-
1
-
-
0001468848
-
-
(Gesteland, R. F., Cech, T. R., and Atkins, J. F., Eds.), Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY
-
Burge, C. B., Tuschl, T. H., and Sharp, P. A. (1999) in RNA World II (Gesteland, R. F., Cech, T. R., and Atkins, J. F., Eds.) pp 525-560, Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY.
-
(1999)
RNA World II
, pp. 525-560
-
-
Burge, C.B.1
Tuschl, T.H.2
Sharp, P.A.3
-
2
-
-
0028556367
-
Dynamic RNA-RNA interactions in the spliceosome
-
Madhani, H. D., and Guthrie, C. (1994) Dynamic RNA-RNA interactions in the spliceosome, Annu. Rev. Genet. 28, 1-26.
-
(1994)
Annu. Rev. Genet.
, vol.28
, pp. 1-26
-
-
Madhani, H.D.1
Guthrie, C.2
-
3
-
-
0032489021
-
Mechanical devices of the spliceosome: Motors, clocks, springs, and things
-
Staley, J. P., and Guthrie, C. (1998) Mechanical devices of the spliceosome: motors, clocks, springs, and things, Cell 92, 315-326.
-
(1998)
Cell
, vol.92
, pp. 315-326
-
-
Staley, J.P.1
Guthrie, C.2
-
4
-
-
0027182114
-
Helicases: Amino acid sequence comparisons and structure-function relationships
-
Gorbalenya, A. E., and Koonin, E. V. (1993) Helicases: amino acid sequence comparisons and structure-function relationships, Curr. Opin. Struct. Biol. 3, 419-429.
-
(1993)
Curr. Opin. Struct. Biol.
, vol.3
, pp. 419-429
-
-
Gorbalenya, A.E.1
Koonin, E.V.2
-
5
-
-
0033428970
-
Helicase motifs: The engine that powers DNA unwinding
-
Hall, M. C., and Matson, S. W. (1999) Helicase motifs: the engine that powers DNA unwinding, Mol. Microbiol. 34, 867-877.
-
(1999)
Mol. Microbiol.
, vol.34
, pp. 867-877
-
-
Hall, M.C.1
Matson, S.W.2
-
6
-
-
0034857262
-
DExD/H box RNA helicases: From generic motors to specific dissociation functions
-
Tanner, N. K., and Under, P. (2001) DExD/H box RNA helicases: from generic motors to specific dissociation functions, Mol. Cell 8, 251-262.
-
(2001)
Mol. Cell
, vol.8
, pp. 251-262
-
-
Tanner, N.K.1
Under, P.2
-
7
-
-
0032562221
-
The DEAD box protein eTF4A. 2. A cycle of nucleotide and RNA-dependent conformational changes
-
Lorsch, J. R., and Herschlag, D. (1998) The DEAD box protein eTF4A. 2. A cycle of nucleotide and RNA-dependent conformational changes, Biochemistry 37, 2194-2206.
-
(1998)
Biochemistry
, vol.37
, pp. 2194-2206
-
-
Lorsch, J.R.1
Herschlag, D.2
-
8
-
-
0035147544
-
A new twist on RNA helicases: DExH/D box proteins as RNPases
-
Schwer, B. (2001) A new twist on RNA helicases: DExH/D box proteins as RNPases, Nat. Struct. Biol. 8, 113-116.
-
(2001)
Nat. Struct. Biol.
, vol.8
, pp. 113-116
-
-
Schwer, B.1
-
9
-
-
2542505377
-
Helicases become mechanistically simpler and functionally more complex
-
Von Hippel, P. H. (2004) Helicases become mechanistically simpler and functionally more complex. Nat. Struct. Mol. Biol. 11, 494-496.
-
(2004)
Nat. Struct. Mol. Biol.
, vol.11
, pp. 494-496
-
-
Von Hippel, P.H.1
-
10
-
-
0035808566
-
Active disruption of an RNA-protein interaction by a DExH/D RNA helicase
-
Jankowsky, E., Gross, C. H., Shuman, S., and Pyle, A. M. (2001) Active disruption of an RNA-protein interaction by a DExH/D RNA helicase, Science 291, 121-125.
-
(2001)
Science
, vol.291
, pp. 121-125
-
-
Jankowsky, E.1
Gross, C.H.2
Shuman, S.3
Pyle, A.M.4
-
11
-
-
2342443461
-
Protein displacement by DExH/D "RNA helicases" without duplex unwinding
-
Fairman, M. E., Maroney, P. A., Wang, W., Bowers, H. A., Gollnick, P., Nilsen, T. W., and Jankowsky, E. (2004) Protein displacement by DExH/D "RNA helicases" without duplex unwinding, Science 30, 730-734.
-
(2004)
Science
, vol.30
, pp. 730-734
-
-
Fairman, M.E.1
Maroney, P.A.2
Wang, W.3
Bowers, H.A.4
Gollnick, P.5
Nilsen, T.W.6
Jankowsky, E.7
-
12
-
-
0035177309
-
Deletion of MUD2, the yeast homologue of U2AF65, can bypass the requirement for Sub2, an essential spliceosomal ATPase
-
Kistler, A. L., and Guthrie, C. (2001) Deletion of MUD2, the yeast homologue of U2AF65, can bypass the requirement for Sub2, an essential spliceosomal ATPase, Genes Dev. 15, 42-49.
-
(2001)
Genes Dev.
, vol.15
, pp. 42-49
-
-
Kistler, A.L.1
Guthrie, C.2
-
13
-
-
0035105921
-
Specific alterations of U1-C protein or U1 small nuclear RNA can eliminate the requirement of Prp28, an essential DEAD box splicing factor
-
Chen, J. Y.-F., Stands, L., Staley, J. P., Jackups R. R., Jr., Latus, L. J., and Chang T.-H. (2001) Specific alterations of U1-C protein or U1 small nuclear RNA can eliminate the requirement of Prp28, an essential DEAD box splicing factor, Mol. Cell 7, 227-232.
-
(2001)
Mol. Cell
, vol.7
, pp. 227-232
-
-
Chen, J.Y.-F.1
Stands, L.2
Staley, J.P.3
Jackups Jr., R.R.4
Latus, L.J.5
Chang, T.-H.6
-
14
-
-
0026088747
-
Requirement of the RNA helicase-like protein PRP22 for release of messenger RNA from spliceosomes
-
Company, M., Arenas, J., and Abelson, J. (1991) Requirement of the RNA helicase-like protein PRP22 for release of messenger RNA from spliceosomes, Nature 349, 487-493.
-
(1991)
Nature
, vol.349
, pp. 487-493
-
-
Company, M.1
Arenas, J.2
Abelson, J.3
-
15
-
-
0032055765
-
Prp22, an RNA-dependent ATPase, plays two distinct roles in yeast pre-mRNA splicing
-
Schwer, B., and Gross, C. H. (1998) Prp22, an RNA-dependent ATPase, plays two distinct roles in yeast pre-mRNA splicing, EMBO J. 17, 2086-2094.
-
(1998)
EMBO J.
, vol.17
, pp. 2086-2094
-
-
Schwer, B.1
Gross, C.H.2
-
16
-
-
0032525149
-
The DEAH-box PRP22 is an ATPase that mediates ATP-dependent release from spliceosomes and unwinds RNA duplexes
-
Wagner, J. D. O., Jankowsky, E., Company, M., Pyle, A. M., and Abelson, J. N. (1998) The DEAH-box PRP22 is an ATPase that mediates ATP-dependent release from spliceosomes and unwinds RNA duplexes, EMBO J. 17, 2926-2937.
-
(1998)
EMBO J.
, vol.17
, pp. 2926-2937
-
-
Wagner, J.D.O.1
Jankowsky, E.2
Company, M.3
Pyle, A.M.4
Abelson, J.N.5
-
17
-
-
0034423411
-
RNA helicase dynamics in pre-mRNA splicing
-
Schwer, B., and Meszaros, T. (2000) RNA helicase dynamics in pre-mRNA splicing, EMBO J. 19, 6582-6591.
-
(2000)
EMBO J.
, vol.19
, pp. 6582-6591
-
-
Schwer, B.1
Meszaros, T.2
-
18
-
-
0037013212
-
Characterization of dominant-negative mutants of the DEAH-box splicing factors Prp22 and Prp16
-
Schneider, S., Hotz, H. R., and Schwer, B. (2002) Characterization of dominant-negative mutants of the DEAH-box splicing factors Prp22 and Prp16, J. Biol. Chem. 277, 15452-15458.
-
(2002)
J. Biol. Chem.
, vol.277
, pp. 15452-15458
-
-
Schneider, S.1
Hotz, H.R.2
Schwer, B.3
-
19
-
-
1542275531
-
Motifs IV and V in the DEAH box splicing factor Prp22 are important for RNA unwinding, and helicase-defective Prp22 mutants are suppressed by Prp8
-
Schneider, S., Campodonico, E., and Schwer, B. (2004) Motifs IV and V in the DEAH box splicing factor Prp22 are important for RNA unwinding, and helicase-defective Prp22 mutants are suppressed by Prp8, J. Biol. Chem. 279, 8617-8626.
-
(2004)
J. Biol. Chem.
, vol.279
, pp. 8617-8626
-
-
Schneider, S.1
Campodonico, E.2
Schwer, B.3
-
20
-
-
0036188450
-
ATP-dependent remodeling of the spliceosome: Intragenic suppressors of release-defective mutants of Saccharomyces cerevisiae Prp22
-
Campodonico, E., and Schwer, B. (2002) ATP-dependent remodeling of the spliceosome: Intragenic suppressors of release-defective mutants of Saccharomyces cerevisiae Prp22, Genetics 160, 407-415.
-
(2002)
Genetics
, vol.160
, pp. 407-415
-
-
Campodonico, E.1
Schwer, B.2
-
21
-
-
0027172789
-
A double-filter method for nitrocellulose-filter binding: Application to protein-nucleic acid interactions
-
Wong, I., and Lohman, T. M. (1993) A double-filter method for nitrocellulose-filter binding: application to protein-nucleic acid interactions, Proc. Natl. Acad. Sci. U.S.A. 90, 5428-5432.
-
(1993)
Proc. Natl. Acad. Sci. U.S.A.
, vol.90
, pp. 5428-5432
-
-
Wong, I.1
Lohman, T.M.2
-
22
-
-
0026726096
-
A new RNA helicase isolated from HeLa cells that catalytically translocates in the 3′ to 5′ direction
-
Lee, C. G., and Hurwitz, J. (1992) A new RNA helicase isolated from HeLa cells that catalytically translocates in the 3′ to 5′ direction, J. Biol. Chem. 267, 4398-4407.
-
(1992)
J. Biol. Chem.
, vol.267
, pp. 4398-4407
-
-
Lee, C.G.1
Hurwitz, J.2
-
23
-
-
0000075467
-
Improved free-energy parameters for predictions of RNA duplex stability
-
Freier, S. M., Kierzek, R., Jaeger, J. A., Sugimoto, N., Caruthers, M. H., Neilson, T., and Turner, D. H. (1986) Improved free-energy parameters for predictions of RNA duplex stability, Proc. Natl. Acad. Sci. U.S.A. 83, 9373-9377.
-
(1986)
Proc. Natl. Acad. Sci. U.S.A.
, vol.83
, pp. 9373-9377
-
-
Freier, S.M.1
Kierzek, R.2
Jaeger, J.A.3
Sugimoto, N.4
Caruthers, M.H.5
Neilson, T.6
Turner, D.H.7
-
24
-
-
0029134549
-
Thermodynamic parameters to predict stability of RNA/DNA hybrid duplexes
-
Sugimoto, N., Nakano, S., Katoh, M., Matsumura, A., Nakamuta, H., Ohmichi, T., Yoneyama, M., and Sasaki, M. (1995) Thermodynamic parameters to predict stability of RNA/DNA hybrid duplexes, Biochemistry 34, 11211-11216.
-
(1995)
Biochemistry
, vol.34
, pp. 11211-11216
-
-
Sugimoto, N.1
Nakano, S.2
Katoh, M.3
Matsumura, A.4
Nakamuta, H.5
Ohmichi, T.6
Yoneyama, M.7
Sasaki, M.8
-
25
-
-
0029859713
-
Improved thermodynamic parameters and helix initiation factor to predict stability of DNA duplexes
-
Sugimoto, N., Nakano, S., Yoneyama, M., and Honda, K. (1996) Improved thermodynamic parameters and helix initiation factor to predict stability of DNA duplexes, Nucleic Acids Res. 24, 4501-4505.
-
(1996)
Nucleic Acids Res.
, vol.24
, pp. 4501-4505
-
-
Sugimoto, N.1
Nakano, S.2
Yoneyama, M.3
Honda, K.4
-
26
-
-
0035877630
-
Functional domains of the yeast splicing factor Prp22p
-
Schneider, S., and Schwer, B. (2001) Functional domains of the yeast splicing factor Prp22p, J. Biol. Chem. 276, 21184-21191.
-
(2001)
J. Biol. Chem.
, vol.276
, pp. 21184-21191
-
-
Schneider, S.1
Schwer, B.2
-
27
-
-
0026535919
-
The purified yeast pre-mRNA splicing factor PRP2 is an RNA-dependent NTPase
-
Kim, S. H., Smith, J., Claude, A., and Lin, R. J. (1992) The purified yeast pre-mRNA splicing factor PRP2 is an RNA-dependent NTPase, EMBO J. 11, 2319-2326.
-
(1992)
EMBO J.
, vol.11
, pp. 2319-2326
-
-
Kim, S.H.1
Smith, J.2
Claude, A.3
Lin, R.J.4
-
28
-
-
0027065506
-
A conformational rearrangement in the spliceosome is dependent on PRP16 and ATP hydrolysis
-
Schwer, B., and Guthrie, C. (1992) A conformational rearrangement in the spliceosome is dependent on PRP16 and ATP hydrolysis, EMBO J. 11, 5033-5039.
-
(1992)
EMBO J.
, vol.11
, pp. 5033-5039
-
-
Schwer, B.1
Guthrie, C.2
-
29
-
-
0032499075
-
The DEAH-box splicing factor Prp16 unwinds RNA duplexes in vitro
-
Wang, Y., Wagner, J. D., and Guthrie, C. (1998) The DEAH-box splicing factor Prp16 unwinds RNA duplexes in vitro, Curr. Biol. 8, 441-451.
-
(1998)
Curr. Biol.
, vol.8
, pp. 441-451
-
-
Wang, Y.1
Wagner, J.D.2
Guthrie, C.3
-
30
-
-
0026490908
-
Vaccinia virus RNA helicase: An essential enzyme related to the DE-H family of RNA-dependent NTPases
-
Shuman, S. (1992) Vaccinia virus RNA helicase: an essential enzyme related to the DE-H family of RNA-dependent NTPases, Proc. Natl. Acad. Sci. U.S.A. 89, 10935-10939.
-
(1992)
Proc. Natl. Acad. Sci. U.S.A.
, vol.89
, pp. 10935-10939
-
-
Shuman, S.1
-
31
-
-
0033030027
-
Characterization and mutational analysis of the helicase and NTPase activities of hepatitis C virus full-length NS3 protein
-
Wardell, A. D., Errington, W., Ciaramella, G., Merson, J., and McGarvey, M. J. (1999) Characterization and mutational analysis of the helicase and NTPase activities of hepatitis C virus full-length NS3 protein, J. Gen. Virol. 80, 701-709.
-
(1999)
J. Gen. Virol.
, vol.80
, pp. 701-709
-
-
Wardell, A.D.1
Errington, W.2
Ciaramella, G.3
Merson, J.4
McGarvey, M.J.5
-
32
-
-
0026655912
-
Substrate specificity of the Rad3 ATPase/DNA helicase of Saccharomyces cerevisiae and binding of Rad3 protein to nucleic acids
-
Naegeli, H., Bardwell, L., Harosh, I., and Friedberg, E. C. (1992) Substrate specificity of the Rad3 ATPase/DNA helicase of Saccharomyces cerevisiae and binding of Rad3 protein to nucleic acids, J. Biol. Chem. 267, 7839-7844.
-
(1992)
J. Biol. Chem.
, vol.267
, pp. 7839-7844
-
-
Naegeli, H.1
Bardwell, L.2
Harosh, I.3
Friedberg, E.C.4
-
33
-
-
0032515969
-
The human U5-200kD DEXH-box protein unwinds U4/U6 RNA duplices in vitro
-
Laggerbauer, B., Achsel, T., and Lührmann, R. (1998) The human U5-200kD DEXH-box protein unwinds U4/U6 RNA duplices in vitro, Proc. Natl. Acad. Sci. U.S.A. 95, 4188-4192.
-
(1998)
Proc. Natl. Acad. Sci. U.S.A.
, vol.95
, pp. 4188-4192
-
-
Laggerbauer, B.1
Achsel, T.2
Lührmann, R.3
-
34
-
-
0030583249
-
Characterization of RNA binding activity and RNA helicase activity of the hepatitis C virus NS3 protein
-
Gwack, Y., Kim, D. W., Han, J. H., and Choe, J. (1996) Characterization of RNA binding activity and RNA helicase activity of the hepatitis C virus NS3 protein, Biochem. Biophys. Res. Commun. 225, 654-659.
-
(1996)
Biochem. Biophys. Res. Commun.
, vol.225
, pp. 654-659
-
-
Gwack, Y.1
Kim, D.W.2
Han, J.H.3
Choe, J.4
-
35
-
-
0029784485
-
A steady-state and pre-steady-state kinetic analysis of the NTPase activity associated with the hepatitis C virus NS3 helicase domain
-
Preugshat, F., Averett, D. R., Clarke, B. E., and Porter, D. J. T. (1996) A steady-state and pre-steady-state kinetic analysis of the NTPase activity associated with the hepatitis C virus NS3 helicase domain, J. Biol. Chem. 271, 24449-24457.
-
(1996)
J. Biol. Chem.
, vol.271
, pp. 24449-24457
-
-
Preugshat, F.1
Averett, D.R.2
Clarke, B.E.3
Porter, D.J.T.4
-
36
-
-
0029917572
-
Vaccinia virus RNA helicase: Nucleic acid specificity in duplex unwinding
-
Gross, C. H., and Shuman, S. (1996) Vaccinia virus RNA helicase: nucleic acid specificity in duplex unwinding, J. Virol. 70, 2615-2619.
-
(1996)
J. Virol.
, vol.70
, pp. 2615-2619
-
-
Gross, C.H.1
Shuman, S.2
-
37
-
-
0027241018
-
Vaccinia virus RNA helicase: Directionality and substrate specificity
-
Shuman, S. (1993) Vaccinia virus RNA helicase: Directionality and substrate specificity, J. Biol. Chem. 268, 11798-11802.
-
(1993)
J. Biol. Chem.
, vol.268
, pp. 11798-11802
-
-
Shuman, S.1
-
38
-
-
0029970903
-
The helicase activity associated with hepatitis C virus nonstructural protein 3 (NS3)
-
Tai, C. L., Chi, W. K., Chen, D. S., and Hwang, L. H. (1996) The helicase activity associated with hepatitis C virus nonstructural protein 3 (NS3), J. Virol. 70, 8477-8484.
-
(1996)
J. Virol.
, vol.70
, pp. 8477-8484
-
-
Tai, C.L.1
Chi, W.K.2
Chen, D.S.3
Hwang, L.H.4
-
39
-
-
0032518490
-
Hepatitis C virus NS3 RNA helicase domain with a bound oligonucleotide: The crystal structure provides insights into the mode of unwinding
-
Kim, J. L., Morgenstern, K. A., Griffith, J. P., Dwyer, M. D., Thomson, J. A., Murcko, M. A., Lin, C., and Caron, P. R. (1998) Hepatitis C virus NS3 RNA helicase domain with a bound oligonucleotide: the crystal structure provides insights into the mode of unwinding, Structure 6, 89-100.
-
(1998)
Structure
, vol.6
, pp. 89-100
-
-
Kim, J.L.1
Morgenstern, K.A.2
Griffith, J.P.3
Dwyer, M.D.4
Thomson, J.A.5
Murcko, M.A.6
Lin, C.7
Caron, P.R.8
-
40
-
-
0029893874
-
Mechanisms of helicase-catalyzed DNA unwinding
-
Lohman, T. M., and Bjornson, K. P. (1996) Mechanisms of helicase-catalyzed DNA unwinding, Annu. Rev. Biochem. 65, 169-214.
-
(1996)
Annu. Rev. Biochem.
, vol.65
, pp. 169-214
-
-
Lohman, T.M.1
Bjornson, K.P.2
-
41
-
-
0036500976
-
The hepatitis C viral NS3 protein is a processive DNA helicase with cofactor enhanced RNA unwinding
-
Pang, P. S., Jankowsky, E., Planet, P. J., and Pyle, A. M. (2002) The hepatitis C viral NS3 protein is a processive DNA helicase with cofactor enhanced RNA unwinding, EMBO J. 21, 1168-1176.
-
(2002)
EMBO J.
, vol.21
, pp. 1168-1176
-
-
Pang, P.S.1
Jankowsky, E.2
Planet, P.J.3
Pyle, A.M.4
-
42
-
-
13844321756
-
Choosing between DNA and RNA: The polymer specificity of RNA helicase NPH-II
-
Kawaoka, J., and Pyle, A. M. (2005) Choosing between DNA and RNA: the polymer specificity of RNA helicase NPH-II, Nucleic Acids Res. 33, 644-649.
-
(2005)
Nucleic Acids Res.
, vol.33
, pp. 644-649
-
-
Kawaoka, J.1
Pyle, A.M.2
-
43
-
-
0034719392
-
The DExH protein NPH-II is a processive and directional motor for unwinding RNA
-
Jankowsky, E., Gross, C. H., Shuman, S., and Pyle, A. M. (2000) The DExH protein NPH-II is a processive and directional motor for unwinding RNA, Nature 403, 447-451.
-
(2000)
Nature
, vol.403
, pp. 447-451
-
-
Jankowsky, E.1
Gross, C.H.2
Shuman, S.3
Pyle, A.M.4
-
44
-
-
0030826730
-
The role of U5 snRNP in pre-mRNA splicing
-
Newman, A. J. (1997) The role of U5 snRNP in pre-mRNA splicing, EMBO J. 16, 5797-5800.
-
(1997)
EMBO J.
, vol.16
, pp. 5797-5800
-
-
Newman, A.J.1
-
45
-
-
0029031713
-
Extensive interactions of PRP8 protein with the 5′ and 3′ splice sites during splicing suggest a role in stabilization of exon alignment by U5 snRNA
-
Teigelkamp, S., Newman, A. J., and Beggs, J. D. (1995) Extensive interactions of PRP8 protein with the 5′ and 3′ splice sites during splicing suggest a role in stabilization of exon alignment by U5 snRNA, EMBO J. 14, 2602-2612.
-
(1995)
EMBO J.
, vol.14
, pp. 2602-2612
-
-
Teigelkamp, S.1
Newman, A.J.2
Beggs, J.D.3
|