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Volumn 351, Issue 1, 2005, Pages 89-99

Forced unraveling of nucleosomes assembled on heterogeneous DNA using core histones, NAP-1, and ACF

Author keywords

ACF; Chromatin assembly; Chromatin structure; Histones; Nucleosomes

Indexed keywords

ATP DEPENDENT CHROMATIN ASSEMBLY AND REMODELLING FACTOR; CHAPERONE; DNA; HISTONE; NUCLEAR PROTEIN; NUCLEOSOME ASSEMBLY PROTEIN 1; UNCLASSIFIED DRUG;

EID: 22044436367     PISSN: 00222836     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.jmb.2005.05.058     Document Type: Article
Times cited : (63)

References (50)
  • 2
    • 1842411320 scopus 로고    scopus 로고
    • Crystal structure of the nucleosome core particle at 2.8 Å resolution
    • K. Luger, A.W. Mader, R.K. Richmond, D.F. Sargent, and T.J. Richmond Crystal structure of the nucleosome core particle at 2.8 Å resolution Nature 389 1997 251 260
    • (1997) Nature , vol.389 , pp. 251-260
    • Luger, K.1    Mader, A.W.2    Richmond, R.K.3    Sargent, D.F.4    Richmond, T.J.5
  • 4
    • 0035704707 scopus 로고    scopus 로고
    • Role of DNA sequence in nucleosome stability and dynamics
    • J. Widom Role of DNA sequence in nucleosome stability and dynamics Quart. Rev. Biophys. 34 2001 269 324
    • (2001) Quart. Rev. Biophys. , vol.34 , pp. 269-324
    • Widom, J.1
  • 5
    • 0344198456 scopus 로고    scopus 로고
    • Chromatin remodeling by ATP-dependent molecular machines
    • A. Lusser, and J.T. Kadonaga Chromatin remodeling by ATP-dependent molecular machines Bioessays 25 2003 1192 1200
    • (2003) Bioessays , vol.25 , pp. 1192-1200
    • Lusser, A.1    Kadonaga, J.T.2
  • 6
    • 0035815105 scopus 로고    scopus 로고
    • Effects of histone acetylation on the equilibrium accessibility of nucleosomal DNA target sites
    • J.D. Anderson, P.T. Lowary, and J. Widom Effects of histone acetylation on the equilibrium accessibility of nucleosomal DNA target sites J. Mol. Biol. 307 2001 977 985
    • (2001) J. Mol. Biol. , vol.307 , pp. 977-985
    • Anderson, J.D.1    Lowary, P.T.2    Widom, J.3
  • 8
    • 0034594940 scopus 로고    scopus 로고
    • Single-molecule studies of the effect of template tension on T7 DNA polymerase activity
    • G.J. Wuite, S.B. Smith, M. Young, D. Keller, and C. Bustamante Single-molecule studies of the effect of template tension on T7 DNA polymerase activity Nature 404 2000 103 106
    • (2000) Nature , vol.404 , pp. 103-106
    • Wuite, G.J.1    Smith, S.B.2    Young, M.3    Keller, D.4    Bustamante, C.5
  • 9
    • 0034710990 scopus 로고    scopus 로고
    • Replication by a single DNA polymerase of a stretched single-stranded DNA
    • B. Maier, D. Bensimon, and V. Croquette Replication by a single DNA polymerase of a stretched single-stranded DNA Proc. Natl Acad. Sci. USA 97 2000 12002 12007
    • (2000) Proc. Natl Acad. Sci. USA , vol.97 , pp. 12002-12007
    • Maier, B.1    Bensimon, D.2    Croquette, V.3
  • 10
    • 0034602688 scopus 로고    scopus 로고
    • Pulling a single chromatin fiber reveals the forces that maintain its higher-order structure
    • Y. Cui, and C. Bustamante Pulling a single chromatin fiber reveals the forces that maintain its higher-order structure Proc. Natl Acad. Sci. USA 97 2000 127 132
    • (2000) Proc. Natl Acad. Sci. USA , vol.97 , pp. 127-132
    • Cui, Y.1    Bustamante, C.2
  • 11
    • 0034687787 scopus 로고    scopus 로고
    • Fast kinetics of chromatin assembly revealed by single-molecule videomicroscopy and scanning force microscopy
    • B. Ladoux, J.P. Quivy, P. Doyle, O. du Roure, G. Almouzni, and J.L. Viovy Fast kinetics of chromatin assembly revealed by single-molecule videomicroscopy and scanning force microscopy Proc. Natl Acad. Sci. USA 97 2000 14251 14256
    • (2000) Proc. Natl Acad. Sci. USA , vol.97 , pp. 14251-14256
    • Ladoux, B.1    Quivy, J.P.2    Doyle, P.3    Du Roure, O.4    Almouzni, G.5    Viovy, J.L.6
  • 13
    • 0037458039 scopus 로고    scopus 로고
    • Assembly of single chromatin fibers depends on the tension in the DNA molecule: Magnetic tweezers study
    • S.H. Leuba, M.A. Karymov, M. Tomschik, R. Ramjit, P. Smith, and J. Zlatanova Assembly of single chromatin fibers depends on the tension in the DNA molecule: magnetic tweezers study Proc. Natl Acad. Sci. USA 100 2003 495 500
    • (2003) Proc. Natl Acad. Sci. USA , vol.100 , pp. 495-500
    • Leuba, S.H.1    Karymov, M.A.2    Tomschik, M.3    Ramjit, R.4    Smith, P.5    Zlatanova, J.6
  • 15
    • 0022234831 scopus 로고
    • Chromatin reconstituted from tandemly repeated cloned DNA fragments and core histones: A model system for study of higher order structure
    • R.T. Simpson, F. Thoma, and J.M. Brubaker Chromatin reconstituted from tandemly repeated cloned DNA fragments and core histones: a model system for study of higher order structure Cell 42 1985 799 808
    • (1985) Cell , vol.42 , pp. 799-808
    • Simpson, R.T.1    Thoma, F.2    Brubaker, J.M.3
  • 17
    • 0031444148 scopus 로고    scopus 로고
    • ACF, an ISWI-containing and ATP-utilizing chromatin assembly and remodeling factor
    • T. Ito, M. Bulger, M.J. Pazin, R. Kobayashi, and J.T. Kadonaga ACF, an ISWI-containing and ATP-utilizing chromatin assembly and remodeling factor Cell 90 1997 145 155
    • (1997) Cell , vol.90 , pp. 145-155
    • Ito, T.1    Bulger, M.2    Pazin, M.J.3    Kobayashi, R.4    Kadonaga, J.T.5
  • 18
    • 0348166012 scopus 로고    scopus 로고
    • Chromatin assembly in vitro with purified recombinant ACF and NAP-1
    • D.V. Fyodorov, and J.T. Kadonaga Chromatin assembly in vitro with purified recombinant ACF and NAP-1 Methods Enzymol. 371 2003 499 515
    • (2003) Methods Enzymol. , vol.371 , pp. 499-515
    • Fyodorov, D.V.1    Kadonaga, J.T.2
  • 20
    • 18744373022 scopus 로고    scopus 로고
    • Strategies for the reconstitution of chromatin
    • A. Lusser, and J.T. Kadonaga Strategies for the reconstitution of chromatin Nature Methods 1 2004 19 26
    • (2004) Nature Methods , vol.1 , pp. 19-26
    • Lusser, A.1    Kadonaga, J.T.2
  • 21
    • 0037158744 scopus 로고    scopus 로고
    • Dynamics of ATP-dependent chromatin assembly by ACF
    • D.V. Fyodorov, and J.T. Kadonaga Dynamics of ATP-dependent chromatin assembly by ACF Nature 418 2002 897 900
    • (2002) Nature , vol.418 , pp. 897-900
    • Fyodorov, D.V.1    Kadonaga, J.T.2
  • 22
    • 0036829783 scopus 로고    scopus 로고
    • Strand pairing by Rad54 and Rad51 is enhanced by chromatin
    • V. Alexiadis, and J.T. Kadonaga Strand pairing by Rad54 and Rad51 is enhanced by chromatin Genes Dev. 16 2002 2767 2771
    • (2002) Genes Dev. , vol.16 , pp. 2767-2771
    • Alexiadis, V.1    Kadonaga, J.T.2
  • 23
    • 0034704142 scopus 로고    scopus 로고
    • Transcriptional analysis of chromatin assembled with purified ACF and dNAP1 reveals that acetyl-CoA is required for preinitiation complex assembly
    • W. Jiang, S.K. Nordeen, and J.T. Kadonaga Transcriptional analysis of chromatin assembled with purified ACF and dNAP1 reveals that acetyl-CoA is required for preinitiation complex assembly J. Biol. Chem. 275 2000 39819 39822
    • (2000) J. Biol. Chem. , vol.275 , pp. 39819-39822
    • Jiang, W.1    Nordeen, S.K.2    Kadonaga, J.T.3
  • 24
    • 0035901558 scopus 로고    scopus 로고
    • ATP-dependent chromatin remodeling facilitates nucleotide excision repair of UV-induced DNA lesions in synthetic dinucleosomes
    • K. Ura, M. Araki, H. Saeki, C. Masutani, T. Ito, and S. Iwai ATP-dependent chromatin remodeling facilitates nucleotide excision repair of UV-induced DNA lesions in synthetic dinucleosomes EMBO J. 20 2001 2004 2014
    • (2001) EMBO J. , vol.20 , pp. 2004-2014
    • Ura, K.1    Araki, M.2    Saeki, H.3    Masutani, C.4    Ito, T.5    Iwai, S.6
  • 25
    • 0025232290 scopus 로고
    • Spatial and temporal patterns of E74 transcription during Drosophila development
    • C.S. Thummel, K.C. Burtis, and D.S. Hogness Spatial and temporal patterns of E74 transcription during Drosophila development Cell 61 1990 101 111
    • (1990) Cell , vol.61 , pp. 101-111
    • Thummel, C.S.1    Burtis, K.C.2    Hogness, D.S.3
  • 26
    • 0021268344 scopus 로고
    • Early events in the stimulation of mammary tumor virus RNA synthesis by glucocorticoids. Novel assays of transcription rates
    • D.S. Ucker, and K.R. Yamamoto Early events in the stimulation of mammary tumor virus RNA synthesis by glucocorticoids. Novel assays of transcription rates J. Biol. Chem. 259 1984 7416 7420
    • (1984) J. Biol. Chem. , vol.259 , pp. 7416-7420
    • Ucker, D.S.1    Yamamoto, K.R.2
  • 28
    • 0030024985 scopus 로고    scopus 로고
    • Overstretching B-DNA: The elastic response of individual double-stranded and single-stranded DNA molecules
    • S.B. Smith, Y. Cui, and C. Bustamante Overstretching B-DNA: the elastic response of individual double-stranded and single-stranded DNA molecules Science 271 1996 795 799
    • (1996) Science , vol.271 , pp. 795-799
    • Smith, S.B.1    Cui, Y.2    Bustamante, C.3
  • 29
    • 12344284012 scopus 로고    scopus 로고
    • Specific contributions of histone tails and their acetylation to the mechanical stability of nucleosomes
    • B. Brower-Toland, D.A. Wacker, R.M. Fulbright, J.T. Lis, W.L. Kraus, and M.D. Wang Specific contributions of histone tails and their acetylation to the mechanical stability of nucleosomes J. Mol. Biol. 346 2005 135 146
    • (2005) J. Mol. Biol. , vol.346 , pp. 135-146
    • Brower-Toland, B.1    Wacker, D.A.2    Fulbright, R.M.3    Lis, J.T.4    Kraus, W.L.5    Wang, M.D.6
  • 30
    • 17844364466 scopus 로고    scopus 로고
    • Single chromatin fibre stretching reveals physically distinct populations of disassembly events
    • Pope, L. H., Bennink, M. L., van Leijenhorst-Groener, K. A., Nikova, D., Greve, J., & Marko, J. (2005). Single chromatin fibre stretching reveals physically distinct populations of disassembly events. Biophys. J. 88, 3572-3583.
    • (2005) Biophys. J. , vol.88 , pp. 3572-3583
    • Pope, L.H.1    Bennink, M.L.2    Van Leijenhorst-Groener, K.A.3    Nikova, D.4    Greve, J.5    Marko, J.6
  • 31
    • 0030867320 scopus 로고    scopus 로고
    • Driving proteins off DNA using applied tension
    • J.F. Marko, and E.D. Siggia Driving proteins off DNA using applied tension Biophys. J. 73 1997 2173 2178
    • (1997) Biophys. J. , vol.73 , pp. 2173-2178
    • Marko, J.F.1    Siggia, E.D.2
  • 32
    • 33751156715 scopus 로고
    • Stiff chains and filaments under tension
    • T. Odijk Stiff chains and filaments under tension Macromolecules 28 1995 7016 7018
    • (1995) Macromolecules , vol.28 , pp. 7016-7018
    • Odijk, T.1
  • 36
    • 0034979287 scopus 로고    scopus 로고
    • Probing the relation between force-lifetime-and chemistry in single molecular bonds
    • E. Evans Probing the relation between force-lifetime-and chemistry in single molecular bonds Annu. Rev. Biophys. Biomol. Struct. 30 2001 105 128
    • (2001) Annu. Rev. Biophys. Biomol. Struct. , vol.30 , pp. 105-128
    • Evans, E.1
  • 37
    • 0028822426 scopus 로고
    • 2 and KCl concentration, the histone tails, and temperature
    • 2 and KCl concentration, the histone tails, and temperature J. Biol. Chem. 270 1995 27399 27402
    • (1995) J. Biol. Chem. , vol.270 , pp. 27399-27402
    • Godde, J.S.1    Wolffe, A.P.2
  • 38
    • 0037143629 scopus 로고    scopus 로고
    • DNA-dependent divalent cation binding in the nucleosome core particle
    • C.A. Davey, and T.J. Richmond DNA-dependent divalent cation binding in the nucleosome core particle Proc. Natl Acad. Sci. USA 99 2002 11169 11174
    • (2002) Proc. Natl Acad. Sci. USA , vol.99 , pp. 11169-11174
    • Davey, C.A.1    Richmond, T.J.2
  • 40
    • 0019887183 scopus 로고
    • Nucleosome dissociation at physiological ionic strengths
    • R.W. Cotton, and B.A. Hamkalo Nucleosome dissociation at physiological ionic strengths Nucl. Acids Res. 9 1981 445 457
    • (1981) Nucl. Acids Res. , vol.9 , pp. 445-457
    • Cotton, R.W.1    Hamkalo, B.A.2
  • 41
    • 0018590303 scopus 로고
    • Structure and function of chromatin
    • D.M. Lilley, and J.F. Pardon Structure and function of chromatin Annu. Rev. Genet. 13 1979 197 233
    • (1979) Annu. Rev. Genet. , vol.13 , pp. 197-233
    • Lilley, D.M.1    Pardon, J.F.2
  • 42
    • 1642576264 scopus 로고    scopus 로고
    • Histone-DNA binding free energy cannot be measured in dilution-driven dissociation experiments
    • A. Thastrom, J.M. Gottesfeld, K. Luger, and J. Widom Histone-DNA binding free energy cannot be measured in dilution-driven dissociation experiments Biochemistry 43 2004 736 741
    • (2004) Biochemistry , vol.43 , pp. 736-741
    • Thastrom, A.1    Gottesfeld, J.M.2    Luger, K.3    Widom, J.4
  • 43
    • 0033287979 scopus 로고    scopus 로고
    • Equilibrium and dynamic nucleosome stability
    • J. Widom Equilibrium and dynamic nucleosome stability Methods Mol. Biol. 119 1999 61 77
    • (1999) Methods Mol. Biol. , vol.119 , pp. 61-77
    • Widom, J.1
  • 44
    • 0018801335 scopus 로고
    • The nature of the interaction of nucleosomes with a eukaryotic RNA polymerase II
    • D.M. Lilley, M.F. Jacobs, and M. Houghton The nature of the interaction of nucleosomes with a eukaryotic RNA polymerase II Nucl. Acids Res. 7 1979 377 399
    • (1979) Nucl. Acids Res. , vol.7 , pp. 377-399
    • Lilley, D.M.1    Jacobs, M.F.2    Houghton, M.3
  • 45
    • 0021352605 scopus 로고
    • Dynamics and equilibria of nucleosomes at elevated ionic strength
    • T.D. Yager, and K.E. van Holde Dynamics and equilibria of nucleosomes at elevated ionic strength J. Biol. Chem. 259 1984 4212 4222
    • (1984) J. Biol. Chem. , vol.259 , pp. 4212-4222
    • Yager, T.D.1    Van Holde, K.E.2
  • 46
    • 0024537375 scopus 로고
    • Salt-induced release of DNA from nucleosome core particles
    • T.D. Yager, C.T. McMurray, and K.E. van Holde Salt-induced release of DNA from nucleosome core particles Biochemistry 28 1989 2271 2281
    • (1989) Biochemistry , vol.28 , pp. 2271-2281
    • Yager, T.D.1    McMurray, C.T.2    Van Holde, K.E.3
  • 47
    • 21244444606 scopus 로고    scopus 로고
    • Histone octamer instability under single molecule experiment conditions
    • C. Claudet, D. Angelov, P. Bouvet, S. Dimitrov, and J. Bednar Histone octamer instability under single molecule experiment conditions J. Biol. Chem. 280 2005 19958 19965
    • (2005) J. Biol. Chem. , vol.280 , pp. 19958-19965
    • Claudet, C.1    Angelov, D.2    Bouvet, P.3    Dimitrov, S.4    Bednar, J.5
  • 48
    • 0028850059 scopus 로고
    • Overcoming a nucleosomal barrier to transcription
    • V.M. Studitsky, D.J. Clark, and G. Felsenfeld Overcoming a nucleosomal barrier to transcription Cell 83 1995 19 27
    • (1995) Cell , vol.83 , pp. 19-27
    • Studitsky, V.M.1    Clark, D.J.2    Felsenfeld, G.3


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