-
1
-
-
0032828715
-
A generic protein purification method for protein complex characterization and proteome exploration
-
G. Rigaut, A. Shevchenko, B. Rutz, M. Wilm, M. Mann, and B. Seraphin A generic protein purification method for protein complex characterization and proteome exploration Nat Biotechnol 17 1999 1030 1032
-
(1999)
Nat Biotechnol
, vol.17
, pp. 1030-1032
-
-
Rigaut, G.1
Shevchenko, A.2
Rutz, B.3
Wilm, M.4
Mann, M.5
Seraphin, B.6
-
2
-
-
0037050004
-
Systematic identification of protein complexes in Saccharomyces cerevisiae by mass spectrometry
-
Y. Ho, A. Gruhler, A. Heilbut, G.D. Bader, L. Moore, S.L. Adams, A. Millar, P. Taylor, K. Bennett, and K. Boutilier Systematic identification of protein complexes in Saccharomyces cerevisiae by mass spectrometry Nature 415 2002 180 183
-
(2002)
Nature
, vol.415
, pp. 180-183
-
-
Ho, Y.1
Gruhler, A.2
Heilbut, A.3
Bader, G.D.4
Moore, L.5
Adams, S.L.6
Millar, A.7
Taylor, P.8
Bennett, K.9
Boutilier, K.10
-
3
-
-
0037050026
-
Functional organization of the yeast proteome by systematic analysis of protein complexes
-
A.C. Gavin, M. Bosche, R. Krause, P. Grandi, M. Marzioch, A. Bauer, J. Schultz, J.M. Rick, A.M. Michon, and C.M. Cruciat Functional organization of the yeast proteome by systematic analysis of protein complexes Nature 415 2002 141 147
-
(2002)
Nature
, vol.415
, pp. 141-147
-
-
Gavin, A.C.1
Bosche, M.2
Krause, R.3
Grandi, P.4
Marzioch, M.5
Bauer, A.6
Schultz, J.7
Rick, J.M.8
Michon, A.M.9
Cruciat, C.M.10
-
4
-
-
0037161731
-
Comparative assessment of large-scale data sets of protein-protein interactions
-
C. von Mering, R. Krause, B. Snel, M. Cornell, S.G. Oliver, S. Fields, and P. Bork Comparative assessment of large-scale data sets of protein-protein interactions Nature 417 2002 399 403
-
(2002)
Nature
, vol.417
, pp. 399-403
-
-
Von Mering, C.1
Krause, R.2
Snel, B.3
Cornell, M.4
Oliver, S.G.5
Fields, S.6
Bork, P.7
-
5
-
-
1642314524
-
A novel proteomic screen for peptide-protein interactions
-
W.X. Schulze, and M. Mann A novel proteomic screen for peptide-protein interactions J Biol Chem 279 2004 10756 10764
-
(2004)
J Biol Chem
, vol.279
, pp. 10756-10764
-
-
Schulze, W.X.1
Mann, M.2
-
6
-
-
0037370399
-
The study of macromolecular complexes by quantitative proteomics
-
J.A. Ranish, E.C. Yi, D.M. Leslie, S.O. Purvine, D.R. Goodlett, J. Eng, and R. Aebersold The study of macromolecular complexes by quantitative proteomics Nat Genet 33 2003 349 355 A very elegant quantitative strategy for affinity purification based on chemical labelling with stable isotopes and specific identification of promoter complex proteins combining molecular genetics, biochemistry and MS.
-
(2003)
Nat Genet
, vol.33
, pp. 349-355
-
-
Ranish, J.A.1
Yi, E.C.2
Leslie, D.M.3
Purvine, S.O.4
Goodlett, D.R.5
Eng, J.6
Aebersold, R.7
-
7
-
-
0344177897
-
Present and future of surface plasmon resonance biosensors
-
J. Homola Present and future of surface plasmon resonance biosensors Anal Bioanal Chem 377 2003 528 539
-
(2003)
Anal Bioanal Chem
, vol.377
, pp. 528-539
-
-
Homola, J.1
-
9
-
-
0037271476
-
Design and use of multi-affinity surfaces in biomolecular interaction analysis-mass spectrometry (BIA/MS): A step toward the design of SPR/MS arrays
-
D. Nedelkov, and R.W. Nelson Design and use of multi-affinity surfaces in biomolecular interaction analysis-mass spectrometry (BIA/MS): a step toward the design of SPR/MS arrays J Mol Recognit 16 2003 15 19
-
(2003)
J Mol Recognit
, vol.16
, pp. 15-19
-
-
Nedelkov, D.1
Nelson, R.W.2
-
10
-
-
0141816864
-
Detection of staphylococcal enterotoxin B via Biomolecular interaction analysis mass spectrometry
-
D. Nedelkov, and R.W. Nelson Detection of staphylococcal enterotoxin B via Biomolecular interaction analysis mass spectrometry Appl Environ Microbiol 69 2003 5212 5215
-
(2003)
Appl Environ Microbiol
, vol.69
, pp. 5212-5215
-
-
Nedelkov, D.1
Nelson, R.W.2
-
11
-
-
0035697180
-
The interaction between endopolygalacturonase from Fusarium moniliforme and PGIP from Phaseolus vulgaris studied by surface plasmon resonance and mass spectrometry
-
B. Mattei, F. Cervone, and P. Roepstorff The interaction between endopolygalacturonase from Fusarium moniliforme and PGIP from Phaseolus vulgaris studied by surface plasmon resonance and mass spectrometry Comp Funct Genom 2 2001 359 364
-
(2001)
Comp Funct Genom
, vol.2
, pp. 359-364
-
-
Mattei, B.1
Cervone, F.2
Roepstorff, P.3
-
12
-
-
0037432160
-
Detection of bound and free IGF-1 and IGF-2 in human plasma via biomolecular interaction analysis mass spectrometry
-
D. Nedelkov, R.W. Nelson, U.A. Kiernan, E.E. Niederkofler, and K.A. Tubbs Detection of bound and free IGF-1 and IGF-2 in human plasma via biomolecular interaction analysis mass spectrometry FEBS Lett 536 2003 130 134
-
(2003)
FEBS Lett
, vol.536
, pp. 130-134
-
-
Nedelkov, D.1
Nelson, R.W.2
Kiernan, U.A.3
Niederkofler, E.E.4
Tubbs, K.A.5
-
13
-
-
4544303840
-
Screening for enzyme inhibitors by surface plasmon resonance combined with mass spectrometry
-
J. Borch, and P. Roepstorff Screening for enzyme inhibitors by surface plasmon resonance combined with mass spectrometry Anal Chem 76 2004 5243 5248 A sensor chip with immobilized carboxypeptidase was used to screen extracts for carboxypeptidase inhibitors. SPR measured real-time binding and MS measured enzymatic activity and identified and characterization the inhibitors.
-
(2004)
Anal Chem
, vol.76
, pp. 5243-5248
-
-
Borch, J.1
Roepstorff, P.2
-
14
-
-
0026625689
-
Protein surface topology-probing by selective chemical modification and mass-spectrometric peptide-mapping
-
D. Suckau, M. Mak, and M. Przybylski Protein surface topology-probing by selective chemical modification and mass-spectrometric peptide-mapping Proc Natl Acad Sci USA 89 1992 5630 5634
-
(1992)
Proc Natl Acad Sci USA
, vol.89
, pp. 5630-5634
-
-
Suckau, D.1
Mak, M.2
Przybylski, M.3
-
15
-
-
0037058982
-
Identification of specific HIV-1 reverse transcriptase contacts to the viral RNA:tRNA complex by mass spectrometry and a primary amine selective reagent
-
M. Kvaratskhelia, J.T. Miller, S.R. Budihas, L.K. Pannell, and S.F.J. Le Grice Identification of specific HIV-1 reverse transcriptase contacts to the viral RNA:tRNA complex by mass spectrometry and a primary amine selective reagent Proc Natl Acad Sci USA 99 2002 15988 15993
-
(2002)
Proc Natl Acad Sci USA
, vol.99
, pp. 15988-15993
-
-
Kvaratskhelia, M.1
Miller, J.T.2
Budihas, S.R.3
Pannell, L.K.4
Le Grice, S.F.J.5
-
16
-
-
0037035538
-
Mapping the G-actin binding surface of cofilin using synchrotron protein footprinting
-
J.Q. Guan, S. Vorobiev, S.C. Almo, and M.R. Chance Mapping the G-actin binding surface of cofilin using synchrotron protein footprinting Biochemistry 41 2002 5765 5775
-
(2002)
Biochemistry
, vol.41
, pp. 5765-5775
-
-
Guan, J.Q.1
Vorobiev, S.2
Almo, S.C.3
Chance, M.R.4
-
17
-
-
0037388073
-
2+-dependent activation of gelsolin by using synchrotron footprinting
-
2+ induced protection against oxidation. The protected residues were localized by peptide-mass mapping and modelled on the crystal structure, indicating a three-state activation process.
-
(2003)
Proc Natl Acad Sci USA
, vol.100
, pp. 3942-3947
-
-
Kiselar, J.G.1
Janmey, P.A.2
Almo, S.C.3
Chance, M.R.4
-
18
-
-
0033135224
-
Direct identification of protein epitopes by mass spectrometry without immobilization of antibody and isolation of antibody-peptide complexes
-
J.G. Kiselar, and K.M. Downard Direct identification of protein epitopes by mass spectrometry without immobilization of antibody and isolation of antibody-peptide complexes Anal Chem 71 1999 1792 1801
-
(1999)
Anal Chem
, vol.71
, pp. 1792-1801
-
-
Kiselar, J.G.1
Downard, K.M.2
-
19
-
-
0035497782
-
Radical approaches to probe protein structure, folding, and interactions by mass spectrometry
-
S.D. Maleknia, and K. Downard Radical approaches to probe protein structure, folding, and interactions by mass spectrometry Mass Spectrom Rev 20 2001 388 401
-
(2001)
Mass Spectrom Rev
, vol.20
, pp. 388-401
-
-
Maleknia, S.D.1
Downard, K.2
-
20
-
-
0038385497
-
Affinity mass spectrometry-based approaches for the analysis of protein-protein interaction and complex mixtures of peptide-ligands
-
A.H. Rüdiger, M. Rüdiger, U.D. Carl, T. Chakraborty, P. Roepstorff, and J. Wehland Affinity mass spectrometry-based approaches for the analysis of protein-protein interaction and complex mixtures of peptide-ligands Anal Biochem 275 1999 162 170
-
(1999)
Anal Biochem
, vol.275
, pp. 162-170
-
-
Rüdiger, A.H.1
Rüdiger, M.2
Carl, U.D.3
Chakraborty, T.4
Roepstorff, P.5
Wehland, J.6
-
21
-
-
0141792174
-
Human rhinovirus capsid dynamics is controlled by canyon flexibility
-
18O water allows relative quantification of protease accessibility, and thus reveals different binding mechanisms of different drugs.
-
(2003)
Virology
, vol.314
, pp. 34-44
-
-
Reisdorph, N.1
Thomas, J.J.2
Katpally, U.3
Chase, E.4
Harris, K.5
Siuzdak, G.6
Smith, T.J.7
-
22
-
-
2442641513
-
Identification of protein-protein interfaces implicated in CD80-CD28 costimulatory signaling
-
P. Sørensen, M. Kussmann, A. Rosen, K.L. Bennett, D.D. Thrige, K. Uvebrant, B. Walse, P. Roepstorff, and P. Bjork Identification of protein-protein interfaces implicated in CD80-CD28 costimulatory signaling J Immunol 172 2004 6803 6809 The recombinantly solubilized receptor was oriented by immobilization on affinity beads to mimic the avidity effects that exist in the native membrane-spanning protein. Thiol-cleavable cross-linking and surface labelling revealed residues at the boundaries of the interaction interface and other changes in solvent accessibility.
-
(2004)
J Immunol
, vol.172
, pp. 6803-6809
-
-
Sørensen, P.1
Kussmann, M.2
Rosen, A.3
Bennett, K.L.4
Thrige, D.D.5
Uvebrant, K.6
Walse, B.7
Roepstorff, P.8
Bjork, P.9
-
23
-
-
10644254712
-
Identification of protein-protein interactions using in vivo cross-linking and mass spectrometry
-
J. Vasilescu, X.C. Guo, and J. Kast Identification of protein-protein interactions using in vivo cross-linking and mass spectrometry Proteomics 4 2004 3845 3854
-
(2004)
Proteomics
, vol.4
, pp. 3845-3854
-
-
Vasilescu, J.1
Guo, X.C.2
Kast, J.3
-
24
-
-
2542583141
-
Time-controlled transcardiac perfusion cross-linking for the study of protein interactions in complex tissues
-
G. Schmitt-Ulms, K. Hansen, J. Liu, C. Cowdrey, J. Yang, S.J. DeArmond, F.E. Cohen, S.B. Prusiner, and M.A. Baldwin Time-controlled transcardiac perfusion cross-linking for the study of protein interactions in complex tissues Nat Biotechnol 22 2004 724 731
-
(2004)
Nat Biotechnol
, vol.22
, pp. 724-731
-
-
Schmitt-Ulms, G.1
Hansen, K.2
Liu, J.3
Cowdrey, C.4
Yang, J.5
Dearmond, S.J.6
Cohen, F.E.7
Prusiner, S.B.8
Baldwin, M.A.9
-
25
-
-
0038793240
-
Three-dimensional structure and subunit topology of the V-1 ATPase from Manduca sexta midgut
-
G. Gruber, M. Radermacher, T. Ruiz, J. Godovac-Zimmermann, B. Canas, D. Kleine-Kohlbrecher, M. Huss, W.R. Harvey, and H. Wieczorek Three-dimensional structure and subunit topology of the V-1 ATPase from Manduca sexta midgut Biochemistry 39 2000 8609 8616
-
(2000)
Biochemistry
, vol.39
, pp. 8609-8616
-
-
Gruber, G.1
Radermacher, M.2
Ruiz, T.3
Godovac-Zimmermann, J.4
Canas, B.5
Kleine-Kohlbrecher, D.6
Huss, M.7
Harvey, W.R.8
Wieczorek, H.9
-
26
-
-
0034650492
-
A generic strategy to analyze the spatial organization of multi-protein complexes by cross-linking and mass spectrometry
-
J. Rappsilber, S. Siniossoglou, E.C. Hurt, and M. Mann A generic strategy to analyze the spatial organization of multi-protein complexes by cross-linking and mass spectrometry Anal Chem 72 2000 267 275
-
(2000)
Anal Chem
, vol.72
, pp. 267-275
-
-
Rappsilber, J.1
Siniossoglou, S.2
Hurt, E.C.3
Mann, M.4
-
27
-
-
0347286732
-
Chemical cross-linking and mass spectrometry for mapping three-dimensional structures of proteins and protein complexes
-
A. Sinz Chemical cross-linking and mass spectrometry for mapping three-dimensional structures of proteins and protein complexes J Mass Spectrom 38 2003 1225 1237
-
(2003)
J Mass Spectrom
, vol.38
, pp. 1225-1237
-
-
Sinz, A.1
-
28
-
-
0042349690
-
Chemical cross-linking and mass spectrometry for protein structural modeling
-
J.W. Back, L. de Jong, A.O. Muijsers, and C.G. de Koster Chemical cross-linking and mass spectrometry for protein structural modeling J Mol Biol 331 2003 303 313
-
(2003)
J Mol Biol
, vol.331
, pp. 303-313
-
-
Back, J.W.1
De Jong, L.2
Muijsers, A.O.3
De Koster, C.G.4
-
29
-
-
0035326345
-
Isotope tagged cross linking reagents. a new tool in mass spectrometric protein interaction analysis
-
D.R. Müller, P. Schindler, H. Towbin, U. Wirth, H. Voshol, S. Hoving, and M.O. Steinmetz Isotope tagged cross linking reagents. A new tool in mass spectrometric protein interaction analysis Anal Chem 73 2001 1927 1934
-
(2001)
Anal Chem
, vol.73
, pp. 1927-1934
-
-
Müller, D.R.1
Schindler, P.2
Towbin, H.3
Wirth, U.4
Voshol, H.5
Hoving, S.6
Steinmetz, M.O.7
-
30
-
-
2242437182
-
Characterization of an antagonist interleukin-6 dimer by stable isotope labeling, cross-linking, and mass spectrometry
-
15N. Subsequently, the isotopic forms were mixed, digested and cross-linked. Intermolecular peptides were distinguished from intramolecular cross-linked peptides by their isotope distributions as revealed by MS.
-
(2002)
J Biol Chem
, vol.277
, pp. 46487-46492
-
-
Taverner, T.1
Hall, N.E.2
O'Hair, R.A.J.3
Simpson, R.J.4
-
31
-
-
0036714166
-
Identification of cross-linked peptides for protein interaction studies using mass spectrometry and O-18 labeling
-
J.W. Back, V. Notenboom, L.J. de Koning, A.O. Muijsers, T.K. Sixma, C.G. de Koster, and L.Z. de Jong Identification of cross-linked peptides for protein interaction studies using mass spectrometry and O-18 labeling Anal Chem 74 2002 4417 4422
-
(2002)
Anal Chem
, vol.74
, pp. 4417-4422
-
-
Back, J.W.1
Notenboom, V.2
De Koning, L.J.3
Muijsers, A.O.4
Sixma, T.K.5
De Koster, C.G.6
De Jong, L.Z.7
-
32
-
-
0036558160
-
Identification of components of protein complexes using a fluorescent photo-cross-linker and mass spectrometry
-
R.N. Wine, J.M. Dial, K.B. Tomer, and C.H. Borchers Identification of components of protein complexes using a fluorescent photo-cross-linker and mass spectrometry Anal Chem 74 2002 1939 1945
-
(2002)
Anal Chem
, vol.74
, pp. 1939-1945
-
-
Wine, R.N.1
Dial, J.M.2
Tomer, K.B.3
Borchers, C.H.4
-
33
-
-
0035800080
-
Mapping protein interfaces with a fluorogenic cross-linker and mass spectrometry: Application to nebulin-calmodulin complexes
-
A. Sinz, and K. Wang Mapping protein interfaces with a fluorogenic cross-linker and mass spectrometry: Application to nebulin-calmodulin complexes Biochemistry 40 2001 7903 7913
-
(2001)
Biochemistry
, vol.40
, pp. 7903-7913
-
-
Sinz, A.1
Wang, K.2
-
34
-
-
11844289583
-
Mass spectrometry identifiable cross-linking strategy for studying protein-protein interactions
-
X. Tang, G.R. Munske, W.F. Siems, and J.E. Bruce Mass spectrometry identifiable cross-linking strategy for studying protein-protein interactions Anal Chem 77 2005 311 318
-
(2005)
Anal Chem
, vol.77
, pp. 311-318
-
-
Tang, X.1
Munske, G.R.2
Siems, W.F.3
Bruce, J.E.4
-
35
-
-
12244285932
-
Chemical cross-linking and high-performance Fourier transform ion cyclotron resonance mass spectrometry for protein interaction analysis: Application to a calmodulin/target peptide complex
-
S. Kalkhof, C. Ihling, K. Mechtler, and A. Sinz Chemical cross-linking and high-performance Fourier transform ion cyclotron resonance mass spectrometry for protein interaction analysis: Application to a calmodulin/target peptide complex Anal Chem 77 2005 495 503
-
(2005)
Anal Chem
, vol.77
, pp. 495-503
-
-
Kalkhof, S.1
Ihling, C.2
Mechtler, K.3
Sinz, A.4
-
36
-
-
1942470540
-
Mapping the topology and determination of a low-resolution three-dimensional structure of the calmodulin-melittin complex by chemical cross-linking and high-resolution FTICRMS: Direct demonstration of multiple binding modes
-
D.M. Schulz, C. Ihling, G.M. Clore, and A. Sinz Mapping the topology and determination of a low-resolution three-dimensional structure of the calmodulin-melittin complex by chemical cross-linking and high-resolution FTICRMS: Direct demonstration of multiple binding modes Biochemistry 43 2004 4703 4715
-
(2004)
Biochemistry
, vol.43
, pp. 4703-4715
-
-
Schulz, D.M.1
Ihling, C.2
Clore, G.M.3
Sinz, A.4
-
37
-
-
14744304574
-
Proteomics by FTICR mass spectrometry: Top down and bottom up
-
B. Bogdanov, and R.D. Smith Proteomics by FTICR mass spectrometry: top down and bottom up Mass Spectrom Rev 24 2005 168 200
-
(2005)
Mass Spectrom Rev
, vol.24
, pp. 168-200
-
-
Bogdanov, B.1
Smith, R.D.2
-
38
-
-
0037236038
-
A top down approach to protein structural studies using chemical cross-linking and Fourier transform mass spectrometry
-
G.H. Kruppa, J. Schoeniger, and M.M. Young A top down approach to protein structural studies using chemical cross-linking and Fourier transform mass spectrometry Rapid Commun Mass Spectrom 17 2003 155 162
-
(2003)
Rapid Commun Mass Spectrom
, vol.17
, pp. 155-162
-
-
Kruppa, G.H.1
Schoeniger, J.2
Young, M.M.3
-
39
-
-
0035326304
-
Investigating protein structure and dynamics by hydrogen exchange MS
-
J.R. Engen, and D.L. Smith Investigating protein structure and dynamics by hydrogen exchange MS Anal Chem 73 2001 256A 265A
-
(2001)
Anal Chem
, vol.73
-
-
Engen, J.R.1
Smith, D.L.2
-
41
-
-
0038271924
-
Protein-folding kinetics and mechanisms studied by pulse-labeling and mass spectrometry
-
L. Konermann, and D.A. Simmons Protein-folding kinetics and mechanisms studied by pulse-labeling and mass spectrometry Mass Spectrom Rev 22 2003 1 26
-
(2003)
Mass Spectrom Rev
, vol.22
, pp. 1-26
-
-
Konermann, L.1
Simmons, D.A.2
-
42
-
-
1842861593
-
High-sensitivity mass spectrometry for imaging subunit interactions: Hydrogen/deuterium exchange
-
J. Lanman, and P.E. Prevelige High-sensitivity mass spectrometry for imaging subunit interactions: hydrogen/deuterium exchange Curr Opin Struct Biol 14 2004 181 188
-
(2004)
Curr Opin Struct Biol
, vol.14
, pp. 181-188
-
-
Lanman, J.1
Prevelige, P.E.2
-
43
-
-
1842868694
-
Mass spectrometric approaches using electrospray ionization charge states and hydrogen-deuterium exchange for determining protein structures and their conformational changes
-
X. Yan, J. Watson, P.S. Ho, and M.L. Deinzer Mass spectrometric approaches using electrospray ionization charge states and hydrogen-deuterium exchange for determining protein structures and their conformational changes Mol Cell Proteomics 3 2004 10 23
-
(2004)
Mol Cell Proteomics
, vol.3
, pp. 10-23
-
-
Yan, X.1
Watson, J.2
Ho, P.S.3
Deinzer, M.L.4
-
44
-
-
0031912073
-
Determinants of protein hydrogen exchange studied in equine cytochrome c
-
J.S. Milne, L. Mayne, H. Roder, A.J. Wand, and S.W. Englander Determinants of protein hydrogen exchange studied in equine cytochrome c Protein Sci 7 1998 739 745
-
(1998)
Protein Sci
, vol.7
, pp. 739-745
-
-
Milne, J.S.1
Mayne, L.2
Roder, H.3
Wand, A.J.4
Englander, S.W.5
-
45
-
-
11844273165
-
Protein-protein interaction dynamics by amide H/H-2 exchange mass spectrometry
-
E.A. Komives Protein-protein interaction dynamics by amide H/H-2 exchange mass spectrometry Int J Mass Spectrom 240 2005 285 290
-
(2005)
Int J Mass Spectrom
, vol.240
, pp. 285-290
-
-
Komives, E.A.1
-
46
-
-
0942290634
-
Dynamics and ligand-induced solvent accessibility changes in human retinoid X receptor homodimer determined by hydrogen deuterium exchange and mass spectrometry
-
X. Yan, D. Broderick, M.E. Leid, M.I. Schimerlik, and M.L. Deinzer Dynamics and ligand-induced solvent accessibility changes in human retinoid X receptor homodimer determined by hydrogen deuterium exchange and mass spectrometry Biochemistry 43 2004 909 917
-
(2004)
Biochemistry
, vol.43
, pp. 909-917
-
-
Yan, X.1
Broderick, D.2
Leid, M.E.3
Schimerlik, M.I.4
Deinzer, M.L.5
-
47
-
-
3042648569
-
Key interactions in HIV-1 maturation identified by hydrogen-deuterium exchange
-
J. Lanman, T.T. Lam, M.R. Emmett, A.G. Marshall, M. Sakalian, and P.E. Prevelige Key interactions in HIV-1 maturation identified by hydrogen-deuterium exchange Nat Struct Mol Biol 11 2004 676 677
-
(2004)
Nat Struct Mol Biol
, vol.11
, pp. 676-677
-
-
Lanman, J.1
Lam, T.T.2
Emmett, M.R.3
Marshall, A.G.4
Sakalian, M.5
Prevelige, P.E.6
-
48
-
-
3242884785
-
Structural determinants for generating centromeric chromatin
-
B.E. Black, D.R. Foltz, S. Chakravarthy, K. Luger, V.L. Woods, and D.W. Cleveland Structural determinants for generating centromeric chromatin Nature 430 2004 578 582
-
(2004)
Nature
, vol.430
, pp. 578-582
-
-
Black, B.E.1
Foltz, D.R.2
Chakravarthy, S.3
Luger, K.4
Woods, V.L.5
Cleveland, D.W.6
-
49
-
-
0042318880
-
Solution structure and dynamics of a heat shock protein assembly probed by hydrogen exchange and mass spectrometry
-
P.L. Wintrode, K.L. Friedrich, E. Vierling, J.B. Smith, and D.L. Smith Solution structure and dynamics of a heat shock protein assembly probed by hydrogen exchange and mass spectrometry Biochemistry 42 2003 10667 10673 This study demonstrates the necessity of employing short isotopic exchange periods (pulse labeling) to study dynamic protein complexes. After 5 s deuteration, no protection against exchange was evident in the protein subunit interfaces. However, a shorter deuteration period (10 ms) revealed the presence of a protection pattern.
-
(2003)
Biochemistry
, vol.42
, pp. 10667-10673
-
-
Wintrode, P.L.1
Friedrich, K.L.2
Vierling, E.3
Smith, J.B.4
Smith, D.L.5
-
50
-
-
13844281065
-
Reduced global cooperativity is a common feature underlying the amyloidogenicity of pathogenic lysozyme mutations
-
M. Dumoulin, D. Canet, A.M. Last, E. Pardon, D.B. Archer, S. Muyldermans, L. Wyns, A. Matagne, C.V. Robinson, and C. Redfield Reduced global cooperativity is a common feature underlying the amyloidogenicity of pathogenic lysozyme mutations J Mol Biol 346 2005 773 788 In two different lysozyme mutants, the same structural segment is destabilized and undergoes a transient cooperative unfolding. This process triggers the formation of amyloid fibrils. Upon binding to an antibody fragment, the structural segment is stabilized and fibrillation is abrogated.
-
(2005)
J Mol Biol
, vol.346
, pp. 773-788
-
-
Dumoulin, M.1
Canet, D.2
Last, A.M.3
Pardon, E.4
Archer, D.B.5
Muyldermans, S.6
Wyns, L.7
Matagne, A.8
Robinson, C.V.9
Redfield, C.10
-
51
-
-
15544363358
-
Unfolding, aggregation, and seeded amyloid formation of lysine-58-cleaved beta(2)-microglobulin
-
N.H.H. Heegaard, T.J.D. Jørgensen, N. Rozlosnik, D.B. Corlin, J.S. Pedersen, A.G. Tempesta, P. Roepstorff, R. Bauer, and M.H. Nissen Unfolding, aggregation, and seeded amyloid formation of lysine-58-cleaved beta(2)-microglobulin Biochemistry 44 2005 4397 4407
-
(2005)
Biochemistry
, vol.44
, pp. 4397-4407
-
-
Heegaard, N.H.H.1
Jørgensen, T.J.D.2
Rozlosnik, N.3
Corlin, D.B.4
Pedersen, J.S.5
Tempesta, A.G.6
Roepstorff, P.7
Bauer, R.8
Nissen, M.H.9
-
52
-
-
9744223518
-
Dynamics of urokinase receptor interaction with peptide antagonists studied by amide hydrogen exchange and mass spectrometry
-
T.J.D. Jørgensen, H. Gårdsvoll, K. Danø, P. Roepstorff, and M. Ploug Dynamics of urokinase receptor interaction with peptide antagonists studied by amide hydrogen exchange and mass spectrometry Biochemistry 43 2004 15044 15057 This study shows that dissociation of the receptor-peptide complexes leads to a correlated exchange of nearly all amide hydrogens on the peptide ligand. This yields bimodal isotope patterns from which dissociation rate constants can be determined.
-
(2004)
Biochemistry
, vol.43
, pp. 15044-15057
-
-
Jørgensen, T.J.D.1
Gårdsvoll, H.2
Danø, K.3
Roepstorff, P.4
Ploug, M.5
-
53
-
-
11844258744
-
PLIMSTEX: A novel mass spectrometric method for the quantification of protein-ligand interactions in solution
-
M.M. Zhu, R. Chitta, and M.L. Gross PLIMSTEX: a novel mass spectrometric method for the quantification of protein-ligand interactions in solution Int J Mass Spectrom 240 2005 213 220
-
(2005)
Int J Mass Spectrom
, vol.240
, pp. 213-220
-
-
Zhu, M.M.1
Chitta, R.2
Gross, M.L.3
-
54
-
-
14744272834
-
Intramolecular migration of amide hydrogens in protonated peptides upon collisional activation
-
2H) scrambling is such a dominating factor during low-energy collisional activation of doubly protonated peptides, that the original deuterium pattern of these peptides is completely erased.
-
(2005)
J Am Chem Soc
, vol.127
, pp. 2785-2793
-
-
Jørgensen, T.J.D.1
Gårdsvoll, H.2
Ploug, M.3
Roepstorff, P.4
-
55
-
-
0000944563
-
Electron capture dissociation of multiply charged protein cations. a nonergodic process
-
R.A. Zubarev, N.L. Kelleher, and F.W. McLafferty Electron capture dissociation of multiply charged protein cations. A nonergodic process J Am Chem Soc 120 1998 3265 3266
-
(1998)
J Am Chem Soc
, vol.120
, pp. 3265-3266
-
-
Zubarev, R.A.1
Kelleher, N.L.2
McLafferty, F.W.3
-
57
-
-
4644327652
-
Native protein mass spectrometry: From intact oligomers to functional machineries
-
R.H. van den Heuvel, and A.J.R. Heck Native protein mass spectrometry: from intact oligomers to functional machineries Curr Opin Chem Biol 8 2004 519 526
-
(2004)
Curr Opin Chem Biol
, vol.8
, pp. 519-526
-
-
Van Den Heuvel, R.H.1
Heck, A.J.R.2
-
58
-
-
4444243006
-
Investigation of intact protein complexes by mass spectrometry
-
A.J.R. Heck, and R.H.H. van den Heuvel Investigation of intact protein complexes by mass spectrometry Mass Spectrom Rev 23 2004 368 389
-
(2004)
Mass Spectrom Rev
, vol.23
, pp. 368-389
-
-
Heck, A.J.R.1
Van Den Heuvel, R.H.H.2
-
59
-
-
14544299737
-
Mass spectrometry of intact ribosomes
-
H. Videler, L.L. Ilag, A.R.C. McKay, C.L. Hanson, and C.V. Robinson Mass spectrometry of intact ribosomes FEBS Lett 579 2005 943 947
-
(2005)
FEBS Lett
, vol.579
, pp. 943-947
-
-
Videler, H.1
Ilag, L.L.2
McKay, A.R.C.3
Hanson, C.L.4
Robinson, C.V.5
-
60
-
-
4544232304
-
Electrospray ionization of a whole virus: Analyzing mass, structure, and viability
-
B. Bothner, and G. Siuzdak Electrospray ionization of a whole virus: analyzing mass, structure, and viability ChemBioChem 5 2004 258 260
-
(2004)
ChemBioChem
, vol.5
, pp. 258-260
-
-
Bothner, B.1
Siuzdak, G.2
-
61
-
-
18244396336
-
Monitoring macromolecular complexes involved in the chaperonin-assisted protein folding cycle by mass spectrometry
-
E. van Duijn, P.J. Bakkes, R.M.A. Heeren, R.H.H. van den Heuvell, H. van Heerikhuizen, S.M. van der Vies, and A.J.R. Heck Monitoring macromolecular complexes involved in the chaperonin-assisted protein folding cycle by mass spectrometry Nat Methods 2 2005 371 376 In this study, the chaperonin-assisted refolding process of an unfolded monomeric bacteriophage capsid protein (gp23) into folded hexameric complex is elegantly monitored by ESI-MS.
-
(2005)
Nat Methods
, vol.2
, pp. 371-376
-
-
Van Duijn, E.1
Bakkes, P.J.2
Heeren, R.M.A.3
Van Den Heuvell, R.H.H.4
Van Heerikhuizen, H.5
Van Der Vies, S.M.6
Heck, A.J.R.7
-
62
-
-
4344666177
-
Characterising electrosprayed biomolecules using tandem-MS - The noncovalent GroEL chaperonin assembly
-
F. Sobott, and C.V. Robinson Characterising electrosprayed biomolecules using tandem-MS - the noncovalent GroEL chaperonin assembly Int J Mass Spectrom 236 2004 25 32
-
(2004)
Int J Mass Spectrom
, vol.236
, pp. 25-32
-
-
Sobott, F.1
Robinson, C.V.2
-
63
-
-
0037428392
-
Dissociation of intact Escherichia coli ribosomes in a mass spectrometer - Evidence for conformational change in a ribosome elongation factor g complex
-
C.L. Hanson, P. Fucini, L.L. Ilag, K.H. Nierhaus, and C.V. Robinson Dissociation of intact Escherichia coli ribosomes in a mass spectrometer - Evidence for conformational change in a ribosome elongation factor g complex J Biol Chem 278 2003 1259 1267
-
(2003)
J Biol Chem
, vol.278
, pp. 1259-1267
-
-
Hanson, C.L.1
Fucini, P.2
Ilag, L.L.3
Nierhaus, K.H.4
Robinson, C.V.5
-
64
-
-
2942731426
-
Probing the ultra-high resolution structure of aldose reductase with molecular modelling and noncovalent mass spectrometry
-
C. Darmanin, G. Chevreux, N. Potier, A. Van Dorsselaer, I. Hazemann, A. Podjarny, and O. El-Kabbani Probing the ultra-high resolution structure of aldose reductase with molecular modelling and noncovalent mass spectrometry Bioorg Med Chem 12 2004 3797 3806
-
(2004)
Bioorg Med Chem
, vol.12
, pp. 3797-3806
-
-
Darmanin, C.1
Chevreux, G.2
Potier, N.3
Van Dorsselaer, A.4
Hazemann, I.5
Podjarny, A.6
El-Kabbani, O.7
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