Identification of specific HIV-1 reverse transcriptase contacts to the viral RNA:tRNA complex by mass spectrometry and a primary amine selective reagent

Proceedings of the National Academy of Sciences of the United States of America

Volumn 99, Issue 25, 2002, Pages 15988-15993

  Kvaratskhelia, Mamuka ^a   Miller, Jennifer T ^a   Budihas, Scott R ^a   Pannell, Lewis K ^b   Le Grice, Stuart F J ^a  

^a NATIONAL CANCER INSTITUTE   (United States)

^b NATIONAL INSTITUTES OF HEALTH   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

BIOTIN DERIVATIVE; DNA; N HYDROXYSUCCINIMIDOBIOTIN; PEPTIDE FRAGMENT; PROTEIN P66; RNA DIRECTED DNA POLYMERASE; TRANSFER RNA; UNCLASSIFIED DRUG; VIRUS RNA;

ANALYTIC METHOD; ARTICLE; COMPLEX FORMATION; HUMAN IMMUNODEFICIENCY VIRUS 1; MASS SPECTROMETRY; MOLECULAR INTERACTION; NONHUMAN; PRIORITY JOURNAL; PROTEIN DEGRADATION; PROTEIN FOOTPRINTING;

AMINO ACID SEQUENCE; BINDING SITES; BIOTIN; BIOTINYLATION; DNA; HIV-1 REVERSE TRANSCRIPTASE; HUMANS; INDICATORS AND REAGENTS; LYSINE; MACROMOLECULAR SUBSTANCES; MODELS, MOLECULAR; MOLECULAR SEQUENCE DATA; MULTIPROTEIN COMPLEXES; PROTEIN BINDING; PROTEIN CONFORMATION; PROTEIN FOOTPRINTING; PROTEIN INTERACTION MAPPING; PROTEIN STRUCTURE, TERTIARY; RNA, TRANSFER, LYS; RNA, VIRAL; SPECTROMETRY, MASS, MATRIX-ASSISTED LASER DESORPTION-IONIZATION; SUCCINIMIDES;

HUMAN IMMUNODEFICIENCY VIRUS; HUMAN IMMUNODEFICIENCY VIRUS 1; RNA VIRUSES;

EID: 0037058982     PISSN: 00278424     EISSN: None     Source Type: Journal    
DOI: 10.1073/pnas.252550199     Document Type: Article

References (34)

1. Telesnitsky, A. & Goff, S. P. (1997) in Retroviruses, eds. Coffin, J. M., Hughes, S. H. & Varmus, H. E. (Cold Spring Harbor Lab. Press, Plainview, NY), pp. 121-160.
2. Kleiman, L. (2002) IUBMB Life 53, 107-114.
3. Yu, Q. & Morrow, C. D. (2000) Nucleic Acids Res. 28, 4783-4789.
4. Zhang, Z., Kang, S. M., Li, Y. & Morrow, C. D. (1998) RNA 4, 394-406.
5. Lund, A. H., Duch, M., Lovmand, J., Jorgensen, P. & Pedersen, F. S. (1997) J. Virol. 71, 1191-1195.
6. Li, Y., Zhang, Z, Wakefield, J. K., Kang, S. M. & Morrow, C. D. (1997) J. Virol. 71, 6315-6322.
7. Lanchy, J. M., Isel, C., Keith, G., Le Grice, S. F. J., Ehresmann, C., Ehresmann, B. & Marquet, R. (2000). Biol. Chem. 275, 12306-12312.
8. Isel, C., Lanchy, J. M., Le Grice, S. F. J., Ehresmann, C., Ehresmann, B. & Marquet, R. (1996) EMBO J. 15, 917-924.
9. Isei, C., Westhof, E., Massire, C., Le Grice, S. F. J., Ehresmann, B., Ehresmann, C. & Marquet, R. (1999) EMBO J. 18, 1038-1048.
10. Kang, S. M. & Morrow, C. D. (1999) J. Virol. 73, 1818-1827.
11. Arts E. J., Stetor, S. R., Li, X., Rausch, J. W., Howard, K. J., Ehresmann, B., North, T. W., Wohrl, B. M., Goody, R. S., Wainberg, M. A. & Grice, S. F. J. (1996) Proc. Natl. Acad. Sci. USA 93, 10063-10068.
12. Huang, Y., Shalom, A., Li, Z., Wang, J., Mak, J., Wainberg, M. A. & Kleiman, L. (1996) J. Virol. 70, 4700-4706
13. Lanchy, J. M., Keith, G., Le Grice, S. F. J., Ehresmann, B., Ehresmann, C. & Marquet, R. (1998) J. Biol. Chem. 273, 24425-24432.
14. Beerens, N. & Berkhout, B. (2002) J. Virol, 76, 2329-2339.
15. Freund, F., Boulme, F., Litvak, S. & Tarrago-Litvak, L. (2001) Nucleic Acids Res. 29, 2757-2765.
16. Miller, J. T., Ehresmann, B., Hubscher, U. & Le Grice, S. F. J. (2001) J. Biol. Chem. 276, 27721-27730.
17. Morris, S., Johnson, M., Stavnezer, E. & Leis, J. (2002) J. Virol. 76, 7571-7577.
18. Friant, S., Heyman, T., Bystrom, A. S., Wilhelm, M. & Wilhelm, F. X. (1998) Mol. Cell. Biol. 18, 799-806.
19. Gabus, C., Ficheux, D., Rau, M., Keith, G., Sandmeyer, S. & Darlix, J. L. (1998) EMBO J. 17, 4873-4880.
20. Keeney, J. B., Chapman, K. B., Lauermann, V., Voytas, D. F., Astrom, S. U., von Pawel-Rammingen, U., Bystrom, A. & Boeke, J. D. (1995) Mol. Cell. Biol. 15, 217-226.
21. Mishima, Y. & Steitz, J. A. (1995) EMBO J. 14, 2679-2687.
22. Arts, E. J. Miller, J. T., Ehresmann, B. & Le Grice, S. F. J. (1998) J. Biol. Chem. 273, 14523-14532.
23. Goldschmidt, V., Rigourd, M., Ehresmann, C., Le Grice, S. F. J., Ehresmann, B. & Marquet, R. (2002) J. Biol. Chem. 277, 43233-43242.
24. Le Grice, S. F. J. & Gruninger-Leitch, F. (1990) Eur J. Biochem 187, 307-314.
25. Hargittai, M. R., Mangla, A. T., Gorelick, R. J. & Musier-Forsyth, K. (2001) J. Mol. Biol. 312, 985-997.
26. Sarafianos, S. G., Das, K., Tantillo, C., Clark, A. D., Jr., Ding, J., Whitcomb, J. M., Boyer, P. L., Hughes, S. H. & Arnold, E. (2001) EMBO J. 20, 1449-1461.
27. Jacobo-Molina, A., Clark, A. D., Jr., Williams, R. L., Nanni, R. G., Clark, P., Ferris, A. L., Hughes, S. H. & Arnold, E. (1991) Proc. Natl. Acad Sci. USA 88, 10895-10899.
28. Huang, H., Chopra, R., Verdine, G. L. & Harrison, S. C. (1998) Science 282, 1669-1675.
29. Lundblad, R. L. (1995) Techniques in Protein Modification (CRC, New York).
30. Basu, A., Tirumalai, R. S. & Modak, M. J. (1989) J. Biol. Chem. 264, 8746-8752.
31. Hanai, R. & Wang, J. C. (1994) Proc. Natl. Acad. Sci. USA 91, 11904-11908.
32. Zappacosta, F., Ingallinella, P., Scaloni, A., Pessi, A., Bianchi, E., Sollazzo, M., Tramontano, A., Marino, G. & Pucci, P. (1997) Protein Sci. 6, 1901-1909.
33. Bennett, K. L., Matthiesen, T. & Roepstorff, P. (2000) in Mass Spectrometry of Proteins and Peptides, Ed. Chapman, J. R. (Humana, Totowa, NJ), pp. 113-132.
34. Suckau, D., Mak, M. & Przybylski, M. (1992) Proc Natl. Acad. Sci. USA 89, 5630-5634.