Charge transfer through the nucleosome: A theoretical approach

Physical Chemistry Chemical Physics

Volumn 6, Issue 12, 2004, Pages 3160-3166

  Cramer, Tobias ^a   Krapf, Sebastian ^a   Koslowski, Thorsten ^a  

^a UNIVERSITY OF FREIBURG   (Germany)

Author keywords

[No Author keywords available]

Indexed keywords

DNA;

ARTICLE; CORRELATION COEFFICIENT; DNA STRUCTURE; ENERGY TRANSFER; GEOMETRY; NUCLEOSOME; POLARIZATION; QUANTUM CHEMISTRY; STRUCTURE ANALYSIS; SURFACE PROPERTY; THEORETICAL STUDY; TRANSPORT KINETICS;

EID: 3142731901     PISSN: 14639076     EISSN: None     Source Type: Journal    
DOI: 10.1039/b402410a     Document Type: Article

References (61)

1. (a) C. R. Treadway, M. G. Hill and J. K. Barton, Chem. Phys., 2002, 281, 409;
2. (b) S. Delaney and J. K. Barton, J. Org. Chem., 2003, 68, 6475.
3. H.-W. Fink, Cell. Mol. Life Sci., 2001, 58, 1.
4. Long-range charge transfer in DNA, ed. G. B. Schuster, Springer, Berlin, 2004, vol. 236.
5. R. G. Endres, D. L. Cox and R. R. P. Singh, Rev. Mod. Phys., 2004, 76, 195.
6. (a) M. R. Arkin, E. D. A. Stemp, R. E. Holmlin, J. K. Barton, A. Hoermann, E. J. C. Olson and P. F. Barbara, Science, 1996, 273, 475;
7. (b) D. B. Hall, R. E. Holmlin and J. K. Barton, Nature, 1996, 382, 731.
8. (a) T. Fiebig, C. Wan, S. O. Kelley, J. K. Barton and A. H. Zewail, Proc. Natl. Acad. Sci. USA, 1999, 96, 1187;
9. (b) T. Fiebig, C. Wan, S. O. Kelley, J. K. Barton and A. H. Zewail, Proc. Natl. Acad. Sci. USA, 1999, 96, 6014;
10. (c) C. Wan, T. Fiebig, O. Schiemann, J. K. Barton and A. H. Zewail, Proc. Natl. Acad. Sci. USA, 2000, 97, 14052.
11. (a) E. Meggers, D. Kusch, M. Spichty, U. Wille and B. Giese, Angew. Chem., Int. Ed. Engl., 1998, 37, 459;
12. (b) E. Meggers, M. E. Michel-Beyerle and B. Giese, J. Am. Chem. Soc., 1998, 120, 12950.
13. (a) H. W. Fink and C. Schönenberger, Nature, 1999, 398, 407;
14. (b) D. Porath, A. Bezryadin, S. de Vries and C. Dekker, Nature, 2000, 403, 635.
15. M. E. Núñez, K. T. Noyes and J. K. Barton. Chem. Biol., 2002, 9, 403.
16. M. E. Núñez, G. P. Holmquist and J. K. Barton, Biochemistry, 2001, 40, 12465.
17. M. Bixon, B. Giese, S. Wessely, T. Langenbacher, M. E. Michel-Beyerle and J. Jortner, Proc. Natl. Acad. Sci. USA, 1999, 96, 11713.
18. (a) B. Giese, J. Amaudrut, A. K. Kohler, M. Spormann and S. Wessely, Nature, 2001, 412, 318;
19. (b) B. Giese and M. Spichty, ChemPhysChem, 2000, 1, 195.
20. A. A. Voityuk, K. Siriwong and N. Rösch, Angew. Chem., 2004, 116, 634.
21. (a) R. N. Barnett, C. L. Cleveland, A. Joy, U. Landman and G. B. Schuster, Science, 2001, 294, p. 567;
22. (b) G. B. Schuster and U. Landman in Long-range charge transfer in DNA, ed. G. B. Schuster, Springer, Berlin, 2004, vol. 236.
23. T. Cramer, S. Krapf, Th. Koslowski, submitted for publication.
24. K. Luger, A. W. Mäder, R. K. Richmond, D. F. Sargent and T. J. Richmond, Nature, 1997, 389, 251.
25. (a) R. V. Pappu, R. K. Hart and J. W. Ponder, J. Phys. Chem. B., 1998, 102, 9725;
26. (b) M. J. Dudek, K. Ramnarayan and J.W. Ponder, J. Comput. Chem., 1998, 19, 548;
27. (c) Y. Kong and J. W. Ponder, J. Chem. Phys., 1997, 107, 481;
28. (d) J. W. Ponder and F. M. Richards, J. Comput. Chem., 1987, 8, 1016.
29. (a) W. P. Su, J. R. Schrieffer and A. J. Heeger, Phys. Rev. Lett., 1979, 42, 1698;
30. (b) W. P. Su, J. R. Schrieffer and A. J. Heeger, Phys. Rev. B, 1980, 22, 2099.
31. (a) E. M. Conwell and S. V. Rakhmanova, Proc. Natl. Acad. Sci. USA, 2000, 97, 4556;
32. (b) S. V. Rakhmanova and E. M. Conwell, J. Phys. Chem. B, 2001, 105, 2056;
33. (c) E. Conwell, in Long-range charge transfer in DNA, ed. G. B. Schuster, Springer, Berlin, 2004. vol. 236.
34. (a) R. A. Marcus, J. Chem. Phys., 1956, 24, 966;
35. (b) R. A. Marcus, J. Chem. Phys., 1956, 24, 979;
36. (c) R. A. Marcus, Annu. Rev. Phys. Chem., 1964, 15, 155.
37. (a) R. Micnas, J. Ranninger and S. Robaskiewicz, Rev. Mod. Phys., 1990, 62, 113;
38. (b) A. Shun-Quing Shen, Int. J. Mod. Phys. B, 1998, 12, 709;
39. (c) F. Mancini, M. Marinaro and H. Matsumoto, Int. J. Mod. Phys. B, 1996, 10, 1717;
40. (d) A. Georges, G. Kotliar, W. Krauth and M. J. Rozenberg, Rev. Mod. Phys., 1996, 68, 13.
41. M. Rateitzak and Th. Koslowski, Chem. Phys. Lett., 2003, 377, 455.
42. A. Streitwieser, Molecular Orbital Theory for Organic Chemists, Wiley and Sons, New York 1961.
43. M. A. O'Neill and J. K. Barton, in Long-range charge transfer in DNA, ed. G. B. Schuster, Springer, Berlin, 2004, vol. 236.
44. D. C. Licciardello, D. L. Stein and F. D. M. Haldane, Phil. Mag. B., 1981, 43, 189.
45. Th. Koslowski, M. Koblischke and A. Blumen, Phys. Rev. B, 2002, 66, 64205.
46. T. Koslowski, A. Jurjiu and A. Blumen, J. Phys. Chem. B., 2004, 108, 3283.
47. N. Utz and Th. Koslowski, Chem. Phys., 2002, 282, 389.
48. (a) Th. Koslowski, J. Chem. Phys., 2000, 113, 10703;
49. (b) Th. Koslowski, Z. Phys. Chem. (Munich), 2001, 215, 1625;
50. (c) Th. Koslowski, Phys. Chem. Chem. Phys., 2003, 5, 2197.
51. I. V. Kurnikov, G. S. M. Tong, M. Madrid and D. N. Beratan, J. Phys. Chem. B., 2002, 106, 7.
52. J. Olofsson and S. Larsson, J. Phys. Chem. B., 2001, 105, 10398.
53. M. G. Debije, M. T. Milano and W. A. Bernhard, Angew. Chem., Int. Ed. Engl., 1999, 38, 2752.
54. (a) G. Rauhut and T. Clark. J. Am. Chem. Soc., 1993, 115, 9127;
55. (b) M. Gröppel, W. Roth and T. Clark, Adv. Mater., 1995, 7, 927.
56. F. D. Lewis, T. W. Xiaoyang, R. L. Letsinger, S. R. Grennfield, S. E. Miller and M. R. Wasielewski, J. Am. Chem. Soc., 2000, 122, 2889.
57. A. A. Voityuk, J. Jortner, M. Bixon and N. Rösch, Chem. Phys. Lett., 2000, 324, 430.
58. H. Sugiyama and I. Saito, J. Am. Chem. Soc., 1996, 118, 7063.
59. J. Plavec, P. Roselt, A. Földesi and J. Chattopadhyaya, Magn. Res. Chem., 1998, 36, 732.
60. A. A. Voityuk, K. Siriwong and N. Rösch, Phys. Chem. Chem. Phys., 2001, 3, 5421.
61. E. Schrödinger, What is life? The physical aspect of the living cell, Cambridge University Press, Cambridge, 1944, p. 65.