-
1
-
-
0034065833
-
Modification of alternative splicing pathways as a potential approach to chemotherapy
-
Mercatante,D. and Kole,R. (2000) Modification of alternative splicing pathways as a potential approach to chemotherapy. Pharmacol. Ther., 85, 237-243.
-
(2000)
Pharmacol. Ther.
, vol.85
, pp. 237-243
-
-
Mercatante, D.1
Kole, R.2
-
2
-
-
1842635464
-
Regulation of alternative RNA splicing by exon definition and exon sequences in viral and mammalian gene expression
-
Zheng,Z.M. (2004) Regulation of alternative RNA splicing by exon definition and exon sequences in viral and mammalian gene expression. J. Biomed. Sci., 11, 278-294.
-
(2004)
J. Biomed. Sci.
, vol.11
, pp. 278-294
-
-
Zheng, Z.M.1
-
3
-
-
4444291467
-
A non-EST-based method for exon-skipping prediction
-
Sorek,R., Shemesh,R., Cohen,Y., Basechess,O., Ast,G. and Shamir,R. (2004) A non-EST-based method for exon-skipping prediction. Genome Res., 14, 1617-1623.
-
(2004)
Genome Res.
, vol.14
, pp. 1617-1623
-
-
Sorek, R.1
Shemesh, R.2
Cohen, Y.3
Basechess, O.4
Ast, G.5
Shamir, R.6
-
4
-
-
2442694425
-
Transcriptome and genome conservation of alternative splicing events in humans and mice
-
Sugnet,C.W., Kent,W.J., Ares,M.Jr and Haussler,D. (2004) Transcriptome and genome conservation of alternative splicing events in humans and mice. Pac. Symp. Biocomput., 66-77.
-
(2004)
Pac. Symp. Biocomput.
, pp. 66-77
-
-
Sugnet, C.W.1
Kent, W.J.2
Ares Jr., M.3
Haussler, D.4
-
5
-
-
0038486897
-
Intronic sequences flanking alternatively spliced exons are conserved between human and mouse
-
Sorek,R. and Ast,G. (2003) Intronic sequences flanking alternatively spliced exons are conserved between human and mouse. Genome Res., 13, 1631-1637.
-
(2003)
Genome Res.
, vol.13
, pp. 1631-1637
-
-
Sorek, R.1
Ast, G.2
-
6
-
-
0345118944
-
Evolutionary conservation of a 2-kb intronic sequence flanking a tissue-specific alternative exon in the PTBP2 gene
-
Rahman,L., Bliskovski,V., Kaye,F.J. and Zajac-Kaye,M. (2004) Evolutionary conservation of a 2-kb intronic sequence flanking a tissue-specific alternative exon in the PTBP2 gene. Genomics, 83, 76-84.
-
(2004)
Genomics
, vol.83
, pp. 76-84
-
-
Rahman, L.1
Bliskovski, V.2
Kaye, F.J.3
Zajac-Kaye, M.4
-
7
-
-
1342346035
-
In NF1, CFTR, PER3, CARS and SYT7, alternatively included exons show higher conservation of surrounding intron sequences than constitutive exons
-
Kaufmann,D., Kenner,O., Nurnberg,P., Vogel,W. and Bartelt,B. (2004) In NF1, CFTR, PER3, CARS and SYT7, alternatively included exons show higher conservation of surrounding intron sequences than constitutive exons. Eur. J. Hum. Genet., 12, 139-149.
-
(2004)
Eur. J. Hum. Genet.
, vol.12
, pp. 139-149
-
-
Kaufmann, D.1
Kenner, O.2
Nurnberg, P.3
Vogel, W.4
Bartelt, B.5
-
8
-
-
16344396421
-
Accurate identification of alternatively spliced exons using support vector machine
-
Dror,G., Sorek,R. and Shamir,R. (2005) Accurate identification of alternatively spliced exons using support vector machine. Bioinformatics, 21, 897-901.
-
(2005)
Bioinformatics
, vol.21
, pp. 897-901
-
-
Dror, G.1
Sorek, R.2
Shamir, R.3
-
9
-
-
9644278038
-
Widespread occurrence of alternative splicing at NAGNAG acceptors contributes to proteome plasticity
-
Hiller,M., Huse,K., Szafranski,K., Jahn,N., Hampe,J., Schreiber,S., Backofen,R. and Platzer,M. (2004) Widespread occurrence of alternative splicing at NAGNAG acceptors contributes to proteome plasticity. Nature Genet., 36, 1255-1257.
-
(2004)
Nature Genet.
, vol.36
, pp. 1255-1257
-
-
Hiller, M.1
Huse, K.2
Szafranski, K.3
Jahn, N.4
Hampe, J.5
Schreiber, S.6
Backofen, R.7
Platzer, M.8
-
10
-
-
25444516516
-
Frequent occurrence of protein isoforms with or without a single amino acid residue by subtle alternative splicing: The case of Gln in DRPLA affects subcellular localization of the products
-
Tadokoro,K., Yamazaki-Inoue,M., Tachibana,M., Fujishiro,M., Nagao,K., Toyoda,M., Ozaki,M., Ono,M., Miki,N., Miyashita,T. et al. (2005) Frequent occurrence of protein isoforms with or without a single amino acid residue by subtle alternative splicing: The case of Gln in DRPLA affects subcellular localization of the products. J. Hum. Genet., 50, 382-394.
-
(2005)
J. Hum. Genet.
, vol.50
, pp. 382-394
-
-
Tadokoro, K.1
Yamazaki-Inoue, M.2
Tachibana, M.3
Fujishiro, M.4
Nagao, K.5
Toyoda, M.6
Ozaki, M.7
Ono, M.8
Miki, N.9
Miyashita, T.10
-
11
-
-
55449137900
-
Protein modularity of alternatively spliced exons is associated with tissue-specific regulation of alternative splicing
-
Xing,Y. and Lee,C.J. (2005) Protein modularity of alternatively spliced exons is associated with tissue-specific regulation of alternative splicing. PLoS Genet., 1, e34.
-
(2005)
PLoS Genet.
, vol.1
-
-
Xing, Y.1
Lee, C.J.2
-
12
-
-
0027214101
-
Scanning and competition between AGs are involved in 3′ splice site selection in mammalian introns
-
Smith,C.W., Chu,T.T. and Nadal-Ginard,B. (1993) Scanning and competition between AGs are involved in 3′ splice site selection in mammalian introns. Mol. Cell. Biol., 13, 4939-4952.
-
(1993)
Mol. Cell. Biol.
, vol.13
, pp. 4939-4952
-
-
Smith, C.W.1
Chu, T.T.2
Nadal-Ginard, B.3
-
13
-
-
0024470631
-
Scanning from an independently specified branch point defines the 3′ splice site of mammalian introns
-
Smith,C.M., Porro,E.B., Patton,J.G. and Nadal-Ginard,B. (1989) Scanning from an independently specified branch point defines the 3′ splice site of mammalian introns. Nature, 342, 243-247.
-
(1989)
Nature
, vol.342
, pp. 243-247
-
-
Smith, C.M.1
Porro, E.B.2
Patton, J.G.3
Nadal-Ginard, B.4
-
14
-
-
0035133535
-
An upstream AG determines whether a downstream AG is selected during catalytic step II of splicing
-
Chua,K. and Reed,R. (2001) An upstream AG determines whether a downstream AG is selected during catalytic step II of splicing. Mol. Cell. Biol., 21, 1509-1514.
-
(2001)
Mol. Cell. Biol.
, vol.21
, pp. 1509-1514
-
-
Chua, K.1
Reed, R.2
-
15
-
-
0038701605
-
The birth of an alternatively spliced exon: 3′ splice-site selection in Alu exons
-
Lev-Maor,G., Sorek,R., Shomron,N. and Ast,G. (2003) The birth of an alternatively spliced exon: 3′ splice-site selection in Alu exons. Science, 300, 1288-1291.
-
(2003)
Science
, vol.300
, pp. 1288-1291
-
-
Lev-Maor, G.1
Sorek, R.2
Shomron, N.3
Ast, G.4
-
16
-
-
0037417781
-
SRp55 is a regulator of calcitonin/CGRP alternative RNA splicing
-
Tran,Q. and Roesser,J.R. (2003) SRp55 is a regulator of calcitonin/CGRP alternative RNA splicing. Biochemistry, 42, 951-957.
-
(2003)
Biochemistry
, vol.42
, pp. 951-957
-
-
Tran, Q.1
Roesser, J.R.2
-
17
-
-
3142665525
-
GOstat: Find statistically overrepresented gene ontologies within a group of genes
-
Beissbarth,T. and Speed,T.P. (2004) GOstat: Find statistically overrepresented gene ontologies within a group of genes. Bioinformatics, 20, 1464-1465.
-
(2004)
Bioinformatics
, vol.20
, pp. 1464-1465
-
-
Beissbarth, T.1
Speed, T.P.2
-
18
-
-
2142738304
-
WebLogo: A sequence logo generator
-
Crooks,G.E., Hon,G., Chandonia,J.M. and Brenner,S.E. (2004) WebLogo: A sequence logo generator. Genome Res., 14, 1188-1190.
-
(2004)
Genome Res.
, vol.14
, pp. 1188-1190
-
-
Crooks, G.E.1
Hon, G.2
Chandonia, J.M.3
Brenner, S.E.4
-
19
-
-
0031921640
-
Statistical features of human exons and their flanking regions
-
Zhang,M.Q. (1998) Statistical features of human exons and their flanking regions. Hum. Mol. Genet., 7, 919-932.
-
(1998)
Hum. Mol. Genet.
, vol.7
, pp. 919-932
-
-
Zhang, M.Q.1
-
20
-
-
0345306602
-
Large scale study of protein domain distribution in the context of alternative splicing
-
Liu,S. and Altman,R.B. (2003) Large scale study of protein domain distribution in the context of alternative splicing. Nucleic Acids Res., 31, 4828-4835.
-
(2003)
Nucleic Acids Res.
, vol.31
, pp. 4828-4835
-
-
Liu, S.1
Altman, R.B.2
-
21
-
-
0025890081
-
Positive autoregulation of sex-lethal by alternative splicing maintains the female determined state in Drosophila
-
Bell,L.R., Horabin,J.I., Schedl,P. and Cline,T.W. (1991) Positive autoregulation of sex-lethal by alternative splicing maintains the female determined state in Drosophila. Cell, 65, 229-239.
-
(1991)
Cell
, vol.65
, pp. 229-239
-
-
Bell, L.R.1
Horabin, J.I.2
Schedl, P.3
Cline, T.W.4
-
22
-
-
0029860454
-
An alternative splicing event in the Pax-3 paired domain identifies the linker region as a key determinant of paired domain DNA-binding activity
-
Vogan,K.J., Underhill,D.A. and Gros,P. (1996) An alternative splicing event in the Pax-3 paired domain identifies the linker region as a key determinant of paired domain DNA-binding activity. Mol. Cell. Biol., 16, 6677-6686.
-
(1996)
Mol. Cell. Biol.
, vol.16
, pp. 6677-6686
-
-
Vogan, K.J.1
Underhill, D.A.2
Gros, P.3
-
23
-
-
0022974809
-
Sequence requirements for splicing of higher eukaryotic nuclear pre-mRNA
-
Aebi,M., Hornig,H., Padgett,R.A., Reiser,J. and Weissmann,C. (1986) Sequence requirements for splicing of higher eukaryotic nuclear pre-mRNA. Cell, 47, 555-565.
-
(1986)
Cell
, vol.47
, pp. 555-565
-
-
Aebi, M.1
Hornig, H.2
Padgett, R.A.3
Reiser, J.4
Weissmann, C.5
-
24
-
-
0031719371
-
Protein-RNA interactions in the U5 snRNP of Saccharomyces cerevisiae
-
Dix,I., Russell,C.S., O'Keefe,R.T., Newman,A.J. and Beggs,J.D. (1998) Protein-RNA interactions in the U5 snRNP of Saccharomyces cerevisiae. RNA, 4, 1675-1686.
-
(1998)
RNA
, vol.4
, pp. 1675-1686
-
-
Dix, I.1
Russell, C.S.2
O'Keefe, R.T.3
Newman, A.J.4
Beggs, J.D.5
-
25
-
-
0030694848
-
Crosslinking of the U5 snRNP-specific 116-kDa protein to RNA hairpins that block step 2 of splicing
-
Liu,Z.R., Laggerbauer,B., Luhrmann,R. and Smith,C.W. (1997) Crosslinking of the U5 snRNP-specific 116-kDa protein to RNA hairpins that block step 2 of splicing. RNA, 3, 1207-1219.
-
(1997)
RNA
, vol.3
, pp. 1207-1219
-
-
Liu, Z.R.1
Laggerbauer, B.2
Luhrmann, R.3
Smith, C.W.4
-
26
-
-
24944433166
-
Distribution of SR protein exonic splicing enhancer motifs in human protein-coding genes
-
Wang,J., Smith,P.J., Krainer,A.R. and Zhang,M.Q. (2005) Distribution of SR protein exonic splicing enhancer motifs in human protein-coding genes. Nucleic Acids Res., 33, 5053-5062.
-
(2005)
Nucleic Acids Res.
, vol.33
, pp. 5053-5062
-
-
Wang, J.1
Smith, P.J.2
Krainer, A.R.3
Zhang, M.Q.4
-
27
-
-
3242888697
-
RESCUE-ESE identifies candidate exonic splicing enhancers in vertebrate exons
-
Fairbrother,W.G., Yeo,G.W., Yeh,R., Goldstein,P., Mawson,M., Sharp,P.A. and Burge,C.B. (2004) RESCUE-ESE identifies candidate exonic splicing enhancers in vertebrate exons. Nucleic Acids Res., 32, W187-W190.
-
(2004)
Nucleic Acids Res.
, vol.32
-
-
Fairbrother, W.G.1
Yeo, G.W.2
Yeh, R.3
Goldstein, P.4
Mawson, M.5
Sharp, P.A.6
Burge, C.B.7
-
28
-
-
0042242582
-
ESEfinder: A web resource to identify exonic splicing enhancers
-
Cartegni,L., Wang,J., Zhu,Z., Zhang,M.Q. and Krainer,A.R. (2003) ESEfinder: A web resource to identify exonic splicing enhancers. Nucleic Acids Res., 31, 3568-3571.
-
(2003)
Nucleic Acids Res.
, vol.31
, pp. 3568-3571
-
-
Cartegni, L.1
Wang, J.2
Zhu, Z.3
Zhang, M.Q.4
Krainer, A.R.5
-
29
-
-
0036429269
-
Finding signals that regulate alternative splicing in the post-genomic era
-
reviews0008
-
Ladd,A.N. and Cooper,T.A. (2002) Finding signals that regulate alternative splicing in the post-genomic era. Genome Biol., 3, reviews0008.
-
(2002)
Genome Biol.
, vol.3
-
-
Ladd, A.N.1
Cooper, T.A.2
-
30
-
-
17644370601
-
Biased codon usage near intron-exon junctions: Selection on splicing enhancers, splice-site recognition or something else?
-
Chamary,J.V. and Hurst,L.D. (2005) Biased codon usage near intron-exon junctions: Selection on splicing enhancers, splice-site recognition or something else? Trends Genet., 21, 256-259.
-
(2005)
Trends Genet.
, vol.21
, pp. 256-259
-
-
Chamary, J.V.1
Hurst, L.D.2
-
31
-
-
10944245056
-
Alternative splicing of conserved exons is frequently species-specific in human and mouse
-
Pan,Q., Bakowski,M.A., Morris,Q., Zhang,W., Frey,B.J., Hughes,T.R. and Blencowe,B.J. (2005) Alternative splicing of conserved exons is frequently species-specific in human and mouse. Trends Genet., 21, 73-77.
-
(2005)
Trends Genet.
, vol.21
, pp. 73-77
-
-
Pan, Q.1
Bakowski, M.A.2
Morris, Q.3
Zhang, W.4
Frey, B.J.5
Hughes, T.R.6
Blencowe, B.J.7
|