Dynamics of ATP-dependent chromatin assembly by ACF

Nature

Volumn 418, Issue 6900, 2002, Pages 896-900

  Fyodorov, Dmitry V ^a   Kadonaga, James T ^a  

^a UNIVERSITY OF CALIFORNIA   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

DNA; GENES; HYDROLYSIS; PURIFICATION;

CHROMATIC ASSEMBLY; PERIODIC NUCLEOSOME ARRAYS;

ENZYMES;

ADENOSINE TRIPHOSPHATE; HELICASE; PLASMID DNA;

DNA;

ARTICLE; BASE PAIRING; CHROMATIN STRUCTURE; CONTROLLED STUDY; HYDROLYSIS; MOLECULAR DYNAMICS; NONHUMAN; NUCLEOSOME; PRIORITY JOURNAL; PROTEIN ASSEMBLY; PROTEIN FUNCTION; PROTEIN PURIFICATION;

ADENOSINE TRIPHOSPHATE; CELL CYCLE PROTEINS; CHROMATIN; CHROMOSOMAL PROTEINS, NON-HISTONE; DNA HELICASES; DNA, SUPERHELICAL; DNA-BINDING PROTEINS; HISTONES; HYDROLYSIS; MOLECULAR CONFORMATION; NUCLEAR PROTEINS; NUCLEOSOMES; PLASMIDS; PROTEIN SUBUNITS; PROTEINS; TEMPLATES, GENETIC; TIME FACTORS;

EUKARYOTA;

EID: 0037158744     PISSN: 00280836     EISSN: None     Source Type: Journal    
DOI: 10.1038/nature00929     Document Type: Article

References (28)

1. Tsukiyama, T. and Wu, C. Chromatin remodeling and transcription. Opin. Genet. Dev. 7, 182-191 (1997).
2. Cairns, B. R. Chromatin remodeling machines: similar motors, ulterior motives. TrendsBiochem. Sci. 23, 20-25 (1998).
3. Kornberg, R. D. and Lorch, Y. Chromatin-modifying and -remodeling complexes. Curr. Opin. Genet. Dev. 9, 148-151 (1999).
4. Kingston, R. E. and Narlikar, G. J. ATP-dependent remodeling and acetylation as regulators of chromatin fluidity. GenesDev. 13, 2339-2352 (1999).
5. Fyodorov, D. V. and Kadonaga, J. T. The many faces of chromatin remodeling: Switching beyond transcription. Cell 106, 523-525 (2001).
6. Vignali, M., Hassan, A. H., Neely, K. E. and Workman, J. L. ATP-dependent chromatin-remodeling complexes. Mol. Cell. Biol. 20, 1899-1910 (2000).
7. Fry, C. J. and Peterson, C. L. Chromatin remodeling enzymes: who’s on first? Curr. Biol. 11, R185-R197 (2001).
8. Flaus, A. and Owen-Hughes, T. Mechanisms for ATP-dependent chromatin remodeling. Curr. Opin. Genet. Dev. 11, 148-154 (2001).
9. Glikin, G. C., Ruberti, I. and Worcel, A. Chromatin assembly in Xenopus oocytes: in vitro studies. Cell 37, 33-41 (1984).
10. Ito, T., Bulger, M., Pazin, M. J., Kobayashi, R. and Kadonaga, J. T. ACF, an ISWI-containing and ATP-utilizing chromatin assembly and remodeling factor. Cell 90, 145-155 (1997).
11. Ito, T. et al. ACF consists of two subunits, Acf1 and ISWI, that function cooperatively in the ATP-dependent catalysis of chromatin assembly. Genes Dev. 13, 1529-1539 (1999).
12. Lohman, T. M. and Bjornson, K. P. Mechanisms of helicase-catalyzed DNA unwinding. Annu. Rev. Biochem. 65, 169-214 (1996).
13. Gorbalenya, A. W. and Koonin, E. V. Helicases: amino acid sequence comparisons and structure-function relationships. Curr. Opin. Struct. Biol. 3, 419-429 (1993).
14. Eisen, J. A., Sweder, K. S. and Hanawalt, P. C. Evolution of the SNF2 family of proteins: subfamilies with distinct sequences and functions. Nucleic Acids Res. 23, 2715-2723 (1995).
15. Eggleston, A. K., O’Neill, T. E., Bradbury, E. M. and Kowalczykowski, S. C. Unwinding of nucleosomal DNA by a DNA helicase. J.Biol. Chem. 270, 2024-2031 (1995).
16. Ramsperger, U. and Stahl, H. Unwinding of chromatin by the SV40 large T antigen DNAhelicase. EMBO J. 14, 3215-3225 (1995).
17. Adams, C. R. and Kamakaka, R. T. Chromatin assembly: biochemical identities and genetic redundancy. Curr. Opin. Genet. Dev. 9, 185-190 (1999).
18. Verreault, A. De novo nucleosome assembly: new pieces in an old puzzle. Genes Dev. 14, 1430-1438 (2000).
19. Mello, J. A. and Almouzhi, G. The ins and outs of nucleosome assembly. Curr. Opin. Genet. Dev. 11, 136-141 (2001).
20. Velankar, S. S., Soultanas, P., Dillingham, M. S., Subramanya, H. S. and Wigley, D. B. Crystal structures of complexes of PcrA DNA helicase with a DNA substrate indicate an inchworm mechanism. Cell 97, 75-84 (1999).
21. Havas, K. et al. Generation ofsuperhelical torsion by ATP-dependent chromatin remodeling activities. Ceil 103, 1133-1142 (2000).
22. Studitsky, V M., Clark, D. J. and Felsenfeld, G. Overcoming a nucleosomal barrier to transcription. Cell 83, 19-27 (1995).
23. Kornberg, R. D. and Lorch, Y. Interplay between chromatin structure and transcription. Curr. Opin. Cell Biol. 7, 371-375 (1995).
24. Pazin, M. J. and Kadonaga, J. T. SWI2/SNF2 and related proteins: ATP-driven motors that disrupt protein-DNA interactions? Cell 88, 737-740 (1997).
25. Hamiche, A., Sandaltzopoulos, R., Gdula, D. A. and Wu, C. ATP-dependent histone octamer sliding mediated by the chromatin remodeling complex NURF. Cell 97, 833-842 (1999).
26. Langst, G., Bonte, E. J., Corona, D. F. V. and Becker, P. B. Nucleosome movement by CHRAC and ISWI without disruption or trans-displacement ofthe histone octamer. Cell 97, 843-852 (1999).
27. Eberharter, A. et al. Acf1, the largest subunit ofCHRAC, regulates ISWI-induced nucleosome remodelling. EMBO J. 20, 3781-3788 (2001).
28. Whitehouse, I. et al. Nucleosome mobilization catalysed by the yeast SWI/SNF complex. Nature 400, 784-787 (1999).