RESCUE-ESE identifies candidate exonic splicing enhancers in vertebrate exons

Nucleic Acids Research

Volumn 32, Issue WEB SERVER ISS., 2004, Pages

  Fairbrother, William G ^a   Yeo, Gene W ^a   Yeh, Rufang ^b   Goldstein, Paul ^c   Mawson, Matthew ^a   Sharp, Phillip A ^a,d   Burge, Christopher B ^a  

^a MASSACHUSETTS INSTITUTE OF TECHNOLOGY   (United States)

^b UNIVERSITY OF CALIFORNIA   (United States)

^c Univ of California San Francisco ^*  (United States)

^d MASSACHUSETTS INSTITUTE OF TECHNOLOGY   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

MESSENGER RNA; RNA;

ARTICLE; COMPUTER PROGRAM; ENHANCER REGION; EXON; GENE DISRUPTION; GENE EXPRESSION; GENE FUNCTION; GENE SEQUENCE; GENETIC CODE; GENETIC TRANSCRIPTION; GENETIC VARIABILITY; HUMAN; INTERNET; MOUSE; NONHUMAN; ONLINE SYSTEM; PHENOTYPE; PREDICTION; PRIORITY JOURNAL; PUFFER FISH; RNA SPLICING; SIGNAL PROCESSING; SIGNAL TRANSDUCTION; SPECIES DIFFERENCE; VERTEBRATE; ZEBRA FISH;

ANIMALS; EXONS; HUMANS; INTERNET; MICE; REGULATORY SEQUENCES, RIBONUCLEIC ACID; RNA PRECURSORS; RNA SPLICING; RNA, MESSENGER; SEQUENCE ANALYSIS, DNA; SEQUENCE ANALYSIS, RNA; SOFTWARE; TETRAODONTIFORMES; ZEBRAFISH;

DANIO RERIO; TETRAODONTIDAE; VERTEBRATA;

EID: 3242888697     PISSN: 03051048     EISSN: None     Source Type: Journal    
DOI: 10.1093/nar/gkh393     Document Type: Article

References (10)

1. Fairbrother,W.G., Yeh,R.F., Sharp,P.A. and Burge,C.B. (2002) Predictive identification of exonic splicing enhancers in human genes. Science, 297, 1007-1013.
2. Liu,H.X., Zhang,M. and Krainer,A.R. (1998) Identification of functional exonic splicing enhancer motifs recognized by individual SR proteins. Genes Dev., 12, 1998-2012.
3. Tian,H. and Kole,R. (1995) Selection of novel exon recognition elements from a pool of random sequences. Mol. Cell Biol., 15, 6291-6298.
4. Schaal,T.D. and Maniatis,T. (1999) Selection and characterization of pre-mRNA splicing enhancers: identification of novel SR protein-specific enhancer sequences. Mol. Cell Biol., 19, 1705-1719.
5. Coulter,L.R., Landree,M.A. and Cooper,T.A. (1997) Identification of a new class of exonic splicing enhancers by in vivo selection. Mol. Cell Biol., 17, 2143-2150.
6. Graveley,B.R. (2000) Sorting outthe complexity of SR protein functions. RNA, 6, 1197-1211.
7. Kan,J.L. and Green,M.R. (1999) Pre-mRNA splicing of IgM exons M1 and M2 is directed by a juxtaposed splicing enhancer and inhibitor. Genes Dev., 13, 462-471.
8. Cartegni,L., Wang,J., Zhu,Z., Zhang,M.Q. and Krainer,A.R. (2003) ESEfinder: a web resource to identify exonic splicing enhancers. Nucleic Acids Res., 31, 3568-3571.
9. Cartegni,L., Chew,S.L. and Krainer,A.R. (2002) Listening to silence and understanding nonsense: exonic mutations that affect splicing. Nature Rev. Genet., 3, 285-298.
10. Valentine, C.R. (1998) The association of nonsense codons with exon skipping. Mutat. Res., 411, 87-117.