-
1
-
-
0036909632
-
Estimating divergence times from molecular data on population genetic and phylogenetic time scales
-
Arbogast, B. S., Edwards, S. V., Wakeley, J., Beerli, P. & Slowinski, J. B. 2002 Estimating divergence times from molecular data on population genetic and phylogenetic time scales. Annu. Rev. Ecol. Syst. 33, 707-740.
-
(2002)
Annu. Rev. Ecol. Syst.
, vol.33
, pp. 707-740
-
-
Arbogast, B.S.1
Edwards, S.V.2
Wakeley, J.3
Beerli, P.4
Slowinski, J.B.5
-
3
-
-
0028933362
-
Correction: DNA sequence support for a close phylogenetic relationship between some storks and New World vultures
-
Avise, J., Nelson, W. & Sibley, C. 1995 Correction: DNA sequence support for a close phylogenetic relationship between some storks and New World vultures. Proc. Natl Acad. Sci. USA 92, 3076.
-
(1995)
Proc. Natl. Acad. Sci. USA
, vol.92
, pp. 3076
-
-
Avise, J.1
Nelson, W.2
Sibley, C.3
-
4
-
-
0842347322
-
A phylogenetic hypothesis for passerine birds: Taxonomic and biogeographic implications of an analysis of nuclear DNA sequence data
-
doi: 10.1098/rspb.2001.1883
-
Barker, F. K., Barrowclough, G. F. & Groth, J. G. 2002 A phylogenetic hypothesis for passerine birds: taxonomic and biogeographic implications of an analysis of nuclear DNA sequence data. Proc. R. Soc. B 269, 295-308. (doi: 10.1098/rspb.2001.1883).
-
(2002)
Proc. R. Soc. B
, vol.269
, pp. 295-308
-
-
Barker, F.K.1
Barrowclough, G.F.2
Groth, J.G.3
-
5
-
-
3342978151
-
Phylogeny and diversification of the largest avian radiation
-
Barker, F. K., Cibois, A., Schikler, P., Feinstein, J. & Cracraft, J. 2004 Phylogeny and diversification of the largest avian radiation. Proc. Natl Acad. Sci. USA 101, 11 040-11 045.
-
(2004)
Proc. Natl. Acad. Sci. USA
, vol.101
, pp. 11040-11045
-
-
Barker, F.K.1
Cibois, A.2
Schikler, P.3
Feinstein, J.4
Cracraft, J.5
-
6
-
-
0036250811
-
Alu repeats and human genomic diversity
-
Batzer, M. & Deininger, P. L. 2002 Alu repeats and human genomic diversity. Nature Rev. Genet. 3, 370-379.
-
(2002)
Nature Rev. Genet.
, vol.3
, pp. 370-379
-
-
Batzer, M.1
Deininger, P.L.2
-
7
-
-
0036019718
-
A phylogeny of the megapodes (Aves: Megapodidae) based on nuclear and mitochondrial DNA sequences
-
Birks, S. M. & Edwards, S. V. 2002 A phylogeny of the megapodes (Aves: Megapodidae) based on nuclear and mitochondrial DNA sequences. Mol. Phylogenet. Evol. 23, 408-421.
-
(2002)
Mol. Phylogenet. Evol.
, vol.23
, pp. 408-421
-
-
Birks, S.M.1
Edwards, S.V.2
-
8
-
-
84941143640
-
Shotgun cloning as the strategy of choice to generate templates for high-throughput dideoxynucleotide sequencing
-
(ed. M. D. Adam, C. Fields & J. C. Ventner). San Diego, CA: Academic Press
-
Bodenteich, A., Chissoe, S., Wang, Y.-F. & Roe, B. A. 1994 Shotgun cloning as the strategy of choice to generate templates for high-throughput dideoxynucleotide sequencing. In Automated DNA sequencing and analysis (ed. M. D. Adam, C. Fields & J. C. Ventner), pp. 42-50. San Diego, CA: Academic Press.
-
(1994)
Automated DNA Sequencing and Analysis
, pp. 42-50
-
-
Bodenteich, A.1
Chissoe, S.2
Wang, Y.-F.3
Roe, B.A.4
-
9
-
-
0242418246
-
Phylogenetic shadowing of primate sequences to find functional regions of the human genome
-
Boflelli, D., McAuliffe, J., Ovcharenko, D., Lewis, K. D., Ovcharenko, I., Pachter, L. & Rubin, E. M. 2003 Phylogenetic shadowing of primate sequences to find functional regions of the human genome. Science 299, 1391-1394.
-
(2003)
Science
, vol.299
, pp. 1391-1394
-
-
Boflelli, D.1
McAuliffe, J.2
Ovcharenko, D.3
Lewis, K.D.4
Ovcharenko, I.5
Pachter, L.6
Rubin, E.M.7
-
10
-
-
0033561361
-
Animal mitochondrial genomes
-
Boore, J. L. 1999 Animal mitochondrial genomes. Nucleic Acids Res. 27, 1767-1780.
-
(1999)
Nucleic Acids Res.
, vol.27
, pp. 1767-1780
-
-
Boore, J.L.1
-
11
-
-
0036700155
-
Examining basal avian divergences with mitochondrial DNA sequences: Model complexity, taxon sampling and sequence length
-
Braun, E. L. & Kimball, R. T. 2002 Examining basal avian divergences with mitochondrial DNA sequences: model complexity, taxon sampling and sequence length. Syst. Biol. 51, 614-625.
-
(2002)
Syst. Biol.
, vol.51
, pp. 614-625
-
-
Braun, E.L.1
Kimball, R.T.2
-
12
-
-
1842667852
-
MAVID: Constrained ancestral alignment of multiple sequences
-
Bray, N. & Pachter, L. 2004 MAVID: constrained ancestral alignment of multiple sequences. Genome Res. 14, 693-699.
-
(2004)
Genome Res.
, vol.14
, pp. 693-699
-
-
Bray, N.1
Pachter, L.2
-
13
-
-
0037687926
-
The utility of single nucleotide polymorphisms in inferences of population history
-
Brumfield, R., Nickerson, D., Beerli, P. & Edwards, S. V. 2003 The utility of single nucleotide polymorphisms in inferences of population history. Trends Ecol. Evol. 18, 249-256.
-
(2003)
Trends Ecol. Evol.
, vol.18
, pp. 249-256
-
-
Brumfield, R.1
Nickerson, D.2
Beerli, P.3
Edwards, S.V.4
-
14
-
-
0027327411
-
Chicken repeat 1 elements contain a pol-like open reading frame and belong to the non-long terminal repeat class of retrotransposons
-
Burch, J. B. E., Davis, D. L. & Haas, N. B. 1993 Chicken repeat 1 elements contain a pol-like open reading frame and belong to the non-long terminal repeat class of retrotransposons. Proc. Natl Acad. Sci. USA 90, 8199-8203.
-
(1993)
Proc. Natl. Acad. Sci. USA
, vol.90
, pp. 8199-8203
-
-
Burch, J.B.E.1
Davis, D.L.2
Haas, N.B.3
-
15
-
-
0036045092
-
Origin and evolution of avian microchromosomes
-
Burt, D. W. 2002 Origin and evolution of avian microchromosomes. Cytogenet. Genome Res. 96, 97-112.
-
(2002)
Cytogenet. Genome Res.
, vol.96
, pp. 97-112
-
-
Burt, D.W.1
-
16
-
-
0033604564
-
The dynamics of chromosome evolution in birds and mammals
-
Burt, D. W. et al. 1999 The dynamics of chromosome evolution in birds and mammals. Nature 402, 411-413.
-
(1999)
Nature
, vol.402
, pp. 411-413
-
-
Burt, D.W.1
-
17
-
-
0026053021
-
Sequence conservation in avian CR1: An interspersed repetitive DNA family evolving under functional constraints
-
Chen, Z.-Q., Ritzel, R. G., Lin, C. C. & Hodgetts, R. B. 1991 Sequence conservation in avian CR1: an interspersed repetitive DNA family evolving under functional constraints. Proc. Natl Acad. Sci. USA 88, 5814-5818.
-
(1991)
Proc. Natl. Acad. Sci. USA
, vol.88
, pp. 5814-5818
-
-
Chen, Z.-Q.1
Ritzel, R.G.2
Lin, C.C.3
Hodgetts, R.B.4
-
18
-
-
1242352070
-
Origin and phylogeny of chloroplasts revealed by a simple correlation analysis of complete genomes
-
Chu, K. H., Qi, J., Yu, Z.-G. & Anh, V. 2004 Origin and phylogeny of chloroplasts revealed by a simple correlation analysis of complete genomes. Mol. Biol. Evol. 21, 200-206.
-
(2004)
Mol. Biol. Evol.
, vol.21
, pp. 200-206
-
-
Chu, K.H.1
Qi, J.2
Yu, Z.-G.3
Anh, V.4
-
19
-
-
0026694968
-
Sequencing errors and molecular evolutionary analysis
-
Clark, A. & Whittam, T 1992 Sequencing errors and molecular evolutionary analysis. Mol. Biol. Evol. 9, 744-752.
-
(1992)
Mol. Biol. Evol.
, vol.9
, pp. 744-752
-
-
Clark, A.1
Whittam, T.2
-
20
-
-
0030621127
-
Mass survival of birds across the Cretaceous-tertiary boundary: Molecular evidence
-
Cooper, A. & Penny, D. 1997 Mass survival of birds across the Cretaceous-tertiary boundary: molecular evidence. Science 275, 1109-1113.
-
(1997)
Science
, vol.275
, pp. 1109-1113
-
-
Cooper, A.1
Penny, D.2
-
21
-
-
0037036630
-
Going nuclear: Gene family evolution and vertebrate phylogeny reconciled
-
doi:10.1098/rspb.2002. 2074
-
Cotton, J. A. & Page, R. D. 2002 Going nuclear: gene family evolution and vertebrate phylogeny reconciled. Proc. R. Soc. B 269, 1555-1561. (doi:10.1098/rspb.2002. 2074.)
-
(2002)
Proc. R. Soc. B
, vol.269
, pp. 1555-1561
-
-
Cotton, J.A.1
Page, R.D.2
-
22
-
-
0037031698
-
NSF's ark draws alligators, algae and wasps
-
Couzins, J. 2002 NSF's ark draws alligators, algae and wasps. Science 297, 1638-1639.
-
(2002)
Science
, vol.297
, pp. 1638-1639
-
-
Couzins, J.1
-
23
-
-
0035819804
-
Avian evolution, Gondwana biogeography and the Cretaceous-Tertiary mass extinction event
-
doi:10.1098/rspb.2000.1368
-
Cracraft, J. 2001 Avian evolution, Gondwana biogeography and the Cretaceous-Tertiary mass extinction event. Proc. R. Soc. B 268, 459-469. (doi:10.1098/rspb.2000.1368.)
-
(2001)
Proc. R. Soc. B
, vol.268
, pp. 459-469
-
-
Cracraft, J.1
-
24
-
-
3042790558
-
Phylogenetic relationships among modern birds (Neornithes)
-
(ed. J. Cracraft & M. J. Donoghue). New York: Oxford University Press
-
Cracraft, J. et al. 2004 Phylogenetic relationships among modern birds (Neornithes). In Assembling the tree of life (ed. J. Cracraft & M. J. Donoghue), pp. 468-489. New York: Oxford University Press.
-
(2004)
Assembling the Tree of Life
, pp. 468-489
-
-
Cracraft, J.1
-
25
-
-
0029096506
-
Sampling properties of DNA sequence data in phylogenetic analysis
-
Cummings, M. P., Otto, S. P. & Wakeley, J. 1995 Sampling properties of DNA sequence data in phylogenetic analysis. Mol. Biol. Evol. 12, 814-822.
-
(1995)
Mol. Biol. Evol.
, vol.12
, pp. 814-822
-
-
Cummings, M.P.1
Otto, S.P.2
Wakeley, J.3
-
26
-
-
0242662461
-
Evolutionary discrimination of mammalian conserved non-genic sequences (CNGs)
-
Dermitzakis, E. T., Reymond, A., Scamuffa, N., Ucla, C., Kirkness, E., Rossier, C. & Antonarakis, S. E. 2003 Evolutionary discrimination of mammalian conserved non-genic sequences (CNGs). Science 302, 1033-1035.
-
(2003)
Science
, vol.302
, pp. 1033-1035
-
-
Dermitzakis, E.T.1
Reymond, A.2
Scamuffa, N.3
Ucla, C.4
Kirkness, E.5
Rossier, C.6
Antonarakis, S.E.7
-
27
-
-
0025343497
-
Sequence and gene organization of the chicken mitochondrial genome, a novel gene order in higher vertebrates
-
Desjardins, P. & Morais, R. 1990 Sequence and gene organization of the chicken mitochondrial genome, a novel gene order in higher vertebrates. J. Biol. Chem. 121, 599-634.
-
(1990)
J. Biol. Chem.
, vol.121
, pp. 599-634
-
-
Desjardins, P.1
Morais, R.2
-
28
-
-
0002303691
-
Relevance of microevolutionary processes for higher level molecular systematics
-
(ed. D. P. Mindell). New York: Academic Press
-
Edwards, S. V. 1997 Relevance of microevolutionary processes for higher level molecular systematics. In Avian molecular systematics and evolution (ed. D. P. Mindell), pp. 251-278. New York: Academic Press.
-
(1997)
Avian Molecular Systematics and Evolution
, pp. 251-278
-
-
Edwards, S.V.1
-
29
-
-
34547393178
-
Retraction of a thrush (Catharus guttatus) cytochromeb sequence
-
Edwards, S. V. & Arctander, P. 1996 Retraction of a thrush (Catharus guttatus) cytochromeb sequence. Proc. R. Soc. B 263, 323.
-
(1996)
Proc. R. Soc. B
, vol.263
, pp. 323
-
-
Edwards, S.V.1
Arctander, P.2
-
30
-
-
0036679696
-
Out of Gondwana: The origin of passerine birds
-
Edwards, S. V. & Boles, W. E. 2002 Out of Gondwana: the origin of passerine birds. Trends Ecol. Evol. 17, 347-349.
-
(2002)
Trends Ecol. Evol.
, vol.17
, pp. 347-349
-
-
Edwards, S.V.1
Boles, W.E.2
-
31
-
-
0025009207
-
Phylogenetically informative length polymorphism and sequence variability in mitochondrial DNA of Australian songbirds (Pomatostomus)
-
Edwards, S. V. & Wilson, A. C. 1990 Phylogenetically informative length polymorphism and sequence variability in mitochondrial DNA of Australian songbirds (Pomatostomus). Genetics 126, 695-711.
-
(1990)
Genetics
, vol.126
, pp. 695-711
-
-
Edwards, S.V.1
Wilson, A.C.2
-
32
-
-
0026035060
-
Mitochondrial resolution of a deep branch in the genealogical tree for perching birds
-
Edwards, S. V., Arctander, P. & Wilson, A. C. 1991 Mitochondrial resolution of a deep branch in the genealogical tree for perching birds. Proc. R. Soc. B 247, 99-107.
-
(1991)
Proc. R. Soc. B
, vol.247
, pp. 99-107
-
-
Edwards, S.V.1
Arctander, P.2
Wilson, A.C.3
-
33
-
-
0000737399
-
Characterization and evolution of Mhc genes from non-model organisms, with examples from birds
-
(ed. A. J. Baker). Cambridge: Blackwell Scientific
-
Edwards, S. V., Nusser, J. & Gasper, J. 2000 Characterization and evolution of Mhc genes from non-model organisms, with examples from birds. In Molecular methods in ecology (ed. A. J. Baker), pp. 168-207. Cambridge: Blackwell Scientific.
-
(2000)
Molecular Methods in Ecology
, pp. 168-207
-
-
Edwards, S.V.1
Nusser, J.2
Gasper, J.3
-
34
-
-
0036700153
-
A genomic schism in birds revealed by phylogenetic analysis of DNA strings
-
Edwards, S. V., Fertil, B., Giron, A. & Deschavanne, P. J. 2002 A genomic schism in birds revealed by phylogenetic analysis of DNA strings. Syst. Biol. 51, 599-613.
-
(2002)
Syst. Biol.
, vol.51
, pp. 599-613
-
-
Edwards, S.V.1
Fertil, B.2
Giron, A.3
Deschavanne, P.J.4
-
35
-
-
0242505896
-
Phylogeny of Passerida (Aves: Passeriformes) based on nuclear and mitochondrial sequence data
-
Ericson, P. G. P. & Johansson, U. S. 2003 Phylogeny of Passerida (Aves: Passeriformes) based on nuclear and mitochondrial sequence data. Mol. Phylogenet. Evol. 29, 126-138.
-
(2003)
Mol. Phylogenet. Evol.
, vol.29
, pp. 126-138
-
-
Ericson, P.G.P.1
Johansson, U.S.2
-
36
-
-
0033794386
-
Major divisions in oscines revealed by insertions in the nuclear gene c-myc: A novel gene in avian phylogenetics
-
Ericson, P. G. P., Johansson, U. S. & Parsons, T. J. 2000 Major divisions in oscines revealed by insertions in the nuclear gene c-myc: a novel gene in avian phylogenetics. Auk 117, 1069-1078.
-
(2000)
Auk
, vol.117
, pp. 1069-1078
-
-
Ericson, P.G.P.1
Johansson, U.S.2
Parsons, T.J.3
-
37
-
-
53149138969
-
A Gondwanan origin of passerine birds supported by DNA sequences of the endemic New Zealand wrens
-
doi:10.1098/rspb.2001.1877
-
Ericson, P. G., Christidis, L., Cooper, A., Irestedt, M., Jackson, J., Johansson, U. S. & Norman, J. A. 2002 A Gondwanan origin of passerine birds supported by DNA sequences of the endemic New Zealand wrens. Proc. R. Soc. B 269, 235-241. (doi:10.1098/rspb.2001.1877.)
-
(2002)
Proc. R. Soc. B
, vol.269
, pp. 235-241
-
-
Ericson, P.G.1
Christidis, L.2
Cooper, A.3
Irestedt, M.4
Jackson, J.5
Johansson, U.S.6
Norman, J.A.7
-
38
-
-
0031978181
-
Base-calling of automated sequencer traces using PHRED. II. Error probabilities
-
Ewing, B. & Green, P. 1998 Base-calling of automated sequencer traces using PHRED. II. Error probabilities. Genome Res. 8, 186-194.
-
(1998)
Genome Res
, vol.8
, pp. 186-194
-
-
Ewing, B.1
Green, P.2
-
39
-
-
9244239245
-
Parallel radiations in the primary clades of birds
-
Fain, M. G. & Houde, P. 2004 Parallel radiations in the primary clades of birds. Evolution 58, 2558-2573.
-
(2004)
Evolution
, vol.58
, pp. 2558-2573
-
-
Fain, M.G.1
Houde, P.2
-
41
-
-
0842322955
-
Species-level paraphyly and polyphyly: Frequency, causes, and consequences, with insights from animal mitochondrial DNA
-
Funk, D. J. & Omland, K. E. 2003 Species-level paraphyly and polyphyly: frequency, causes, and consequences, with insights from animal mitochondrial DNA. Annu. Rev. Ecol. Evol. Syst. 34, 397-423.
-
(2003)
Annu. Rev. Ecol. Evol. Syst.
, vol.34
, pp. 397-423
-
-
Funk, D.J.1
Omland, K.E.2
-
42
-
-
0033635879
-
Rooting a phylogeny with homologous genes on opposite sex chromosomes (gametologs): A case study using avian CHD
-
Garcia-Moreno, J. & Mindell, D. P. 2000 Rooting a phylogeny with homologous genes on opposite sex chromosomes (gametologs): a case study using avian CHD. Mol. Biol. Evol. 17, 1826-1832.
-
(2000)
Mol. Biol. Evol.
, vol.17
, pp. 1826-1832
-
-
Garcia-Moreno, J.1
Mindell, D.P.2
-
43
-
-
0034975916
-
Songbird genomics: Analysis of 45-kb upstream of a polymorphic Mhc class II gene in Red-winged Blackbird (Agelaius phoeniceus)
-
Gasper, J., Shiina, T., Inoko, H. & Edwards, S. V. 2001 Songbird genomics: analysis of 45-kb upstream of a polymorphic Mhc class II gene in Red-winged Blackbird (Agelaius phoeniceus). Genomics 75, 26-34.
-
(2001)
Genomics
, vol.75
, pp. 26-34
-
-
Gasper, J.1
Shiina, T.2
Inoko, H.3
Edwards, S.V.4
-
44
-
-
0030966099
-
Recent advances in understanding V(D)J recombination
-
Gellert, M. 1996 Recent advances in understanding V(D)J recombination. Adv. Immunol. 64, 39-64.
-
(1996)
Adv. Immunol.
, vol.64
, pp. 39-64
-
-
Gellert, M.1
-
45
-
-
0034860288
-
Chicken microchromosomes are hypermethylated and can be identified by specific painting probes
-
Grützner, F., Zend-Ajusch, E., Stout, K., Munsche, S., Niveleau, A., Nanda, I., Schmid, M. & Haaf, T. 2001 Chicken microchromosomes are hypermethylated and can be identified by specific painting probes. Cytogenet. Cell Genet. 93, 265-269.
-
(2001)
Cytogenet. Cell Genet.
, vol.93
, pp. 265-269
-
-
Grützner, F.1
Zend-Ajusch, E.2
Stout, K.3
Munsche, S.4
Niveleau, A.5
Nanda, I.6
Schmid, M.7
Haaf, T.8
-
46
-
-
0033159606
-
Basal divergences in birds and the phylogenetic utility of the nuclear RAG-1 gene
-
Groth, J. G. & Barrowclough, G. F. 1999 Basal divergences in birds and the phylogenetic utility of the nuclear RAG-1 gene. Mol. Phylogenet. Evol. 12, 115-123.
-
(1999)
Mol. Phylogenet. Evol.
, vol.12
, pp. 115-123
-
-
Groth, J.G.1
Barrowclough, G.F.2
-
47
-
-
1642569228
-
Comparative chromosome painting of chicken autosomal paints 1-9 in nine different bird species
-
Guttenbach, M., Nanda, I., Feichtinger, W., Masabanda, J. S., Griffin, D. K. & Schmid, M. 2003 Comparative chromosome painting of chicken autosomal paints 1-9 in nine different bird species. Cytogenet. Genome Res. 103, 173-184.
-
(2003)
Cytogenet. Genome Res.
, vol.103
, pp. 173-184
-
-
Guttenbach, M.1
Nanda, I.2
Feichtinger, W.3
Masabanda, J.S.4
Griffin, D.K.5
Schmid, M.6
-
48
-
-
0033531328
-
Analyses of mitochondrial DNA nest ratite birds within the Neognathae: Supporting a neotenous origin of ratite morphological characters
-
doi:10.1098/rspb.1999.0638
-
Härlid, A. & Arnason, U. 1999 Analyses of mitochondrial DNA nest ratite birds within the Neognathae: supporting a neotenous origin of ratite morphological characters. Proc. R. Soc. B 266, 305-309. (doi:10.1098/rspb.1999. 0638.)
-
(1999)
Proc. R. Soc. B
, vol.266
, pp. 305-309
-
-
Härlid, A.1
Arnason, U.2
-
49
-
-
1842378594
-
The mtDNA sequence of the ostrich and the divergence between paleognathous and neognathous birds
-
Härlid, A., Janke, A. & Arnason, U. 1997 The mtDNA sequence of the ostrich and the divergence between paleognathous and neognathous birds. Mol. Biol. Evol. 14, 754-761.
-
(1997)
Mol. Biol. Evol.
, vol.14
, pp. 754-761
-
-
Härlid, A.1
Janke, A.2
Arnason, U.3
-
50
-
-
0031810766
-
The complete mitochondrial genome of Rhea americana and early avian divergences
-
Härlid, A., Janke, A. & Arnason, U. 1998 The complete mitochondrial genome of Rhea americana and early avian divergences. J. Mol. Evol. 46, 669-679.
-
(1998)
J. Mol. Evol.
, vol.46
, pp. 669-679
-
-
Härlid, A.1
Janke, A.2
Arnason, U.3
-
51
-
-
2442667686
-
Four new mitochondrial genomes help get to basic evolutionary questions in the late Cretaceous
-
Harrison, G. L., McLenachan, P. A., Phillips, M. J., Slack, K. E., Cooper, A. & Penny, D. 2004 Four new mitochondrial genomes help get to basic evolutionary questions in the late Cretaceous. Mol. Biol. Evol. 21, 974-983.
-
(2004)
Mol. Biol. Evol.
, vol.21
, pp. 974-983
-
-
Harrison, G.L.1
McLenachan, P.A.2
Phillips, M.J.3
Slack, K.E.4
Cooper, A.5
Penny, D.6
-
52
-
-
2442667686
-
Four new avian mitochondrial genomes help get to basic evolutionary questions in the late Cretaceous
-
Harrison, G. L., McLenachan, P. A., Phillips, M. J., Slack, K. E., Cooper, A. & Penny, D. 2004 Four new avian mitochondrial genomes help get to basic evolutionary questions in the late Cretaceous. Mol. Biol. Evol. 21, 974-983.
-
(2004)
Mol. Biol. Evol.
, vol.21
, pp. 974-983
-
-
Harrison, G.L.1
McLenachan, P.A.2
Phillips, M.J.3
Slack, K.E.4
Cooper, A.5
Penny, D.6
-
53
-
-
0028355535
-
Molecular evidence for the origin of birds
-
Hedges, S. B. 1994 Molecular evidence for the origin of birds. Proc. Natl Acad. Sci. USA 91, 2621-2624.
-
(1994)
Proc. Natl. Acad. Sci. USA
, vol.91
, pp. 2621-2624
-
-
Hedges, S.B.1
-
54
-
-
0029669270
-
Continental breakup and the ordinal diversification of birds and mammals
-
Hedges, S. B., Parker, P. H., Sibley, C. G. & Kumar, S. 1996 Continental breakup and the ordinal diversification of birds and mammals. Nature 381, 226-229.
-
(1996)
Nature
, vol.381
, pp. 226-229
-
-
Hedges, S.B.1
Parker, P.H.2
Sibley, C.G.3
Kumar, S.4
-
55
-
-
0034126368
-
MHC class II pseudogene and genomic signature of a 32-kb cosmid in the house finch (Carpodacus mexicanus)
-
Hess, C. M., Gasper, J., Hoekstra, H., Hill, C. &Edwards, S. V. 2000 MHC class II pseudogene and genomic signature of a 32-kb cosmid in the house finch (Carpodacus mexicanus). Genome Res. 10, 613-623.
-
(2000)
Genome Res.
, vol.10
, pp. 613-623
-
-
Hess, C.M.1
Gasper, J.2
Hoekstra, H.3
Hill, C.4
Edwards, S.V.5
-
56
-
-
0032023889
-
Taxonomic sampling, phylogenetic accuracy, and investigator bias
-
Hillis, D. M. 1998 Taxonomic sampling, phylogenetic accuracy, and investigator bias. Syst. Biol. 47, 3-8.
-
(1998)
Syst. Biol.
, vol.47
, pp. 3-8
-
-
Hillis, D.M.1
-
57
-
-
0242669921
-
Is sparse taxon sampling a problem for phylogenetic inference?
-
Hillis, D. M., Pollock, D. D., McGuire, J. A. & Zwickl, D. J. 2003 Is sparse taxon sampling a problem for phylogenetic inference? Syst. Biol. 52, 124-126.
-
(2003)
Syst. Biol.
, vol.52
, pp. 124-126
-
-
Hillis, D.M.1
Pollock, D.D.2
McGuire, J.A.3
Zwickl, D.J.4
-
58
-
-
10644283823
-
Sequence and comparative analysis of the chicken genome provide unique perspectives on vertebrate evolution
-
International Chicken Genome Sequencing Consortium 2004 Sequence and comparative analysis of the chicken genome provide unique perspectives on vertebrate evolution. Nature 432, 695-716.
-
(2004)
Nature
, vol.432
, pp. 695-716
-
-
-
59
-
-
0035064818
-
Phylogeny of major lineages of suboscines (Passeriformes) analysed by nuclear DNA sequence data
-
Irestedt, M., Johansson, U. S., Parsons, T. J. & Ericson, P. G. P. 2001 Phylogeny of major lineages of suboscines (Passeriformes) analysed by nuclear DNA sequence data. J. Avian Biol. 32, 15-25.
-
(2001)
J. Avian Biol.
, vol.32
, pp. 15-25
-
-
Irestedt, M.1
Johansson, U.S.2
Parsons, T.J.3
Ericson, P.G.P.4
-
60
-
-
12444257534
-
Phylogenetic relationships of typical antbirds (Thamnophilidae) and test of incongruence based on Bayes factors
-
Irestedt, M., Fjeldså, J., Nylander, J. A. A. & Ericson, P. G. P. 2004 Phylogenetic relationships of typical antbirds (Thamnophilidae) and test of incongruence based on Bayes factors. BMC Evol. Biol. 4, 23.
-
(2004)
BMC Evol. Biol.
, vol.4
, pp. 23
-
-
Irestedt, M.1
Fjeldså, J.2
Nylander, J.A.A.3
Ericson, P.G.P.4
-
61
-
-
0035527384
-
Taxon sampling and the phylogenetic position of passeriformes: Evidence from 916 avian cytochrome b sequences
-
Johnson, K. P. 2001 Taxon sampling and the phylogenetic position of passeriformes: evidence from 916 avian cytochrome b sequences. Syst. Biol. 50, 128-136.
-
(2001)
Syst. Biol.
, vol.50
, pp. 128-136
-
-
Johnson, K.P.1
-
62
-
-
1542614593
-
Deletion bias in avian introns over evolutionary timescales
-
Johnson, K. P. 2004 Deletion bias in avian introns over evolutionary timescales. Mol. Biol. Evol. 21, 599-602.
-
(2004)
Mol. Biol. Evol.
, vol.21
, pp. 599-602
-
-
Johnson, K.P.1
-
63
-
-
0036849412
-
LINEs mobilize SINEs in the Eel through a shared 3′ sequence
-
Kajikawa, M. & Okada, N. 2002 LINEs mobilize SINEs in the Eel through a shared 3′ sequence. Cell 111, 433-444.
-
(2002)
Cell
, vol.111
, pp. 433-444
-
-
Kajikawa, M.1
Okada, N.2
-
64
-
-
0030731154
-
Determination of the entire sequence of turtle CR1: The first open reading frame of the turtle CR1 element encodes a protein with a novel zinc finger motif
-
Kajikawa, M., Ohshima, K. & Okada, N. 1997 Determination of the entire sequence of turtle CR1: the first open reading frame of the turtle CR1 element encodes a protein with a novel zinc finger motif. Mol. Biol. Evol. 14, 1206-1217.
-
(1997)
Mol. Biol. Evol.
, vol.14
, pp. 1206-1217
-
-
Kajikawa, M.1
Ohshima, K.2
Okada, N.3
-
65
-
-
0033613425
-
The chicken B locus is a minimal-essential major histocompatibility complex
-
Kaufman, J., Milne, S., Göbel, Walker, B. A., Jacob, J. P., Auffrey, C., Zoorob, R. & Beck, S. 1999 The chicken B locus is a minimal-essential major histocompatibility complex. Nature 401, 923-925.
-
(1999)
Nature
, vol.401
, pp. 923-925
-
-
Kaufman, J.1
Milne, S.2
Göbel3
Walker, B.A.4
Jacob, J.P.5
Auffrey, C.6
Zoorob, R.7
Beck, S.8
-
66
-
-
1542513556
-
Mobile elements: Drivers of genome evolution
-
Kazazian, H. H. J. 2004 Mobile elements: drivers of genome evolution. Science 303, 1626-1632.
-
(2004)
Science
, vol.303
, pp. 1626-1632
-
-
Kazazian, H.H.J.1
-
67
-
-
0034896322
-
A molecular phylogeny of the peacockpheasants (Galliformes: Polyplectron spp.) indicates loss and reduction of ornamental traits and display behaviours
-
Kimball, R. T., Braun, E. L., Ligon, J. D., Lucchini, V. & Randi, E. 2001 A molecular phylogeny of the peacockpheasants (Galliformes: Polyplectron spp.) indicates loss and reduction of ornamental traits and display behaviours. Biol. J. Linn. Soc. 73, 187-198.
-
(2001)
Biol. J. Linn. Soc.
, vol.73
, pp. 187-198
-
-
Kimball, R.T.1
Braun, E.L.2
Ligon, J.D.3
Lucchini, V.4
Randi, E.5
-
68
-
-
0024382879
-
Dynamics of mitochondrial DNA evolution in animals: Amplification and sequencing with conserved primers
-
Kocher, T. D., Thomas, W. K., Meyer, A., Edwards, S. V., Pääbo, S., Villablanca, F. X. & Wilson, A. C. 1989 Dynamics of mitochondrial DNA evolution in animals: amplification and sequencing with conserved primers. Proc. Natl Acad. Sci. USA 86, 6196-6200.
-
(1989)
Proc. Natl. Acad. Sci. USA
, vol.86
, pp. 6196-6200
-
-
Kocher, T.D.1
Thomas, W.K.2
Meyer, A.3
Edwards, S.V.4
Pääbo, S.5
Villablanca, F.X.6
Wilson, A.C.7
-
69
-
-
0032976398
-
The age and evolution of non-LTR retrotransposable elements
-
Malik, H. S., Burke, W. D. & Eickbush, T. 1999 The age and evolution of non-LTR retrotransposable elements. Mol. Biol. Evol. 16, 793-805.
-
(1999)
Mol. Biol. Evol.
, vol.16
, pp. 793-805
-
-
Malik, H.S.1
Burke, W.D.2
Eickbush, T.3
-
70
-
-
10744222156
-
Identification and characterization of multi-species conserved sequences
-
Margulies, E. H., Blanchette, M., Haussler, D. & Green, E. D. 2003 Identification and characterization of multi-species conserved sequences. Genome Res. 13, 2507-2518.
-
(2003)
Genome Res.
, vol.13
, pp. 2507-2518
-
-
Margulies, E.H.1
Blanchette, M.2
Haussler, D.3
Green, E.D.4
-
71
-
-
0033615479
-
The root of angiosperm phylogeny inferred from duplicate phytochrome genes
-
Mathews, S. & Donoghue, M. J. 1999 The root of angiosperm phylogeny inferred from duplicate phytochrome genes. Science 286, 947-950.
-
(1999)
Science
, vol.286
, pp. 947-950
-
-
Mathews, S.1
Donoghue, M.J.2
-
72
-
-
0035527353
-
Mining the mammalian genome for artiodactyl systematics
-
Matthee, C. A., Burzlaff, J. D., Taylor, J. F. & Davis, S. K. 2001 Mining the mammalian genome for artiodactyl systematics. Syst. Biol 50, 367-390.
-
(2001)
Syst. Biol
, vol.50
, pp. 367-390
-
-
Matthee, C.A.1
Burzlaff, J.D.2
Taylor, J.F.3
Davis, S.K.4
-
73
-
-
5444257222
-
Comparative genomics
-
Miller, W., Makova, K. D., Nekrutenko, A. & Hardison, R. C. 2004 Comparative genomics. Annu. Rev. Genomics Hum. Genet. 5, 15-56.
-
(2004)
Annu. Rev. Genomics Hum. Genet.
, vol.5
, pp. 15-56
-
-
Miller, W.1
Makova, K.D.2
Nekrutenko, A.3
Hardison, R.C.4
-
74
-
-
0001679340
-
Slow rates of molecular evolution in birds and the metabolic rate and body temperature hypotheses
-
Mindell, D. P., Knight, A., Baer, C. & Huddleston, C. J. 1996 Slow rates of molecular evolution in birds and the metabolic rate and body temperature hypotheses. Mol. Biol. Evol. 13, 422-426.
-
(1996)
Mol. Biol. Evol.
, vol.13
, pp. 422-426
-
-
Mindell, D.P.1
Knight, A.2
Baer, C.3
Huddleston, C.J.4
-
75
-
-
0032169857
-
Multiple independent origins of mitochondrial gene order in birds
-
Mindell, D. P., Sorenson, M. D. & Dimcheff, D. E. 1998 Multiple independent origins of mitochondrial gene order in birds. Proc. Natl Acad. Sci. USA 95, 10 693-10 697.
-
(1998)
Proc. Natl. Acad. Sci. USA
, vol.95
, pp. 10693-10697
-
-
Mindell, D.P.1
Sorenson, M.D.2
Dimcheff, D.E.3
-
76
-
-
0033084950
-
Interordinal relationships of birds and other reptiles based on whole mitochondrial genomes
-
Mindell, D. P., Sorenson, M. D., Dimcheff, D. E., Hasegawa, M., Ast, J. C. & Yuri, T. 1999 Interordinal relationships of birds and other reptiles based on whole mitochondrial genomes. Syst. Biol. 48, 138-152.
-
(1999)
Syst. Biol.
, vol.48
, pp. 138-152
-
-
Mindell, D.P.1
Sorenson, M.D.2
Dimcheff, D.E.3
Hasegawa, M.4
Ast, J.C.5
Yuri, T.6
-
77
-
-
0034749003
-
Mitogenomic exploration of higher teleostean phylogenies: A case study for moderate-scale evolutionary genomics with 38 newly determined complete mitochondrial DNA sequences
-
Miya, M., Kawaguchi, A. & Nishida, M. 2001 Mitogenomic exploration of higher teleostean phylogenies: a case study for moderate-scale evolutionary genomics with 38 newly determined complete mitochondrial DNA sequences. Mol. Biol. Evol 18, 1993-2009.
-
(2001)
Mol. Biol. Evol.
, vol.18
, pp. 1993-2009
-
-
Miya, M.1
Kawaguchi, A.2
Nishida, M.3
-
78
-
-
0036871217
-
Distribution of telomeric (TTAGGG) (n) sequences in avian chromosomes
-
Nanda, I., Schrama, D., Feichtinger, W., Haaf, T., Schartl, M. & Schmid, M. 2002 Distribution of telomeric (TTAGGG) (n) sequences in avian chromosomes. Chromosoma 111, 215-227.
-
(2002)
Chromosoma
, vol.111
, pp. 215-227
-
-
Nanda, I.1
Schrama, D.2
Feichtinger, W.3
Haaf, T.4
Schartl, M.5
Schmid, M.6
-
79
-
-
0034520771
-
Assessment of compositional heterogeneity within and between eukaryotic genomes
-
Nekrutenko, A. & Li, W. H. 2000 Assessment of compositional heterogeneity within and between eukaryotic genomes. Genome Res. 10, 1986-1995.
-
(2000)
Genome Res.
, vol.10
, pp. 1986-1995
-
-
Nekrutenko, A.1
Li, W.H.2
-
80
-
-
0030872838
-
PolyPhred: Automating the detection and genotyping of single nucleotide substitutions using fluorescence-based resequencing
-
Nickerson, D. A., Tobe, V. O. & Taylor, S. L. 1997 PolyPhred: automating the detection and genotyping of single nucleotide substitutions using fluorescence-based resequencing. Nucleic Acids Res. 25, 2745-2751.
-
(1997)
Nucleic Acids Res.
, vol.25
, pp. 2745-2751
-
-
Nickerson, D.A.1
Tobe, V.O.2
Taylor, S.L.3
-
81
-
-
0032051440
-
Maximum likelihood estimation of population divergence times and population phylogenies under the infinite sites model
-
Nielsen, R. 1998 Maximum likelihood estimation of population divergence times and population phylogenies under the infinite sites model. Theor. Popul. Biol. 53, 143-151.
-
(1998)
Theor. Popul. Biol.
, vol.53
, pp. 143-151
-
-
Nielsen, R.1
-
82
-
-
0033621101
-
Phylogenetic relationships among cetartiodactyls based on evidence from insertions of SINEs and LINEs: Hippopotamuses are the closest extant relatives of whales
-
Nikaido, M., Rooney, A. P. & Okada, N. 1999 Phylogenetic relationships among cetartiodactyls based on evidence from insertions of SINEs and LINEs: hippopotamuses are the closest extant relatives of whales. Proc. Natl Acad. Sci. USA 96, 10 261-10 266.
-
(1999)
Proc. Natl. Acad. Sci. USA
, vol.96
, pp. 10261-10266
-
-
Nikaido, M.1
Rooney, A.P.2
Okada, N.3
-
83
-
-
0035912816
-
Retroposon analysis of major cetacean lineages: The monophyly of toothed whales and the paraphyly of river dolphins
-
Nikaido, M. et al. 2001 Retroposon analysis of major cetacean lineages: the monophyly of toothed whales and the paraphyly of river dolphins. Proc. Natl Acad. Sci. USA 98, 7384-7389.
-
(2001)
Proc. Natl. Acad. Sci. USA
, vol.98
, pp. 7384-7389
-
-
Nikaido, M.1
-
84
-
-
1642341403
-
Bayesian phylogenetic analysis of combined data
-
Nylander, J. A., Ronquist, F., Huelsenbeck, J. P. & Nieves-Aldrey, J. L. 2004 Bayesian phylogenetic analysis of combined data. Syst. Biol. 53, 47-67.
-
(2004)
Syst. Biol.
, vol.53
, pp. 47-67
-
-
Nylander, J.A.1
Ronquist, F.2
Huelsenbeck, J.P.3
Nieves-Aldrey, J.L.4
-
85
-
-
2542452120
-
Retroposon mapping in molecular systematics
-
(ed. W. J. Miller & P. Capy). Tatowa, NJ: Humana Press Inc.
-
Okada, N., Shedlock, A. M. & Nikaido, M. 2003 Retroposon mapping in molecular systematics. In Methods in molecular biology. Mobile genetic elements, vol. 260, (ed. W. J. Miller & P. Capy), pp. 189-226. Tatowa, NJ: Humana Press Inc.
-
(2003)
Methods in Molecular Biology. Mobile Genetic Elements
, vol.260
, pp. 189-226
-
-
Okada, N.1
Shedlock, A.M.2
Nikaido, M.3
-
86
-
-
0000353810
-
Inferring phylogenies from DNA sequence data: The effects of sampling
-
(ed. P. H. Harvey, A. J. L. Brown, J. Maynard Smith & S. Nee). New York: Oxford Univerity Press
-
Otto, S. P., Cummings, M. P. & Wakeley, J. 1996 Inferring phylogenies from DNA sequence data: the effects of sampling. In New uses for new phylogenies (ed. P. H. Harvey, A. J. L. Brown, J. Maynard Smith & S. Nee), pp. 103-115. New York: Oxford Univerity Press.
-
(1996)
New Uses for New Phylogenies
, pp. 103-115
-
-
Otto, S.P.1
Cummings, M.P.2
Wakeley, J.3
-
87
-
-
0001506399
-
Complete mitochondrial DNA genome sequences show that modern birds are not descended from transitional shorebirds
-
doi:10.1098/rspb.2002.1961
-
Paton, T, Haddrath, O. & Baker, A. J. 2002 Complete mitochondrial DNA genome sequences show that modern birds are not descended from transitional shorebirds. Proc. R. Soc. B 269, 839-846. (doi:10.1098/rspb.2002.1961.)
-
(2002)
Proc. R. Soc. B
, vol.269
, pp. 839-846
-
-
Paton, T.1
Haddrath, O.2
Baker, A.J.3
-
88
-
-
1642322100
-
RAG-1 sequences resolve phylogenetic relationships within Charadriiform birds
-
Paton, T. A., Baker, A. J., Groth, G. & Barrowclough, G. F. 2003 RAG-1 sequences resolve phylogenetic relationships within Charadriiform birds. Mol. Phylogenet. Evol. 29, 268-278.
-
(2003)
Mol. Phylogenet. Evol.
, vol.29
, pp. 268-278
-
-
Paton, T.A.1
Baker, A.J.2
Groth, G.3
Barrowclough, G.F.4
-
89
-
-
0346525115
-
Combined nuclear and mitochondrial DNA sequences resolve generic relationships within the Cracidae (Galliformes, Aves)
-
Pereira, S. L., Baker, A. J. & Wajntal, A. 2002 Combined nuclear and mitochondrial DNA sequences resolve generic relationships within the Cracidae (Galliformes, Aves). Syst. Biol. 51, 946-958.
-
(2002)
Syst. Biol.
, vol.51
, pp. 946-958
-
-
Pereira, S.L.1
Baker, A.J.2
Wajntal, A.3
-
90
-
-
1642401431
-
Birds in a bush: Five genes indicate explosive evolution of avian orders
-
Poe, S. & Chubb, A. L. 2004 Birds in a bush: five genes indicate explosive evolution of avian orders. Evolution 58, 404-415.
-
(2004)
Evolution
, vol.58
, pp. 404-415
-
-
Poe, S.1
Chubb, A.L.2
-
91
-
-
0033639232
-
A case for evolutionary genomics and the comprehensive examination of sequence biodiversity
-
Pollock, D. D., Eisen, J. A., Doggett, N. A. & Cummings, M. P. 2000 A case for evolutionary genomics and the comprehensive examination of sequence biodiversity. Mol. Biol. Evol 17, 1776-1788.
-
(2000)
Mol. Biol. Evol.
, vol.17
, pp. 1776-1788
-
-
Pollock, D.D.1
Eisen, J.A.2
Doggett, N.A.3
Cummings, M.P.4
-
92
-
-
0036699885
-
Increased taxon sampling is advantageous for phylogenetic inference
-
Pollock, D. D., Zwickl, D. J., McGuire, J. A. & Hillis, D. M. 2002 Increased taxon sampling is advantageous for phylogenetic inference. Syst. Biol. 51, 664-671.
-
(2002)
Syst. Biol.
, vol.51
, pp. 664-671
-
-
Pollock, D.D.1
Zwickl, D.J.2
McGuire, J.A.3
Hillis, D.M.4
-
93
-
-
0031255043
-
The utility of DNA sequences of an intron from the B-fibrinogen gene in phylogenetic analysis of woodpeckers (Aves: Picidae)
-
Prychitko, T. M. & Moore, W. S. 1997 The utility of DNA sequences of an intron from the B-fibrinogen gene in phylogenetic analysis of woodpeckers (Aves: Picidae). Mol. Phylogenet. Evol. 8, 193-204.
-
(1997)
Mol. Phylogenet. Evol.
, vol.8
, pp. 193-204
-
-
Prychitko, T.M.1
Moore, W.S.2
-
94
-
-
0038370222
-
Alignment and phylogenetic analysis of b-fibrinogen intron 7 sequences among avian orders reveal conserved regions within the intron
-
Prychitko, T. M. & Moore, W. S. 2003 Alignment and phylogenetic analysis of b-fibrinogen intron 7 sequences among avian orders reveal conserved regions within the intron. Mol. Biol. Evol. 20, 762-771.
-
(2003)
Mol. Biol. Evol.
, vol.20
, pp. 762-771
-
-
Prychitko, T.M.1
Moore, W.S.2
-
95
-
-
0041817551
-
Bayes estimation of species divergence times and ancestral population sizes using DNA sequences from multiple loci
-
Rannala, B. & Yang, Z. 2003 Bayes estimation of species divergence times and ancestral population sizes using DNA sequences from multiple loci. Genetics 164, 1645-1656.
-
(2003)
Genetics
, vol.164
, pp. 1645-1656
-
-
Rannala, B.1
Yang, Z.2
-
96
-
-
0036982869
-
Cytogenetic analysis of California condor (Gymnogyps californianus) chromosomes: Comparison with chicken (Gallus gallus) macrochromosomes
-
Raudsepp, T., Houck, M. L., O'Brien, P. C., Ferguson-Smith, M. A., Ryder, O. A. & Chowdhary, B. P. 2002 Cytogenetic analysis of California condor (Gymnogyps californianus) chromosomes: comparison with chicken (Gallus gallus) macrochromosomes. Cytogenet. Genome Res. 98, 54-60.
-
(2002)
Cytogenet. Genome Res.
, vol.98
, pp. 54-60
-
-
Raudsepp, T.1
Houck, M.L.2
O'Brien, P.C.3
Ferguson-Smith, M.A.4
Ryder, O.A.5
Chowdhary, B.P.6
-
97
-
-
0036283567
-
Genetic variation at the O-antigen biosynthetic locus in Pseudomonas aeruginosa
-
Raymond, C. K., Sims, E. H., Kas, A., Spencer, D. H., Kutyavin, T. V., Ivey, R. G., Zhou, Y., Kaul, R., Clendenning, J. B. & Olson, M. V. 2002 Genetic variation at the O-antigen biosynthetic locus in Pseudomonas aeruginosa. J. Bacteriol. 184, 3614-3622.
-
(2002)
J. Bacteriol.
, vol.184
, pp. 3614-3622
-
-
Raymond, C.K.1
Sims, E.H.2
Kas, A.3
Spencer, D.H.4
Kutyavin, T.V.5
Ivey, R.G.6
Zhou, Y.7
Kaul, R.8
Clendenning, J.B.9
Olson, M.V.10
-
98
-
-
0036144866
-
Linker-mediated recombinational subcloning of large DNA fragments using yeast
-
Raymond, C. K., Sims, E. H. & Olson, M. V. 20026 Linker-mediated recombinational subcloning of large DNA fragments using yeast. Genome Res. 12, 190-197.
-
(2002)
Genome Res.
, vol.12
, pp. 190-197
-
-
Raymond, C.K.1
Sims, E.H.2
Olson, M.V.3
-
99
-
-
0032519307
-
Automating the identification of DNA variations using quality-based fluorescence re-sequencing: Analysis of the human mitochondrial genome
-
Rieder, M. J., Taylor, S. L., Tobe, V. O. & Nickerson, D. A. 1998 Automating the identification of DNA variations using quality-based fluorescence re-sequencing: analysis of the human mitochondrial genome. Nucleic Acids Res. 26, 967-973.
-
(1998)
Nucleic Acids Res.
, vol.26
, pp. 967-973
-
-
Rieder, M.J.1
Taylor, S.L.2
Tobe, V.O.3
Nickerson, D.A.4
-
100
-
-
3242669940
-
Cross-species chromosome painting in the golden mole and elephant-shrew: Support for the mammalian clades Afrotheria and Afroinsectiphillia but not Afroinsectivora
-
doi: 10.1098/rspb.2004.2754
-
Robinson, T. J., Fu, B., Ferguson-Smith, M. A. & Yang, F. 2004 Cross-species chromosome painting in the golden mole and elephant-shrew: support for the mammalian clades Afrotheria and Afroinsectiphillia but not Afroinsectivora. Proc. R. Soc. B 271, 1477-1484. (doi: 10.1098/rspb.2004.2754.)
-
(2004)
Proc. R. Soc. B
, vol.271
, pp. 1477-1484
-
-
Robinson, T.J.1
Fu, B.2
Ferguson-Smith, M.A.3
Yang, F.4
-
101
-
-
0842287917
-
A molecular phylogeny of Amazona: Implications for neotropical parrot biogeography, taxonomy, and conservation
-
Russello, M. A. & Amato, G. 2004 A molecular phylogeny of Amazona: implications for neotropical parrot biogeography, taxonomy, and conservation. Mol. Phylogenet. Evol. 30, 421-437.
-
(2004)
Mol. Phylogenet. Evol.
, vol.30
, pp. 421-437
-
-
Russello, M.A.1
Amato, G.2
-
102
-
-
0022833247
-
The number of nucleotides required to determine the branching order of three species, with special reference to the human-chimpanzee-gorilla divergence
-
Saitou, N. & Nei, M. 1986 The number of nucleotides required to determine the branching order of three species, with special reference to the human-chimpanzee-gorilla divergence. J. Mol. Evol. 24, 189-204.
-
(1986)
J. Mol. Evol.
, vol.24
, pp. 189-204
-
-
Saitou, N.1
Nei, M.2
-
103
-
-
1842452859
-
First application of the SINE (short interspersed repetitive element) method to infer phylogenetic relationships in reptiles: An example from the turtle superfamily Testudinoidea
-
Sasaki, T, Takahashi, K., Nikaido, M., Miura, S., Yasukawa, Y. & Okada, N. 2004 First application of the SINE (short interspersed repetitive element) method to infer phylogenetic relationships in reptiles: an example from the turtle superfamily Testudinoidea. Mol. Biol. Evol. 21, 705-715.
-
(2004)
Mol. Biol. Evol.
, vol.21
, pp. 705-715
-
-
Sasaki, T.1
Takahashi, K.2
Nikaido, M.3
Miura, S.4
Yasukawa, Y.5
Okada, N.6
-
104
-
-
1842507574
-
Phylo-VISTA: Interactive visualization of multiple DNA sequence alignments
-
Shah, N., Couronne, O., Pennacchio, L. A., Brudno, M., Batzoglou, S., Bethel, E. W., Rubin, E. M. et al. 2004 Phylo-VISTA: interactive visualization of multiple DNA sequence alignments. Bioinformatics 20, 636-643.
-
(2004)
Bioinformatics
, vol.20
, pp. 636-643
-
-
Shah, N.1
Couronne, O.2
Pennacchio, L.A.3
Brudno, M.4
Batzoglou, S.5
Bethel, E.W.6
Rubin, E.M.7
-
105
-
-
0033964296
-
SINE insertions: Powerful tools for molecular systematics
-
Shedlock, A. M. & Okada, N. 2000 SINE insertions: powerful tools for molecular systematics. Bioessays 22, 148-160.
-
(2000)
Bioessays
, vol.22
, pp. 148-160
-
-
Shedlock, A.M.1
Okada, N.2
-
106
-
-
4544222472
-
SINEs of speciation: Tracking lineages with retroposons
-
Shedlock, A. M., Takahashi, K. & Okada, N. 2004 SINEs of speciation: tracking lineages with retroposons. Trends Ecol. Evol. 19, 545-553.
-
(2004)
Trends Ecol. Evol.
, vol.19
, pp. 545-553
-
-
Shedlock, A.M.1
Takahashi, K.2
Okada, N.3
-
107
-
-
1942499454
-
Advanced sequencing technologies: Methods and goals
-
Shendure, J., Mitra, R. D., Varma, C. & Church, G. M. 2004 Advanced sequencing technologies: methods and goals. Nature Rev. Genet. 5, 335-344.
-
(2004)
Nature Rev. Genet.
, vol.5
, pp. 335-344
-
-
Shendure, J.1
Mitra, R.D.2
Varma, C.3
Church, G.M.4
-
108
-
-
0343320348
-
Comparative painting reveals strong chromosome homology over 80 million years of bird evolution
-
Shetty, S., Griffin, D. K. & Marshall-Graves, J. A. 1999 Comparative painting reveals strong chromosome homology over 80 million years of bird evolution. Chromosome Res. 7, 289-295.
-
(1999)
Chromosome Res.
, vol.7
, pp. 289-295
-
-
Shetty, S.1
Griffin, D.K.2
Marshall-Graves, J.A.3
-
109
-
-
0034774688
-
Sources of incongruence among mammalian mitochondrial sequences: COII, COIII, and ND6 genes are main contributors
-
Shevchuk, N. A. & Allard, M. W. 2001 Sources of incongruence among mammalian mitochondrial sequences: COII, COIII, and ND6 genes are main contributors. Mol. Phylogenet. Evol. 21, 43-54.
-
(2001)
Mol. Phylogenet. Evol.
, vol.21
, pp. 43-54
-
-
Shevchuk, N.A.1
Allard, M.W.2
-
110
-
-
2442677820
-
Comparative genomic analysis of two avian (quail and chicken) MHC regions
-
Shiina, T., Shimizu, S., Hosomichi, K., Kohara, S., Watanabe, S., Hanzawa, K., Beck, S., Kulski, J. K. & Inoko, H. 2004 Comparative genomic analysis of two avian (quail and chicken) MHC regions. J. Immunol. 172, 6751-6763.
-
(2004)
J. Immunol.
, vol.172
, pp. 6751-6763
-
-
Shiina, T.1
Shimizu, S.2
Hosomichi, K.3
Kohara, S.4
Watanabe, S.5
Hanzawa, K.6
Beck, S.7
Kulski, J.K.8
Inoko, H.9
-
112
-
-
0033278654
-
How should species phylogenies be inferred from sequence data?
-
Slowinksi, J. & Page, R. D. M. 1999 How should species phylogenies be inferred from sequence data? Syst. Biol. 48, 814-825.
-
(1999)
Syst. Biol.
, vol.48
, pp. 814-825
-
-
Slowinksi, J.1
Page, R.D.M.2
-
113
-
-
0032784908
-
Interspersed repeats and other mementos of transposable elements in mammalian genomes
-
Smit, A. F. A. 1999 Interspersed repeats and other mementos of transposable elements in mammalian genomes. Curr. Opin. Genet. Dev. 9, 657-663.
-
(1999)
Curr. Opin. Genet. Dev.
, vol.9
, pp. 657-663
-
-
Smit, A.F.A.1
-
114
-
-
0031884718
-
Numts: A challenge for avian systematics and population biology
-
Sorenson, M. D. & Quinn, T. W. 1998 Numts: a challenge for avian systematics and population biology. Auk 115, 214-221.
-
(1998)
Auk
, vol.115
, pp. 214-221
-
-
Sorenson, M.D.1
Quinn, T.W.2
-
115
-
-
0041334091
-
More taxa, more characters: The hoatzin problem is still unresolved
-
Sorenson, M. D., Oneal, E. & Garcia-Moreno, J. 2003 More taxa, more characters: the hoatzin problem is still unresolved. Mol. Biol. Evol. 20, 1484-1499.
-
(2003)
Mol. Biol. Evol.
, vol.20
, pp. 1484-1499
-
-
Sorenson, M.D.1
Oneal, E.2
Garcia-Moreno, J.3
-
116
-
-
0021180099
-
Ratites as oldest offshoot of avian stem-evidence from a crystallin sequences
-
Stapel, S. O., Leunissen, J. A. M., Versteeg, M., Wattel, J. & de Jong, W. W. 1984 Ratites as oldest offshoot of avian stem-evidence from a crystallin sequences. Nature 311, 257-259.
-
(1984)
Nature
, vol.311
, pp. 257-259
-
-
Stapel, S.O.1
Leunissen, J.A.M.2
Versteeg, M.3
Wattel, J.4
De Jong, W.W.5
-
117
-
-
0036213976
-
A comprehensive vertebrate phylogeny using vector representations of protein sequences from whole genomes
-
Stuart, G. W., Moffett, K. & Leader, J. J. 2002 A comprehensive vertebrate phylogeny using vector representations of protein sequences from whole genomes. Mol. Biol. Evol. 19, 554-562.
-
(2002)
Mol. Biol. Evol.
, vol.19
, pp. 554-562
-
-
Stuart, G.W.1
Moffett, K.2
Leader, J.J.3
-
118
-
-
0041465867
-
Comparative analyses of multispecies sequences from targeted genomic regions
-
Thomas, J. W. et al. 2003 Comparative analyses of multispecies sequences from targeted genomic regions. Nature 424, 788-793.
-
(2003)
Nature
, vol.424
, pp. 788-793
-
-
Thomas, J.W.1
-
119
-
-
0034000984
-
The early history of modern birds inferred from DNA sequences of nuclear and mitochondrial ribosomal genes
-
van Tuinen, M., Sibley, C. G. & Hedges, S. B. 2000 The early history of modern birds inferred from DNA sequences of nuclear and mitochondrial ribosomal genes. Mol. Biol. Evol. 17, 451-457.
-
(2000)
Mol. Biol. Evol.
, vol.17
, pp. 451-457
-
-
Van Tuinen, M.1
Sibley, C.G.2
Hedges, S.B.3
-
120
-
-
0036841106
-
Evolutionary dynamics of intron size, genome size, and physiological correlates in archosaurs
-
Waltari, E. & Edwards, S. V. 2002 Evolutionary dynamics of intron size, genome size, and physiological correlates in archosaurs. Am. Nat. 160, 539-552.
-
(2002)
Am. Nat.
, vol.160
, pp. 539-552
-
-
Waltari, E.1
Edwards, S.V.2
-
121
-
-
0036591885
-
SINEs and LINEs: The art of biting the hand that feeds you
-
Weiner, A. M. 2002 SINEs and LINEs: the art of biting the hand that feeds you. Curr. Opin. Gen. Dev. 14, 343-350.
-
(2002)
Curr. Opin. Gen. Dev.
, vol.14
, pp. 343-350
-
-
Weiner, A.M.1
-
122
-
-
0022555861
-
Nonviral retroposons: Genes, pseudogenes, and transposable elements generated by the reverse flow of genetic information
-
Weiner, A. M., Deininger, P. L. & Efstratiadis, A. 1986 Nonviral retroposons: genes, pseudogenes, and transposable elements generated by the reverse flow of genetic information. Annu. Rev. Biochem. 55, 631-661.
-
(1986)
Annu. Rev. Biochem.
, vol.55
, pp. 631-661
-
-
Weiner, A.M.1
Deininger, P.L.2
Efstratiadis, A.3
-
123
-
-
32644470429
-
The repetitive landscape of the chicken genome
-
Wicker, T. et al. 2004 The repetitive landscape of the chicken genome. Genome Res. 14, 000-000.
-
(2004)
Genome Res.
, vol.14
-
-
Wicker, T.1
-
124
-
-
0032028624
-
On the best evolutionary rate for phylogenetic analysis
-
Yang, Z. 1998 On the best evolutionary rate for phylogenetic analysis. Syst. Biol. 47, 125-133.
-
(1998)
Syst. Biol.
, vol.47
, pp. 125-133
-
-
Yang, Z.1
-
125
-
-
0031172691
-
Construction and characterization of a large-fragment chicken bacterial artificial chromosome library
-
Zimmer, R. & Verrinder Gibbins, A. M. 1997 Construction and characterization of a large-fragment chicken bacterial artificial chromosome library. Genomics 42, 217-226.
-
(1997)
Genomics
, vol.42
, pp. 217-226
-
-
Zimmer, R.1
Verrinder Gibbins, A.M.2
|