메뉴 건너뛰기




Volumn 12, Issue 8, 2005, Pages 683-690

A 'loop recapture' mechanism for ACF-dependent nucleosome remodeling

Author keywords

[No Author keywords available]

Indexed keywords

ATP DEPENDENT CHROMATIN ASSEMBLY AND REMODELLING FACTOR; DOUBLE STRANDED DNA; ETHIDIUM BROMIDE; HISTONE; IMITATION SWI PROTEIN; PROTEIN; UNCLASSIFIED DRUG; ACF1 PROTEIN, DROSOPHILA; ADENOSINE TRIPHOSPHATASE; DNA; DROSOPHILA PROTEIN; ETHIDIUM; TRANSCRIPTION FACTOR;

EID: 26944433102     PISSN: 15459993     EISSN: 15459985     Source Type: Journal    
DOI: 10.1038/nsmb966     Document Type: Article
Times cited : (84)

References (45)
  • 1
    • 0035997356 scopus 로고    scopus 로고
    • ATP-dependent nucleosome remodeling
    • Becker, P.B. & Hörz, W. ATP-dependent nucleosome remodeling. Annu. Rev. Biochem. 71, 247-273 (2002).
    • (2002) Annu. Rev. Biochem. , vol.71 , pp. 247-273
    • Becker, P.B.1    Hörz, W.2
  • 2
    • 1542328273 scopus 로고    scopus 로고
    • Nucleosome remodeling: One mechanism, many phenomena?
    • Längst, G. & Becker, P.B. Nucleosome remodeling: one mechanism, many phenomena? Biochim. Biophys. Acta 1677, 58-63 (2004).
    • (2004) Biochim. Biophys. Acta , vol.1677 , pp. 58-63
    • Längst, G.1    Becker, P.B.2
  • 3
    • 0035704707 scopus 로고    scopus 로고
    • Role of DNA sequence in nucleosome stability and dynamics
    • Widom, J. Role of DNA sequence in nucleosome stability and dynamics. Q. Rev. Biophys. 34, 269-324 (2001).
    • (2001) Q. Rev. Biophys. , vol.34 , pp. 269-324
    • Widom, J.1
  • 6
    • 0031831516 scopus 로고    scopus 로고
    • Structure, dynamics, and function of chromatin in vitro
    • Widom, J. Structure, dynamics, and function of chromatin in vitro. Annu. Rev. Biophys. Biomol. Struct. 27, 285-327 (1998).
    • (1998) Annu. Rev. Biophys. Biomol. Struct. , vol.27 , pp. 285-327
    • Widom, J.1
  • 7
    • 0028125847 scopus 로고
    • A histone octamer can step around a transcribing polymerase without leaving the template
    • Studitsky, V.M., Clark, D.J. & Felsenfeld, G. A histone octamer can step around a transcribing polymerase without leaving the template. Cell 76, 371-382 (1994).
    • (1994) Cell , vol.76 , pp. 371-382
    • Studitsky, V.M.1    Clark, D.J.2    Felsenfeld, G.3
  • 9
    • 0037133348 scopus 로고    scopus 로고
    • Mechanical disruption of individual nucleosomes reveals a reversible multistage release of DNA
    • Brower-Toland, B.D. et al. Mechanical disruption of individual nucleosomes reveals a reversible multistage release of DNA. Proc. Natl. Acad. Sci. USA 99, 1960-1965 (2002).
    • (2002) Proc. Natl. Acad. Sci. USA , vol.99 , pp. 1960-1965
    • Brower-Toland, B.D.1
  • 10
    • 0036307707 scopus 로고    scopus 로고
    • Solvent mediated interactions in the structure of the nucleosome core particle at 1.9 a resolution
    • Davey, C.A., Sargent, D.F., Luger, K., Maeder, A.W. & Richmond, T.J. Solvent mediated interactions in the structure of the nucleosome core particle at 1.9 a resolution. J. Mol. Biol. 319, 1097-1113 (2002).
    • (2002) J. Mol. Biol. , vol.319 , pp. 1097-1113
    • Davey, C.A.1    Sargent, D.F.2    Luger, K.3    Maeder, A.W.4    Richmond, T.J.5
  • 11
    • 0029618369 scopus 로고
    • ISWI, a member of the SWI2/SNF2 ATPase family, encodes the 140 kDa subunit of the nucleosome remodel ing factor
    • Tsukiyama, T., Daniel, C., Tamkun, J. & Wu, C. ISWI, a member of the SWI2/SNF2 ATPase family, encodes the 140 kDa subunit of the nucleosome remodel ing factor. Cell 83, 1021-1026 (1995).
    • (1995) Cell , vol.83 , pp. 1021-1026
    • Tsukiyama, T.1    Daniel, C.2    Tamkun, J.3    Wu, C.4
  • 12
    • 0031444148 scopus 로고    scopus 로고
    • ACF, an ISWI-containing and ATP-utilizing chromatin assembly and remodeling factor
    • Ito, T., Bulger, M., Pazin, M.J., Kobayashi, R. & Kadonaga, J.T. ACF, an ISWI-containing and ATP-utilizing chromatin assembly and remodeling factor. Cell 90, 145-155 (1997).
    • (1997) Cell , vol.90 , pp. 145-155
    • Ito, T.1    Bulger, M.2    Pazin, M.J.3    Kobayashi, R.4    Kadonaga, J.T.5
  • 13
    • 0030839857 scopus 로고    scopus 로고
    • Chromatin-remodelling factor CHRAC contains the ATPases ISWI and topoisomerase II
    • Varga-Weisz, P. et al. Chromatin-remodelling factor CHRAC contains the ATPases ISWI and topoisomerase II. Nature 388, 598-602 (1997).
    • (1997) Nature , vol.388 , pp. 598-602
    • Varga-Weisz, P.1
  • 14
    • 0033564199 scopus 로고    scopus 로고
    • ACF consists of two subunits, Acf1 and ISWI, that function cooperatively in the ATP-dependent catalysis of chromatin assembly
    • Ito, T. et al. ACF consists of two subunits, Acf1 and ISWI, that function cooperatively in the ATP-dependent catalysis of chromatin assembly. Genes Dev. 13, 1529-1539 (1999).
    • (1999) Genes Dev. , vol.13 , pp. 1529-1539
    • Ito, T.1
  • 15
    • 0034704235 scopus 로고    scopus 로고
    • Generation of superhelical torsion by ATP-dependent chromatin remodel ing activities
    • Havas, K. et al. Generation of superhelical torsion by ATP-dependent chromatin remodel ing activities. Cell 103, 1133-1142 (2000).
    • (2000) Cell , vol.103 , pp. 1133-1142
    • Havas, K.1
  • 16
    • 0036837861 scopus 로고    scopus 로고
    • hSWI/SNF-catalyzed nucleosome sliding does not occur solely via a twist-diffusion mechanism
    • Aoyagi, S. & Hayes, J.J. hSWI/SNF-catalyzed nucleosome sliding does not occur solely via a twist-diffusion mechanism. Mol. Cell. Biol. 22, 7484-7490 (2002).
    • (2002) Mol. Cell. Biol. , vol.22 , pp. 7484-7490
    • Aoyagi, S.1    Hayes, J.J.2
  • 17
    • 4544266390 scopus 로고    scopus 로고
    • Spatial contacts and nucleosome step movements induced by the NURF chromatin remodeling complex
    • Schwanbeck, R., Xiao, H. & Wu, C. Spatial contacts and nucleosome step movements induced by the NURF chromatin remodeling complex. J. Biol. Chem. 279, 39933-39941 (2004).
    • (2004) J. Biol. Chem. , vol.279 , pp. 39933-39941
    • Schwanbeck, R.1    Xiao, H.2    Wu, C.3
  • 18
    • 0035930334 scopus 로고    scopus 로고
    • ISWI induces nucleosome sliding on nicked DNA
    • Längst, G. & Becker, P.B. ISWI induces nucleosome sliding on nicked DNA. Mol. Cell 8, 1085-1092 (2001).
    • (2001) Mol. Cell , vol.8 , pp. 1085-1092
    • Längst, G.1    Becker, P.B.2
  • 19
    • 0033603212 scopus 로고    scopus 로고
    • Nucleosome movement by CHRAC and ISWI without disruption or trans-displacement of the histone octamer
    • Längst, G., Bonte, E.J., Corona, D.F. & Becker, P.B. Nucleosome movement by CHRAC and ISWI without disruption or trans-displacement of the histone octamer. Cell 97, 843-852 (1999).
    • (1999) Cell , vol.97 , pp. 843-852
    • Längst, G.1    Bonte, E.J.2    Corona, D.F.3    Becker, P.B.4
  • 20
    • 0035898615 scopus 로고    scopus 로고
    • Acf1, the largest subunit of CHRAC, regulates ISWI-induced nucleosome remodelling
    • Eberharter, A. et al. Acf1, the largest subunit of CHRAC, regulates ISWI-induced nucleosome remodelling. EMBO J. 20, 3781-3788 (2001).
    • (2001) EMBO J. , vol.20 , pp. 3781-3788
    • Eberharter, A.1
  • 22
    • 0040182980 scopus 로고    scopus 로고
    • Simultaneous binding of two DNA duplexes to the NtrC-enhancer complex studied by two-color fluorescence cross-correlation spectroscopy
    • Rippe, K. Simultaneous binding of two DNA duplexes to the NtrC-enhancer complex studied by two-color fluorescence cross-correlation spectroscopy. Biochemistry 39, 2131-2139 (2000).
    • (2000) Biochemistry , vol.39 , pp. 2131-2139
    • Rippe, K.1
  • 23
    • 0036106455 scopus 로고    scopus 로고
    • Analysis of ligand binding by two-colour fluorescence cross-correlation spectroscopy
    • Weidemann, T., Wachsmuth, M., Tewes, M., Rippe, K. & Langowski, J. Analysis of ligand binding by two-colour fluorescence cross-correlation spectroscopy. Single Molecules 3, 49-61 (2002).
    • (2002) Single Molecules , vol.3 , pp. 49-61
    • Weidemann, T.1    Wachsmuth, M.2    Tewes, M.3    Rippe, K.4    Langowski, J.5
  • 24
    • 0030895059 scopus 로고    scopus 로고
    • Dual-color fluorescence cross-correlation spectroscopy for multicomponent diffusional analysis in solution
    • Schwille, P., Meyer-Almes, F.J. & Rigler, R. Dual-color fluorescence cross-correlation spectroscopy for multicomponent diffusional analysis in solution. Biophys. J. 72, 1878-1886 (1997).
    • (1997) Biophys. J. , vol.72 , pp. 1878-1886
    • Schwille, P.1    Meyer-Almes, F.J.2    Rigler, R.3
  • 25
    • 0032557498 scopus 로고    scopus 로고
    • Association states of the transcription activator protein NtrC from E. coli determined by analytical ultracentrifugation
    • Rippe, K., Mucke, N. & Schulz, A. Association states of the transcription activator protein NtrC from E. coli determined by analytical ultracentrifugation. J. Mol. Biol. 278, 915-933 (1998).
    • (1998) J. Mol. Biol. , vol.278 , pp. 915-933
    • Rippe, K.1    Mucke, N.2    Schulz, A.3
  • 26
    • 0004352648 scopus 로고
    • Binding of ethidium bromide causes dissociation of the nucleosome core particle
    • McMurray, C.T. & van Holde, K.E. Binding of ethidium bromide causes dissociation of the nucleosome core particle. Proc. Natl. Acad. Sci. USA 83, 8472-8476 (1986).
    • (1986) Proc. Natl. Acad. Sci. USA , vol.83 , pp. 8472-8476
    • McMurray, C.T.1    Van Holde, K.E.2
  • 27
    • 0025779527 scopus 로고
    • Binding of ethidium to the nucleosome core particle. 1. Binding and dissociation reactions
    • McMurray, C.T. & van Holde, K.E. Binding of ethidium to the nucleosome core particle. 1. Binding and dissociation reactions. Biochemistry 30, 5631-5643 (1991).
    • (1991) Biochemistry , vol.30 , pp. 5631-5643
    • McMurray, C.T.1    Van Holde, K.E.2
  • 28
    • 0017250384 scopus 로고
    • Studies on the mechanism of DNA cleavage by ethidium
    • Deniss, I.S. & Morgan, A.R. Studies on the mechanism of DNA cleavage by ethidium. Nucleic Acids Res. 3, 315-323 (1976).
    • (1976) Nucleic Acids Res. , vol.3 , pp. 315-323
    • Deniss, I.S.1    Morgan, A.R.2
  • 29
    • 0025141798 scopus 로고
    • A photochemical method to map ethidium bromide binding sites on DNA: Application to a bent DNA fragment
    • Krishnamurthy, G., Polte, T., Rooney, T. & Hogan, M.E. A photochemical method to map ethidium bromide binding sites on DNA: application to a bent DNA fragment. Biochemistry 29, 981-988 (1990).
    • (1990) Biochemistry , vol.29 , pp. 981-988
    • Krishnamurthy, G.1    Polte, T.2    Rooney, T.3    Hogan, M.E.4
  • 30
    • 0021224287 scopus 로고
    • Site-specific carcinogen binding to DNA
    • Boles, T.C. & Hogan, M.E. Site-specific carcinogen binding to DNA. Proc. Natl. Acad. Sci. USA 81, 5623-5627 (1984).
    • (1984) Proc. Natl. Acad. Sci. USA , vol.81 , pp. 5623-5627
    • Boles, T.C.1    Hogan, M.E.2
  • 31
    • 2942561969 scopus 로고    scopus 로고
    • Topography of the ISW2-nucleosome complex: Insights into nucleosome spacing and chromatin remodeling
    • Kagalwala, M.N., Glaus, B.J., Dang, W., Zofall, M. & Bartholomew, B. Topography of the ISW2-nucleosome complex: insights into nucleosome spacing and chromatin remodeling. EMBO J. 23, 2092-2104 (2004).
    • (2004) EMBO J. , vol.23 , pp. 2092-2104
    • Kagalwala, M.N.1    Glaus, B.J.2    Dang, W.3    Zofall, M.4    Bartholomew, B.5
  • 32
    • 1842411320 scopus 로고    scopus 로고
    • Crystal structure of the nucleosome core particle at 2.8 a resolution
    • Luger, K., Mader, A.W., Richmond, R.K., Sargent, D.F. & Richmond, T.J. Crystal structure of the nucleosome core particle at 2.8 A resolution. Nature 389, 251-260 (1997).
    • (1997) Nature , vol.389 , pp. 251-260
    • Luger, K.1    Mader, A.W.2    Richmond, R.K.3    Sargent, D.F.4    Richmond, T.J.5
  • 34
    • 0036464569 scopus 로고    scopus 로고
    • A critical epitope for substrate recognition by the nucleosome remodeling ATPase ISWI
    • Clapier, C.R., Nightingale, K.P. & Becker, P.B. A critical epitope for substrate recognition by the nucleosome remodeling ATPase ISWI. Nucleic Acids Res. 30, 649-655 (2002).
    • (2002) Nucleic Acids Res. , vol.30 , pp. 649-655
    • Clapier, C.R.1    Nightingale, K.P.2    Becker, P.B.3
  • 35
    • 0023882299 scopus 로고
    • A highly basic histone H4 domain bound to the sharply bent region of nucleosomal DNA
    • Ebralidse, K.K., Grachev, S.A. & Mirzabekov, A.D. A highly basic histone H4 domain bound to the sharply bent region of nucleosomal DNA. Nature 331, 365-367 (1988).
    • (1988) Nature , vol.331 , pp. 365-367
    • Ebralidse, K.K.1    Grachev, S.A.2    Mirzabekov, A.D.3
  • 36
    • 0034686020 scopus 로고    scopus 로고
    • Purification and characterization of a human factor that assembles and remodels chromatin
    • LeRoy, G., Loyola, A., Lane, W.S. & Reinberg, D. Purification and characterization of a human factor that assembles and remodels chromatin. J. Biol. Chem. 275, 14787-14790 (2000).
    • (2000) J. Biol. Chem. , vol.275 , pp. 14787-14790
    • Leroy, G.1    Loyola, A.2    Lane, W.S.3    Reinberg, D.4
  • 37
    • 0034601076 scopus 로고    scopus 로고
    • HuCHRAC, a human ISWI chromatin remodelling complex contains hACF1 and two novel histone-fold proteins
    • Poot, R.A. et al. HuCHRAC, a human ISWI chromatin remodelling complex contains hACF1 and two novel histone-fold proteins. EMBO J. 19, 3377-3387 (2000).
    • (2000) EMBO J. , vol.19 , pp. 3377-3387
    • Poot, R.A.1
  • 38
    • 1842301048 scopus 로고    scopus 로고
    • Structural analysis of mouse rDNA: Coincidence between nuclease hypersensitive sites, DNA curvature and regulatory elements in the intergenic spacer
    • Längst, G., Schatz, T., Langowski, J. & Grummt, I. Structural analysis of mouse rDNA: coincidence between nuclease hypersensitive sites, DNA curvature and regulatory elements in the intergenic spacer. Nucleic Acids Res. 25, 511-517 (1997).
    • (1997) Nucleic Acids Res. , vol.25 , pp. 511-517
    • Längst, G.1    Schatz, T.2    Langowski, J.3    Grummt, I.4
  • 39
    • 1942439629 scopus 로고    scopus 로고
    • Mechanisms for ATP-dependent chromatin remodelling: Farewell to the tuna-can octamer?
    • Flaus, A. & Owen-Hughes, T. Mechanisms for ATP-dependent chromatin remodelling: farewell to the tuna-can octamer? Curr. Opin. Genet. Dev. 14, 165-173 (2004).
    • (2004) Curr. Opin. Genet. Dev. , vol.14 , pp. 165-173
    • Flaus, A.1    Owen-Hughes, T.2
  • 40
    • 13444259351 scopus 로고    scopus 로고
    • Chromatin remodeling by DNA bending, not twisting
    • Lorch, Y., Davis, B. & Kornberg, R.D. Chromatin remodeling by DNA bending, not twisting. Proc. Natl. Acad. Sci. USA 102, 1329-1332 (2005).
    • (2005) Proc. Natl. Acad. Sci. USA , vol.102 , pp. 1329-1332
    • Lorch, Y.1    Davis, B.2    Kornberg, R.D.3
  • 42
    • 0142027850 scopus 로고    scopus 로고
    • Dynamic properties of nucleosomes during thermal and ATP-driven mobilization
    • Flaus, A. & Owen-Hughes, T. Dynamic properties of nucleosomes during thermal and ATP-driven mobilization. Mol. Cell. Biol. 23, 7767-7779 (2003).
    • (2003) Mol. Cell. Biol. , vol.23 , pp. 7767-7779
    • Flaus, A.1    Owen-Hughes, T.2
  • 43
    • 0035313855 scopus 로고    scopus 로고
    • Mechanisms for ATP-dependent chromatin remodelling
    • Flaus, A. & Owen-Hughes, T. Mechanisms for ATP-dependent chromatin remodelling. Curr. Opin. Genet. Dev. 11, 148-154 (2001).
    • (2001) Curr. Opin. Genet. Dev. , vol.11 , pp. 148-154
    • Flaus, A.1    Owen-Hughes, T.2
  • 44
    • 0036211179 scopus 로고    scopus 로고
    • Modularity and specialization in superfamily 1 and 2 helicases
    • Singleton, M.R. & Wigley, D.B. Modularity and specialization in superfamily 1 and 2 helicases. J. Bacteriol. 184, 1819-1826 (2002).
    • (2002) J. Bacteriol. , vol.184 , pp. 1819-1826
    • Singleton, M.R.1    Wigley, D.B.2
  • 45
    • 6344285336 scopus 로고    scopus 로고
    • Reaction cycle of the yeast Isw2 chromatin remodeling complex
    • Fitzgerald, D.J. et al. Reaction cycle of the yeast Isw2 chromatin remodeling complex. EMBO J. 23, 3836-3843 (2004).
    • (2004) EMBO J. , vol.23 , pp. 3836-3843
    • Fitzgerald, D.J.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.