Pseudorotation of the sugar moiety in pyrimidine nucleosides occurs on the same time-scale as the overall tumbling: 2H NMR relaxation time study

Magnetic Resonance in Chemistry

Volumn 36, Issue 10, 1998, Pages 732-740

  Plavec, Janez ^a   Roselt, Peter ^b   Földesi, Andras ^b   Chattopadhyaya, Jyoti ^b  

^a NATIONAL INSTITUTE OF CHEMISTRY   (Slovenia)

^b UPPSALA UNIVERSITY   (Sweden)

Author keywords

13C NMR; 2H NMR; Conformation; Deuterated nucleoside; NMR; Pseudorotation; Relaxation

Indexed keywords

ACTIVATION ANALYSIS; ACTIVATION ENERGY; BIOMOLECULES; RELAXATION TIME;

13C NMR; 2H NMR; APPARENT ACTIVATION ENERGY; DEUTERATED NUCLEOSIDE; MOLECULAR REORIENTATION; PSEUDOROTATION; PYRIMIDINE NUCLEOSIDES; RELAXATION; SUGAR MOIETY; TEMPERATURE DEPENDENT;

DEUTERIUM;

EID: 0032347337     PISSN: 07491581     EISSN: None     Source Type: Journal    
DOI: 10.1002/(SICI)1097-458X(199810)36:10<732::AID-OMR369>3.0.CO;2-N     Document Type: Article

References (46)

1. W. Saenger, Principles of Nucleic Acid Structure. Springer, Berlin (1988).
2. C. Altona, and M. Sundaralingam, J. Am. Chem. Soc. 94, 8205 (1972); 95, 2333 (1973).
3. C. Altona, and M. Sundaralingam, J. Am. Chem. Soc. 94, 8205 (1972); 95, 2333 (1973).
4. (a) J. Feigon, A. H.-J. Wang, G. A. van der Marel, J. H. van Boom and A. Rich, Nucleic Acids Res. 12, 1243 (1984);
5. (b) S. Tran-Dinh, J. Taboury, J.-M. Neumann, T. Huynh-Dinh, B. Genissel, B. Laglois d'Estaintot and J. Igolen, Biochemistry 23, 1362 (1984);
6. (c) P. W. Davis, K. Hall, P. Cruz, I. Tinoco and T. Neilson, Nucleic Acids Res. 14, 1279 (1986);
7. (d) P. W. Davis, R. W. Adamiak and I. Tinoco, Biopolymers 29, 109 (1990);
8. (e) P. Agback, A. Sandstrom, S.-I. Yamakage, C. Sund, C. Glemarec and J. Chattopadhyaya, J. Biochem. Biophys. Methods 27, 229 (1993);
9. (f) P. Agback, C. Glemarec, L. Yin, A. Sandstrom, J. Plavec, C. Sund, S.-I. Yamakage, G. Wiswanadham, B. Rousse, N. Puri and J. Chattopadhyaya, Tetrahedron Lett. 34, 3929 (1993).
10. (a) J. Plavec, W. Tong and J. Chattopadhyaya, J. Am. Chem. Soc. 115, 9734 (1993);
11. (b) J. Plavec, N. Garg and J. Chattopadhyaya, J. Chem. Soc., Chem. Commun. 1011 (1993);
12. (c) J. Plavec, L. H. Koole and J. Chattopadhyaya, J. Biochem. Biophys. Methods 25, 253 (1992);
13. (d) L. H. Koole, H. M. Buck, A. Nyilas and J. Chattopadhyaya, Can J. Chem. 65, 2089 (1987);
14. (e) L. H. Koole, H. M. Buck, H. Bazin and J. Chattopadhyaya, Tetrahedron 43, 2289 (1987);
15. (f) L. H. Koole, J. Plavec, H. Liu, B. R. Vincent, M. R. Dyson, P. L. Coe, R. T. Walker, G. W. Hardy, S. G. Rahim and J. Chattopadhyaya, J. Am. Chem. Soc. 114, 9934 (1992);
16. (g) J. Plavec, C. Thibaudeau, G. Viswanadham, C. Sund and J. Chattopadyaya, J. Chem. Soc., Chem. Commun. 781 (1994);
17. (h) C. Thibaudeau, J. Plavec, K. A. Watanabe and J. Chattopadhyaya, J. Chem. Soc., Chem. Commun 537 (1994);
18. (i) C. Thibaudeau, J. Plavec, N. Garg, A. Papchikhin and J. Chattopadhyaya, J. Am. Chem. Soc. 116, 4038 (1994);
19. (j) J. Plavec, C. Thibaudeau and J. Chattopadhyaya, J. Am. Chem. Soc. 116, 6558 (1994);
20. (k) C. Thibaudeau, J. Plavec and J. Chattopadhyaya, J. Am. Chem. Soc. 116, 8033 (1994);
21. (l) J. Plavec, PhD Thesis, Uppsala University (1995);
22. (m) J. Plavec, C. Thibaudeau and J. Chattopadhyaya, Tetrahedron 51, 11775 (1995);
23. (n) C. Thibeaudeau, J. Plavec, and J. Chattopadhyaya, J. Org. Chem. 61 266 (1996);
24. (o) J. Chattopadhyaya, Nucleic Acids Symp. Ser. 35, 111 (1996);
25. (p) J. Plavec, C. Thibaudeau and J. Chattopadhyaya, Pure Appl. Chem. 68, 2137 (1996);
26. (r) I. Luyten, C. Thibaudeau and J. Chattopadhyaya, Tetrahedron 53, 6433 (1997);
27. (s) I. Luyten, C. Thibaudeau and J. Chattopadhyaya, Tetrahedron 53, 6903 (1997);
28. (t) I. Luyten, C. Thibaudeau and J. Chattopadhyaya, J. Org. Chem. 62, 8800 (1997);
29. (u) C. Thibaudeau, A. Földesi and J. Chattopadhyaya, Tetrehedron 53, 14043 (1997).
30. O. Röder, H.-D. Lüdermann and E. von. Goldammer, Eur, J. Biochem. 53, 517 (1975).
31. L. M. Rhodes and P. R. Schimmel, Biochemistry 10, 4426 (1971).
32. H.-D. Lüdemann, O. Roder, E. Westhof, E. v. Goldammer and A. Muller, Biophys. Struct. Mech. 1, 121 (1975).
33. H.-D. Lüdeman and E. Westhof, in Nuclear Magnetic Resonance in Molecular Biology edited by B. Pullman, p. 41. Reidel, Dordrecht (1978).
34. J. Sandström, Dynamic NMR Spectroscopy. Academic Press, London (1982).
35. H. H. Mantsch, H. Saito and I. C. P. Smith, Prog. Nucl. Magn. Reson. Spectrosc. 11, 211 (1977).
36. R. G. Kidd, in NMR of Newly Accessible Nuclei, edited by P. Laszlo, Vol. 1, p. 103. Academic Press, New York (1983).
37. H. C. Jarrell, I. C. P. Smith, in Applications of High Resolution Deuterium Magnetic Resonance, NATO ASI Series C103, edited by J. B. Lambert and F. G. Riddell, p. 133. Reidel, Dordrecht (1983).
38. S. Schramm and E. Oldfield, Biochemistry 22, 2908 (1983).
39. I. C. P. Smith, and H H. Mantsch, ACS Symp. Ser. 191, 97 (1982).
40. W. Egan, J. Am. Chem. Soc. 98, 4091 (1976).
41. A. P. Zens, P. T. Fogle, T. A. Bryson, R. B. Dunlap, R. R. Fisher and P. D. Ellis, J. Am. Chem. Soc. 98, 3760 (1976).
42. A. P. Zens, T. A. Bryson, R. B. Dunlap, R. R. Fisher and P. D. Ellis, J. Am. Chem. Soc. 98, 7559 (1976).
43. C. Brevard, J. P. Kintzinger and J. M. Lehn, J. Chem. Soc., Chem. Commun. 1193 (1969).
44. H. Saito, H. H. Mantsch and I. C. P. Smith, J. Am. Chem. Soc. 95, 8453 (1973).
45. H.-D. Lüdemann and O. Röder, J. Am. Chem. Soc. 97, 4402 (1975).
46. M. Polak, B. Mohar, J. Kobe and J. Plavec, J. Am. Chem. Soc. 120, 2508 (1998).