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Volumn 31, Issue 3, 2003, Pages 869-877

Binding of L7Ae protein to the K-turn of archaeal snoRNAs: A shared RNA binding motif for C/D and H/ACA box snoRNAs in Archaea

Author keywords

[No Author keywords available]

Indexed keywords

CORE PROTEIN; PROTEIN L7AE; RIBOSOME PROTEIN; SMALL NUCLEAR RIBONUCLEOPROTEIN; SMALL NUCLEOLAR RNA; TRANSFER RNA; UNCLASSIFIED DRUG;

EID: 0037324527     PISSN: 03051048     EISSN: None     Source Type: Journal    
DOI: 10.1093/nar/gkg175     Document Type: Review
Times cited : (190)

References (41)
  • 1
    • 0030604698 scopus 로고    scopus 로고
    • Site-specific ribose methylation of preribosomal RNA: A novel function for small nucleolar RNAs
    • Kiss-Laszlo,Z., Henry,Y., Bachellerie,J.P., Caizergues-Ferrer,M. and Kiss,T. (1996) Site-specific ribose methylation of preribosomal RNA: a novel function for small nucleolar RNAs. Cell, 85, 1077-1088.
    • (1996) Cell , vol.85 , pp. 1077-1088
    • Kiss-Laszlo, Z.1    Henry, Y.2    Bachellerie, J.P.3    Caizergues-Ferrer, M.4    Kiss, T.5
  • 2
    • 0030711050 scopus 로고    scopus 로고
    • Site-specific pseudouridine formation in preribosomal RNA is guided by small nucleolar RNAs
    • Ganot,P., Bortolin,M.L. and Kiss,T. (1997) Site-specific pseudouridine formation in preribosomal RNA is guided by small nucleolar RNAs. Cell, 89, 799-809.
    • (1997) Cell , vol.89 , pp. 799-809
    • Ganot, P.1    Bortolin, M.L.2    Kiss, T.3
  • 4
    • 0037117533 scopus 로고    scopus 로고
    • In vitro reconstitution and activity of a C/D box methylation guide ribonucleoprotein complex
    • Omer,A.D., Ziesche,S., Ebhardt,H. and Dennis,P.P. (2002) In vitro reconstitution and activity of a C/D box methylation guide ribonucleoprotein complex. Proc. Natl Acad. Sci. USA, 99, 5289-5294.
    • (2002) Proc. Natl. Acad. Sci. USA , vol.99 , pp. 5289-5294
    • Omer, A.D.1    Ziesche, S.2    Ebhardt, H.3    Dennis, P.P.4
  • 5
    • 0036591884 scopus 로고    scopus 로고
    • Biogenesis of small nucleolar ribonucleoproteins
    • Filipowicz,W. and Pogacic,V. (2002) Biogenesis of small nucleolar ribonucleoproteins. Curr. Opin. Cell. Biol., 14, 319-327.
    • (2002) Curr. Opin. Cell. Biol. , vol.14 , pp. 319-327
    • Filipowicz, W.1    Pogacic, V.2
  • 6
    • 0031758488 scopus 로고    scopus 로고
    • Birth of the snoRNPs: The evolution of the modification-guide snoRNAs
    • Lafontaine,D.L. and Tollervey,D. (1998) Birth of the snoRNPs: the evolution of the modification-guide snoRNAs. Trends Biochem. Sci., 23, 383-388.
    • (1998) Trends Biochem. Sci. , vol.23 , pp. 383-388
    • Lafontaine, D.L.1    Tollervey, D.2
  • 7
    • 0033153297 scopus 로고    scopus 로고
    • Guided tours: From precursor snoRNA to functional snoRNP
    • Weinstein,L.B. and Steitz,J.A. (1999) Guided tours: from precursor snoRNA to functional snoRNP. Curr. Opin. Cell. Biol., 11, 378-384.
    • (1999) Curr. Opin. Cell. Biol. , vol.11 , pp. 378-384
    • Weinstein, L.B.1    Steitz, J.A.2
  • 8
    • 0030581160 scopus 로고    scopus 로고
    • Intron-encoded, antisense small nucleolar RNAs: The characterization of nine novel species points to their direct role as guides for the 2′-O-ribose methylation of rRNAs
    • Nicoloso,M., Qu,L.H., Michot,B. and Bachellerie,J.P. (1996) Intron-encoded, antisense small nucleolar RNAs: the characterization of nine novel species points to their direct role as guides for the 2′-O-ribose methylation of rRNAs. J. Mol. Biol., 260, 178-195.
    • (1996) J. Mol. Biol. , vol.260 , pp. 178-195
    • Nicoloso, M.1    Qu, L.H.2    Michot, B.3    Bachellerie, J.P.4
  • 9
    • 0029808113 scopus 로고    scopus 로고
    • Targeted ribose methylation of RNA in vivo directed by tailored antisense RNA guides
    • Cavaille,J., Nicoloso,M. and Bachellerie,J.P. (1996) Targeted ribose methylation of RNA in vivo directed by tailored antisense RNA guides. Nature, 383, 732-735.
    • (1996) Nature , vol.383 , pp. 732-735
    • Cavaille, J.1    Nicoloso, M.2    Bachellerie, J.P.3
  • 11
    • 0034509631 scopus 로고    scopus 로고
    • Crystal structure of the spliceosomal 15.5 kD protein bound to a U4 snRNA fragment
    • Vidovic,I., Nottrott,S., Hartmuth,K., Luhrmann,R. and Ficner,R. (2000) Crystal structure of the spliceosomal 15.5 kD protein bound to a U4 snRNA fragment. Mol. Cell, 6, 1331-1342.
    • (2000) Mol. Cell , vol.6 , pp. 1331-1342
    • Vidovic, I.1    Nottrott, S.2    Hartmuth, K.3    Luhrmann, R.4    Ficner, R.5
  • 12
    • 0035423087 scopus 로고    scopus 로고
    • The kink-turn: A new RNA secondary structure motif
    • Klein,D.J., Schmeing,T.M., Moore,P.B. and Steitz,T.A. (2001) The kink-turn: a new RNA secondary structure motif. EMBO J., 20, 4214-4221.
    • (2001) EMBO J. , vol.20 , pp. 4214-4221
    • Klein, D.J.1    Schmeing, T.M.2    Moore, P.B.3    Steitz, T.A.4
  • 13
    • 0034897731 scopus 로고    scopus 로고
    • The GA motif: An RNA element common to bacterial antitermination systems, rRNA and eukaryotic RNAs
    • Winkler,W.C., Grundy,F.J., Murphy,B.A. and Henkin,T.M. (2001) The GA motif: an RNA element common to bacterial antitermination systems, rRNA and eukaryotic RNAs. RNA, 7, 1165-1172.
    • (2001) RNA , vol.7 , pp. 1165-1172
    • Winkler, W.C.1    Grundy, F.J.2    Murphy, B.A.3    Henkin, T.M.4
  • 14
    • 0034081813 scopus 로고    scopus 로고
    • Box C/D snoRNA-associated proteins: Two pairs of evolutionarily ancient proteins and possible links to replication and transcription
    • Newman,D.R., Kuhn,J.F., Shanab,G.M. and Maxwell,E.S. (2000) Box C/D snoRNA-associated proteins: two pairs of evolutionarily ancient proteins and possible links to replication and transcription. RNA, 6, 861-879.
    • (2000) RNA , vol.6 , pp. 861-879
    • Newman, D.R.1    Kuhn, J.F.2    Shanab, G.M.3    Maxwell, E.S.4
  • 15
    • 0027536869 scopus 로고
    • Temperature-sensitive mutations demonstrate roles for yeast fibrillarin in pre-rRNA processing, pre-rRNA methylation and ribosome assembly
    • Tollervey,D., Lehtonen,H., Jansen,R., Kern,H. and Hurt,E.C. (1993) Temperature-sensitive mutations demonstrate roles for yeast fibrillarin in pre-rRNA processing, pre-rRNA methylation and ribosome assembly. Cell, 72, 443-457.
    • (1993) Cell , vol.72 , pp. 443-457
    • Tollervey, D.1    Lehtonen, H.2    Jansen, R.3    Kern, H.4    Hurt, E.C.5
  • 16
    • 0033534476 scopus 로고    scopus 로고
    • S-Adenosylmethionine-dependent methylation in Saccharomyces cerevisiae. Identification of a novel protein arginine methyltransferase
    • Niewmierzycka,A. and Clarke,S. (1999) S-Adenosylmethionine-dependent methylation in Saccharomyces cerevisiae. Identification of a novel protein arginine methyltransferase. J. Biol. Chem., 274, 814-824.
    • (1999) J. Biol. Chem. , vol.274 , pp. 814-824
    • Niewmierzycka, A.1    Clarke, S.2
  • 17
    • 0034141555 scopus 로고    scopus 로고
    • Crystal structure of a fibrillarin homologue from Methanococcus jannaschii, a hyperthermophile, at 1.6 Å resolution
    • Wang,H., Boisvert,D., Kim,K.K., Kim,R. and Kim,S.H. (2000) Crystal structure of a fibrillarin homologue from Methanococcus jannaschii, a hyperthermophile, at 1.6 Å resolution. EMBO J., 19, 317-323.
    • (2000) EMBO J. , vol.19 , pp. 317-323
    • Wang, H.1    Boisvert, D.2    Kim, K.K.3    Kim, R.4    Kim, S.H.5
  • 18
    • 0036786431 scopus 로고    scopus 로고
    • Purified box C/D snoRNPs are able to reproduce site-specific 2′-O-methylation of target RNA in vitro
    • Galardi,S., Fatica,A., Bachi,A., Scaloni,A., Presutti,C. and Bozzoni,I. (2002) Purified box C/D snoRNPs are able to reproduce site-specific 2′-O-methylation of target RNA in vitro. Mol. Cell. Biol., 22, 6663-6668.
    • (2002) Mol. Cell. Biol. , vol.22 , pp. 6663-6668
    • Galardi, S.1    Fatica, A.2    Bachi, A.3    Scaloni, A.4    Presutti, C.5    Bozzoni, I.6
  • 19
    • 0033229873 scopus 로고    scopus 로고
    • Functional interaction of a novel 15.5kD [U4/U6.U5] tri-snRNP protein with the 5′ stem-loop of U4 snRNA
    • Nottrott,S., Hartmuth,K., Fabrizio,P., Urlaub,H., Vidovic,I., Ficner,R. and Luhrmann,R. (1999) Functional interaction of a novel 15.5kD [U4/U6.U5] tri-snRNP protein with the 5′ stem-loop of U4 snRNA. EMBO J., 18, 6119-6133.
    • (1999) EMBO J. , vol.18 , pp. 6119-6133
    • Nottrott, S.1    Hartmuth, K.2    Fabrizio, P.3    Urlaub, H.4    Vidovic, I.5    Ficner, R.6    Luhrmann, R.7
  • 20
    • 0032710024 scopus 로고    scopus 로고
    • A novel loop-loop recognition motif in the yeast ribosomal protein L30 autoregulatory RNA complex
    • Mao,H., White,S.A. and Williamson,J.R. (1999) A novel loop-loop recognition motif in the yeast ribosomal protein L30 autoregulatory RNA complex. Nature Struct. Biol., 6, 1139-1147.
    • (1999) Nature Struct. Biol. , vol.6 , pp. 1139-1147
    • Mao, H.1    White, S.A.2    Williamson, J.R.3
  • 21
    • 0037082424 scopus 로고    scopus 로고
    • Archaeal ribosomal protein L7 is a functional homolog of the eukaryotic 15.5kD/Snu13p snoRNP core protein
    • Kuhn,J.F., Tran,E.J. and Maxwell,E.S. (2002) Archaeal ribosomal protein L7 is a functional homolog of the eukaryotic 15.5kD/Snu13p snoRNP core protein. Nucleic Acids Res., 30, 931-941.
    • (2002) Nucleic Acids Res. , vol.30 , pp. 931-941
    • Kuhn, J.F.1    Tran, E.J.2    Maxwell, E.S.3
  • 22
    • 0030572699 scopus 로고    scopus 로고
    • The RNA world of the nucleolus: Two major families of small RNAs defined by different box elements with related functions
    • Balakin,A.G., Smith,L. and Fournier,M.J. (1996) The RNA world of the nucleolus: two major families of small RNAs defined by different box elements with related functions. Cell, 86, 823-834.
    • (1996) Cell , vol.86 , pp. 823-834
    • Balakin, A.G.1    Smith, L.2    Fournier, M.J.3
  • 23
    • 0031003901 scopus 로고    scopus 로고
    • The family of box ACA small nucleolar RNAs is defined by an evolutionarily conserved secondary structure and ubiquitous sequence elements essential for RNA accumulation
    • Ganot,P., Caizergues-Ferrer,M. and Kiss,T. (1997) The family of box ACA small nucleolar RNAs is defined by an evolutionarily conserved secondary structure and ubiquitous sequence elements essential for RNA accumulation. Genes Dev., 11, 941-956.
    • (1997) Genes Dev. , vol.11 , pp. 941-956
    • Ganot, P.1    Caizergues-Ferrer, M.2    Kiss, T.3
  • 24
    • 0037029086 scopus 로고    scopus 로고
    • Ribosomal RNA pseudouridines and pseudouridine synthases
    • Ofengand,J. (2002) Ribosomal RNA pseudouridines and pseudouridine synthases. FEBS Lett., 514, 17-25.
    • (2002) FEBS Lett. , vol.514 , pp. 17-25
    • Ofengand, J.1
  • 26
    • 0031788801 scopus 로고    scopus 로고
    • Cbf5p, a potential pseudouridine synthase and Nhp2p, a putative RNA-binding protein, are present together with Gar1p in all H BOX/ACA-motif snoRNPs and constitute a common bipartite structure
    • Watkins,N.J., Gottschalk,A., Neubauer,G., Kastner,B., Fabrizio,P., Mann,M. and Luhrmann,R. (1998) Cbf5p, a potential pseudouridine synthase and Nhp2p, a putative RNA-binding protein, are present together with Gar1p in all H BOX/ACA-motif snoRNPs and constitute a common bipartite structure. RNA, 4, 1549-1568.
    • (1998) RNA , vol.4 , pp. 1549-1568
    • Watkins, N.J.1    Gottschalk, A.2    Neubauer, G.3    Kastner, B.4    Fabrizio, P.5    Mann, M.6    Luhrmann, R.7
  • 27
    • 0034459569 scopus 로고    scopus 로고
    • Human H/ACA small nucleolar RNPs and telomerase share evolutionarily conserved proteins NHP2 and NOP10
    • Pogacic,V., Dragon,F. and Filipowicz,W. (2000) Human H/ACA small nucleolar RNPs and telomerase share evolutionarily conserved proteins NHP2 and NOP10. Mol. Cell. Biol., 20, 9028-9040.
    • (2000) Mol. Cell. Biol. , vol.20 , pp. 9028-9040
    • Pogacic, V.1    Dragon, F.2    Filipowicz, W.3
  • 28
    • 0035955716 scopus 로고    scopus 로고
    • Identification of the first trypanosome H/ACA RNA that guides pseudouridine formation on rRNA
    • Liang,X.H., Liu,L. and Michaeli,S. (2001) Identification of the first trypanosome H/ACA RNA that guides pseudouridine formation on rRNA. J. Biol. Chem., 276, 40313-40318.
    • (2001) J. Biol. Chem. , vol.276 , pp. 40313-40318
    • Liang, X.H.1    Liu, L.2    Michaeli, S.3
  • 29
    • 0034659940 scopus 로고    scopus 로고
    • Evolutionary appearance of genes encoding proteins associated with box H/ACA snoRNAs: cbf5p in Euglena gracilis, an early diverging eukaryote and candidate Gar1p and Nop10p homologs in archaebacteria
    • Watanabe,Y. and Gray,M.W. (2000) Evolutionary appearance of genes encoding proteins associated with box H/ACA snoRNAs: cbf5p in Euglena gracilis, an early diverging eukaryote and candidate Gar1p and Nop10p homologs in archaebacteria. Nucleic Acids Res., 28, 2342-2352.
    • (2000) Nucleic Acids Res. , vol.28 , pp. 2342-2352
    • Watanabe, Y.1    Gray, M.W.2
  • 30
    • 0023651444 scopus 로고
    • Oligoribonucleotide synthesis using T7 RNA polymerase and synthetic DNA templates
    • Milligan,J.F., Groebe,D.R., Witherell,G.W. and Uhlenbeck,O.C. (1987) Oligoribonucleotide synthesis using T7 RNA polymerase and synthetic DNA templates. Nucleic Acids Res., 15, 8783-8798.
    • (1987) Nucleic Acids Res. , vol.15 , pp. 8783-8798
    • Milligan, J.F.1    Groebe, D.R.2    Witherell, G.W.3    Uhlenbeck, O.C.4
  • 31
    • 0023461268 scopus 로고
    • Specific synthesis of DNA in vitro via a polymerase-catalyzed chain reaction
    • Mullis,K.B. and Faloona,F.A. (1987) Specific synthesis of DNA in vitro via a polymerase-catalyzed chain reaction. Methods Enzymol., 155, 335-350.
    • (1987) Methods Enzymol. , vol.155 , pp. 335-350
    • Mullis, K.B.1    Faloona, F.A.2
  • 32
    • 0024241761 scopus 로고
    • Structural analysis of RNA using chemical and enzymatic probing monitored by primer extension
    • Stern,S., Moazed,D. and Noller,H.F. (1988) Structural analysis of RNA using chemical and enzymatic probing monitored by primer extension. Methods Enzymol., 164, 481-489.
    • (1988) Methods Enzymol. , vol.164 , pp. 481-489
    • Stern, S.1    Moazed, D.2    Noller, H.F.3
  • 34
    • 0034070995 scopus 로고    scopus 로고
    • Calculating nucleic acid secondary structure
    • Zuker,M. (2000) Calculating nucleic acid secondary structure. Curr. Opin. Struct. Biol., 10, 303-310.
    • (2000) Curr. Opin. Struct. Biol. , vol.10 , pp. 303-310
    • Zuker, M.1
  • 35
    • 0021889172 scopus 로고
    • Secondary structure analysis of apolipoprotein II mRNA using enzymatic probes and reverse transcriptase. Evaluation of primer extension for high resolution structure mapping of mRNA
    • Shelness,G.S. and Williams,D.L. (1985) Secondary structure analysis of apolipoprotein II mRNA using enzymatic probes and reverse transcriptase. Evaluation of primer extension for high resolution structure mapping of mRNA. J. Biol. Chem., 260, 8637-8646.
    • (1985) J. Biol. Chem. , vol.260 , pp. 8637-8646
    • Shelness, G.S.1    Williams, D.L.2
  • 36
    • 0036794074 scopus 로고    scopus 로고
    • The SBP2 and 15.5/Snu13p proteins share the same RNA binding domain: Identification of SBP2 amino acids important to SECIS RNA binding
    • Allmang,C., Carbon,P. and Krol,A. (2002) The SBP2 and 15.5/Snu13p proteins share the same RNA binding domain: identification of SBP2 amino acids important to SECIS RNA binding. RNA, 8, 1308-1318.
    • (2002) RNA , vol.8 , pp. 1308-1318
    • Allmang, C.1    Carbon, P.2    Krol, A.3
  • 37
    • 0037188546 scopus 로고    scopus 로고
    • Noncoding RNA genes identified in AT-rich hyperthermophiles
    • Klein,R.J., Misulovin,Z. and Eddy,S.R. (2002) Noncoding RNA genes identified in AT-rich hyperthermophiles. Proc. Natl Acad. Sci. USA, 99, 7542-7547.
    • (2002) Proc. Natl. Acad. Sci. USA , vol.99 , pp. 7542-7547
    • Klein, R.J.1    Misulovin, Z.2    Eddy, S.R.3
  • 38
    • 0031581856 scopus 로고    scopus 로고
    • Mapping to nucleotide resolution of pseudouridine residues in large subunit ribosomal RNAs from representative eukaryotes, prokaryotes, archaebacteria, mitochondria and chloroplasts
    • Ofengand,J. and Bakin,A. (1997) Mapping to nucleotide resolution of pseudouridine residues in large subunit ribosomal RNAs from representative eukaryotes, prokaryotes, archaebacteria, mitochondria and chloroplasts. J. Mol. Biol., 266, 246-268.
    • (1997) J. Mol. Biol. , vol.266 , pp. 246-268
    • Ofengand, J.1    Bakin, A.2
  • 39
    • 0036218355 scopus 로고    scopus 로고
    • The spliced leader-associated RNA is a trypanosome-specific sn(o) RNA that has the potential to guide pseudouridine formation on the SL RNA
    • Liang,X.H., Xu,Y.X. and Michaeli,S. (2002) The spliced leader-associated RNA is a trypanosome-specific sn(o) RNA that has the potential to guide pseudouridine formation on the SL RNA. RNA, 8, 237-246.
    • (2002) RNA , vol.8 , pp. 237-246
    • Liang, X.H.1    Xu, Y.X.2    Michaeli, S.3
  • 41
    • 0035355205 scopus 로고    scopus 로고
    • RNomics: An experimental approach that identifies 201 candidates for novel, small, non-messenger RNAs in mouse
    • Huttenhofer,A., Kiefmann,M., Meier-Ewert,S., O'Brien,J., Lehrach,H., Bachellerie,J.P. and Brosius,J. (2001) RNomics: an experimental approach that identifies 201 candidates for novel, small, non-messenger RNAs in mouse. EMBO J., 20, 2943-2953.
    • (2001) EMBO J. , vol.20 , pp. 2943-2953
    • Huttenhofer, A.1    Kiefmann, M.2    Meier-Ewert, S.3    O'Brien, J.4    Lehrach, H.5    Bachellerie, J.P.6    Brosius, J.7


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