovitch, M.C.1
Meyers, A.2
Powell, J.R.3
-
28
-
-
0029303863
-
Novel phylogeny of whales revisited but not revised
-
MILINKOVITCH, M. C., G. ORTÍ, and A. MEYERS. 1995. Novel phylogeny of whales revisited but not revised. Mol. Biol. Evol. 12:518-520.
-
(1995)
Mol. Biol. Evol.
, vol.12
, pp. 518-520
-
-
Milinkovitch, M.C.1
Ortí, G.2
Meyers, A.3
-
29
-
-
33746439442
-
Bootstrapping phylogenies: Large deviations and dispersion effects
-
NEWTON, M. 1996. Bootstrapping phylogenies: large deviations and dispersion effects. Biometrika 83:315-328.
-
(1996)
Biometrika
, vol.83
, pp. 315-328
-
-
Newton, M.1
-
30
-
-
0001021240
-
Markov chain Monte Carlo for the Bayesian analysis of evolutionary trees from aligned molecular sequences
-
F. SEILLIER-MOSEIWITCH, T. P. SPEED, and M. WATERMAN, eds. Monograph Series of the Institute of Mathematical Statistics (in press)
-
NEWTON, M., B. MAU, and B. LARGET. 1999. Markov chain Monte Carlo for the Bayesian analysis of evolutionary trees from aligned molecular sequences. In F. SEILLIER-MOSEIWITCH, T. P. SPEED, and M. WATERMAN, eds. Statistics in molecular biology. Monograph Series of the Institute of Mathematical Statistics (in press).
-
(1999)
Statistics in Molecular Biology
-
-
Newton, M.1
Mau, B.2
Larget, B.3
-
31
-
-
0029818407
-
Probability distribution of molecular evolutionary trees: A new method of phylogenetic inference
-
RANNALA, B., and Z. YANG. 1996. Probability distribution of molecular evolutionary trees: a new method of phylogenetic inference. J. Mol. Evol. 43:304-311.
-
(1996)
J. Mol. Evol.
, vol.43
, pp. 304-311
-
-
Rannala, B.1
Yang, Z.2
-
32
-
-
0003909896
-
-
Department of Mathematics and Computer Science, Duquesne University, Pittsburgh, Pa
-
SIMON, D., and B. LARGET. 1998. Bayesian analysis in molecular biology and evolution (BAMBE). Version 1.01 beta. Department of Mathematics and Computer Science, Duquesne University, Pittsburgh, Pa.
-
(1998)
Bayesian Analysis in Molecular Biology and Evolution (BAMBE). Version 1.01 Beta
-
-
Simon, D.1
Larget, B.2
-
33
-
-
0003053548
-
Bayesian computation via the Gibbs sampler and related Markov chain Monte Carlo methods
-
SMITH, A., and G. ROBERTS. 1993. Bayesian computation via the Gibbs sampler and related Markov chain Monte Carlo methods. J. R. Stat. Soc. B 55:3-23.
-
(1993)
J. R. Stat. Soc. B
, vol.55
, pp. 3-23
-
-
Smith, A.1
Roberts, G.2
-
34
-
-
0029836454
-
Quartet puzzling: A quartet maximum likelihood method for reconstructing tree topologies
-
STRIMMER, K., and A. VON HAESELER. 1996. Quartet puzzling: a quartet maximum likelihood method for reconstructing tree topologies. Mol. Biol. Evol. 13:964-969.
-
(1996)
Mol. Biol. Evol.
, vol.13
, pp. 964-969
-
-
Strimmer, K.1
Von Haeseler, A.2
-
35
-
-
0000576595
-
Markov chains for exploring posterior distributions
-
TIERNEY, L. 1994. Markov chains for exploring posterior distributions. Ann. Stat. 22:1701-1762.
-
(1994)
Ann. Stat.
, vol.22
, pp. 1701-1762
-
-
Tierney, L.1
-
37
-
-
0030749810
-
Bayesian phylogenetic inference using DNa sequences: A Markov chain Monte Carlo method
-
YANG, Z., and B. RANNALA. 1997. Bayesian phylogenetic inference using DNA sequences: a Markov chain Monte Carlo method. Mol. Biol. Evol. 14:717-724.
-
(1997)
Mol. Biol. Evol.
, vol.14
, pp. 717-724
-
-
Yang, Z.1
Rannala, B.2
|