-
1
-
-
0032978833
-
Positive selection drives the evolution of the ACp29AB accessory gland protein in Drosophila
-
Aguadé M. 1999. Positive selection drives the evolution of the ACp29AB accessory gland protein in Drosophila. Genetics 152:543-51
-
(1999)
Genetics
, vol.152
, pp. 543-551
-
-
Aguadé, M.1
-
2
-
-
0016355478
-
A new look at the statistical model identification
-
Akaike H. 1974. A new look at the statistical model identification. IEEE Trans. Autom. Contr. 19:716-23
-
(1974)
IEEE Trans. Autom. Contr.
, vol.19
, pp. 716-723
-
-
Akaike, H.1
-
3
-
-
0000363076
-
Exchangeability and related topics
-
ed. A Dold, B Eckmann. Berlin: Springer
-
Aldous DJ. 1985. Exchangeability and related topics. In Ecole d'Ete de Probabilites de Saint-Flour XII - 1983, ed. A Dold, B Eckmann, pp. 1-198. Berlin: Springer
-
(1985)
Ecole d'Ete de Probabilites de Saint-Flour XII - 1983
, pp. 1-198
-
-
Aldous, D.J.1
-
4
-
-
80054744521
-
Pleistocene speciation and the mitochondrial DNA clock
-
Arbogast BS, Slowinski JB. 1998. Pleistocene speciation and the mitochondrial DNA clock. Science 282:1955a
-
(1998)
Science
, vol.282
-
-
Arbogast, B.S.1
Slowinski, J.B.2
-
5
-
-
0034439682
-
Molecular estimates of primate divergences and new hypotheses for primate dispersal and the origin of modern humans
-
Arnason U, Gullberg A, Burguete AS, Janke A. 2000. Molecular estimates of primate divergences and new hypotheses for primate dispersal and the origin of modern humans. Hereditas 133:217-28
-
(2000)
Hereditas
, vol.133
, pp. 217-228
-
-
Arnason, U.1
Gullberg, A.2
Burguete, A.S.3
Janke, A.4
-
6
-
-
0032434102
-
Molecular timing of primate divergences as estimated by two nonprimate calibration points
-
Arnason U, Gullberg A, Janke A. 1998. Molecular timing of primate divergences as estimated by two nonprimate calibration points. J. Mol. Evol. 47:718-27
-
(1998)
J. Mol. Evol.
, vol.47
, pp. 718-727
-
-
Arnason, U.1
Gullberg, A.2
Janke, A.3
-
7
-
-
0030468869
-
Pattern and timing of evolutionary divergences among hominoids based on analyses of complete mtDNAs
-
Arnason U, Gullberg A, Janke A, Xu X. 1996. Pattern and timing of evolutionary divergences among hominoids based on analyses of complete mtDNAs. J. Mol. Evol. 43:650-61
-
(1996)
J. Mol. Evol.
, vol.43
, pp. 650-661
-
-
Arnason, U.1
Gullberg, A.2
Janke, A.3
Xu, X.4
-
8
-
-
0026323829
-
Ten unorthodox perspectives on evolution prompted by comparative population genetic findings on mitochondrial DNA
-
Avise JC. 1991. Ten unorthodox perspectives on evolution prompted by comparative population genetic findings on mitochondrial DNA. Annu. Rev. Genet. 25:45-69
-
(1991)
Annu. Rev. Genet.
, vol.25
, pp. 45-69
-
-
Avise, J.C.1
-
9
-
-
0023496815
-
Intraspecific phylogeography: The mitochondrial DNA bridge between population genetics and systematics
-
Avise JC, Arnold J, Ball RM, Bermingham E, Lamb T, et al. 1987. Intraspecific phylogeography: The mitochondrial DNA bridge between population genetics and systematics. Annu. Rev. Ecol. Syst. 18:489-522
-
(1987)
Annu. Rev. Ecol. Syst.
, vol.18
, pp. 489-522
-
-
Avise, J.C.1
Arnold, J.2
Ball, R.M.3
Bermingham, E.4
Lamb, T.5
-
10
-
-
0033601201
-
Linkage disequilibrium and recombination in hominid mitochondrial DNA
-
Awadalla P, Eyre-Walker A, Smith JM. 1999. Linkage disequilibrium and recombination in hominid mitochondrial DNA. Science 286:2524-25
-
(1999)
Science
, vol.286
, pp. 2524-2525
-
-
Awadalla, P.1
Eyre-Walker, A.2
Smith, J.M.3
-
11
-
-
0030812104
-
Vagaries of the molecular clock
-
Ayala FJ. 1997. Vagaries of the molecular clock. Proc. Natl. Acad. Sci. USA 94:7776-83
-
(1997)
Proc. Natl. Acad. Sci. USA
, vol.94
, pp. 7776-7783
-
-
Ayala, F.J.1
-
12
-
-
0032482931
-
Age and rate of diversification of the Hawaiian silversword alliance
-
Baldwin B, Sanderson M. 1998. Age and rate of diversification of the Hawaiian silversword alliance. Proc. Natl. Acad. Sci. USA 95:9402-6
-
(1998)
Proc. Natl. Acad. Sci. USA
, vol.95
, pp. 9402-9406
-
-
Baldwin, B.1
Sanderson, M.2
-
14
-
-
0026748431
-
Vicariance biogeography in the Pleistocene and speciation in North American wood warblers: A test of Mengel's model
-
Bermingham E, Rohwer S, Freeman S, Wood C. 1992. Vicariance biogeography in the Pleistocene and speciation in North American wood warblers: A test of Mengel's model. Proc. Natl. Acad. Sci. USA 89:6624-28
-
(1992)
Proc. Natl. Acad. Sci. USA
, vol.89
, pp. 6624-6628
-
-
Bermingham, E.1
Rohwer, S.2
Freeman, S.3
Wood, C.4
-
15
-
-
0014317518
-
A migration matrix model for the study of random genetic drift
-
Bodmer W, Cavalli-Sforza L. 1968. A migration matrix model for the study of random genetic drift. Genetics 59:565-92
-
(1968)
Genetics
, vol.59
, pp. 565-592
-
-
Bodmer, W.1
Cavalli-Sforza, L.2
-
16
-
-
0032514706
-
Testing the Cambrian explosion hypothesis by using a molecular dating technique
-
Bromham L, Rambaut A, Fortey R, Cooper A, Penny D. 1998. Testing the Cambrian explosion hypothesis by using a molecular dating technique. Proc. Natl. Acad. Sci. USA 95:12386-89
-
(1998)
Proc. Natl. Acad. Sci. USA
, vol.95
, pp. 12386-12389
-
-
Bromham, L.1
Rambaut, A.2
Fortey, R.3
Cooper, A.4
Penny, D.5
-
18
-
-
0020328686
-
Mitochondrial DNA sequences of primates: Tempo and mode of evolution
-
Brown W, Prager EM, Wang A, Wilson AC. 1982. Mitochondrial DNA sequences of primates: Tempo and mode of evolution. J. Mol. Evol. 18:225-39
-
(1982)
J. Mol. Evol.
, vol.18
, pp. 225-239
-
-
Brown, W.1
Prager, E.M.2
Wang, A.3
Wilson, A.C.4
-
19
-
-
0035527383
-
Exploring among-site rate variation models in a maximum likelihood framework using empirical data: Effects of model assumptions on estimates of topology, branch lengths and bootstrap support
-
Buckley T, Simon C, Chamb G. 2001. Exploring among-site rate variation models in a maximum likelihood framework using empirical data: Effects of model assumptions on estimates of topology, branch lengths and bootstrap support. Syst. Biol. 50:67-86
-
(2001)
Syst. Biol.
, vol.50
, pp. 67-86
-
-
Buckley, T.1
Simon, C.2
Chamb, G.3
-
20
-
-
0023163377
-
Mitochondrial DNA and human evolution
-
Cann RL, Stoneking M, Wilson AC. 1987. Mitochondrial DNA and human evolution. Nature 325:31-36
-
(1987)
Nature
, vol.325
, pp. 31-36
-
-
Cann, R.L.1
Stoneking, M.2
Wilson, A.C.3
-
21
-
-
0001344844
-
The latent roots of certain Markov chains arising in genetics: A new approach. I. Haploid models
-
Cannings C. 1974. The latent roots of certain Markov chains arising in genetics: A new approach. I. Haploid models. Adv. Appl. Prob. 6:260-90
-
(1974)
Adv. Appl. Prob.
, vol.6
, pp. 260-290
-
-
Cannings, C.1
-
23
-
-
0035130163
-
Genomic divergences between humans and other hominoids and the effective population size of the common ancestor of humans and chimpanzees
-
Chen FC, Li WH. 2001. Genomic divergences between humans and other hominoids and the effective population size of the common ancestor of humans and chimpanzees. Am. J. Hum. Genet. 68:444-56
-
(2001)
Am. J. Hum. Genet.
, vol.68
, pp. 444-456
-
-
Chen, F.C.1
Li, W.H.2
-
24
-
-
0030621127
-
Mass survival of birds across the Cretaceous-Tertiary boundary: Molecular evidence
-
Cooper A, Penny D. 1997. Mass survival of birds across the Cretaceous-Tertiary boundary: Molecular evidence. Science 275:1109-13
-
(1997)
Science
, vol.275
, pp. 1109-1113
-
-
Cooper, A.1
Penny, D.2
-
25
-
-
0029559462
-
Coalescents and genealogical structure under neutrality
-
Donnelly P, Tavaré S. 1995. Coalescents and genealogical structure under neutrality. Annu. Rev. Genet. 29:401-21
-
(1995)
Annu. Rev. Genet.
, vol.29
, pp. 401-421
-
-
Donnelly, P.1
Tavaré, S.2
-
26
-
-
0030023247
-
Determining divergence times of the major kingdoms of living organisms with a protein clock
-
Doolittle R, Feng D, Tsang S, Cho G, Little E. 1996. Determining divergence times of the major kingdoms of living organisms with a protein clock. Science 271:470-77
-
(1996)
Science
, vol.271
, pp. 470-477
-
-
Doolittle, R.1
Feng, D.2
Tsang, S.3
Cho, G.4
Little, E.5
-
27
-
-
0034496840
-
Perspective: Gene divergence, population divergence, and the variance in coalescence time in phylogeographic studies
-
Edwards SV, Beerli P. 2000. Perspective: Gene divergence, population divergence, and the variance in coalescence time in phylogeographic studies. Evolution 54:1839-54
-
(2000)
Evolution
, vol.54
, pp. 1839-1854
-
-
Edwards, S.V.1
Beerli, P.2
-
28
-
-
0030979507
-
Ancestral polymorphism of Mhc class II genes in mice: Implications for balancing selection and the mammalian molecular clock
-
Edwards SV, Chesnut K, Satta Y, Wakeland EK. 1997. Ancestral polymorphism of Mhc class II genes in mice: Implications for balancing selection and the mammalian molecular clock. Genetics 146:655-68
-
(1997)
Genetics
, vol.146
, pp. 655-668
-
-
Edwards, S.V.1
Chesnut, K.2
Satta, Y.3
Wakeland, E.K.4
-
29
-
-
0034564097
-
Microsatellite mutations in the germ line: Implications for evolutionary inference
-
Ellegren H. 2000. Microsatellite mutations in the germ line: Implications for evolutionary inference. Trends Genet. 16:551-58
-
(2000)
Trends Genet.
, vol.16
, pp. 551-558
-
-
Ellegren, H.1
-
31
-
-
0024181337
-
Phylogenies and quantitative characters
-
Felsenstein J. 1988. Phylogenies and quantitative characters. Annu. Rev. Ecol. Syst. 19:445-71
-
(1988)
Annu. Rev. Ecol. Syst.
, vol.19
, pp. 445-471
-
-
Felsenstein, J.1
-
32
-
-
0023783671
-
MHC polymorphism predating speciation
-
Figueroa F, Gunther E, Klein J. 1988. MHC polymorphism predating speciation. Nature 335:265-67
-
(1988)
Nature
, vol.335
, pp. 265-267
-
-
Figueroa, F.1
Gunther, E.2
Klein, J.3
-
34
-
-
0029391126
-
Statistical properties of segregating sites
-
Fu X-Y. 1995. Statistical properties of segregating sites. Theoret. Pop. Biol. 48:172-97
-
(1995)
Theoret. Pop. Biol.
, vol.48
, pp. 172-197
-
-
Fu, X.-Y.1
-
35
-
-
0028887457
-
Success of maximum likelihood in the four-taxon case
-
Gaut B, Lewis P. 1995. Success of maximum likelihood in the four-taxon case. Mol. Biol. Evol. 12:152-62
-
(1995)
Mol. Biol. Evol.
, vol.12
, pp. 152-162
-
-
Gaut, B.1
Lewis, P.2
-
37
-
-
0018784753
-
Are evolutionary rates really variable?
-
Gillespie JH, Langley CH. 1979. Are evolutionary rates really variable? J. Mol. Evol. 13:27-34
-
(1979)
J. Mol. Evol.
, vol.13
, pp. 27-34
-
-
Gillespie, J.H.1
Langley, C.H.2
-
39
-
-
0027526039
-
Statistical tests of models of DNA substitution
-
Goldman N. 1993. Statistical tests of models of DNA substitution. J. Mol. Evol. 36:182-98
-
(1993)
J. Mol. Evol.
, vol.36
, pp. 182-198
-
-
Goldman, N.1
-
41
-
-
84972539388
-
Ancestral inference in population genetics
-
Griffiths RC, Tavaré S. 1994. Ancestral inference in population genetics. Stat. Sci. 9:307-19
-
(1994)
Stat. Sci.
, vol.9
, pp. 307-319
-
-
Griffiths, R.C.1
Tavaré, S.2
-
42
-
-
0001129760
-
Monte Carlo inference methods in population genetics
-
Griffiths RC,Tavaré S. 1996. Monte Carlo inference methods in population genetics. Math. Comput. Model. 23:141-58
-
(1996)
Math. Comput. Model
, vol.23
, pp. 141-158
-
-
Griffiths, R.C.1
Tavaré, S.2
-
43
-
-
0035576285
-
Prospects for nuclear gene phylogeography
-
Hare M. 2001. Prospects for nuclear gene phylogeography. Trends Ecol. Evol. 16:700-6
-
(2001)
Trends Ecol. Evol.
, vol.16
, pp. 700-706
-
-
Hare, M.1
-
44
-
-
0032539701
-
Genetic traces of ancient demography
-
Harpending HC, Batzer MA, Gurven M, Jorde LB, Rogers AR, Sherry ST. 1998. Genetic traces of ancient demography. Proc. Natl. Acad. Sci. USA 95:1961-67
-
(1998)
Proc. Natl. Acad. Sci. USA
, vol.95
, pp. 1961-1967
-
-
Harpending, H.C.1
Batzer, M.A.2
Gurven, M.3
Jorde, L.B.4
Rogers, A.R.5
Sherry, S.T.6
-
45
-
-
0022376704
-
Dating of the human-ape splitting by a molecular clock of mitochondrial DNA
-
Hasegawa M, Kishino H, Yano T. 1985. Dating of the human-ape splitting by a molecular clock of mitochondrial DNA. J. Mol. Evol. 21:160-74
-
(1985)
J. Mol. Evol.
, vol.21
, pp. 160-174
-
-
Hasegawa, M.1
Kishino, H.2
Yano, T.3
-
46
-
-
1642534172
-
A genomic timescale for the origin of eukaryotes
-
Hedges SB, Chen H, Kumar S, Wang DY, Thompson AS, Watanabe H. 2001. A genomic timescale for the origin of eukaryotes. BMC Evol. Biol. 1:4
-
(2001)
BMC Evol. Biol.
, vol.1
, pp. 4
-
-
Hedges, S.B.1
Chen, H.2
Kumar, S.3
Wang, D.Y.4
Thompson, A.S.5
Watanabe, H.6
-
47
-
-
0029669270
-
Continental breakup and the ordinal diversification of birds and mammals
-
Hedges SB, Parker PH, Sibley CG, Kumar S. 1996. Continental breakup and the ordinal diversification of birds and mammals. Nature 381:226-29
-
(1996)
Nature
, vol.381
, pp. 226-229
-
-
Hedges, S.B.1
Parker, P.H.2
Sibley, C.G.3
Kumar, S.4
-
49
-
-
0026113372
-
A multi-dimensional coalescent process applied to multi-allelic selection models and migration models
-
Hey J. 1991. A multi-dimensional coalescent process applied to multi-allelic selection models and migration models. Theoret. Pop. Biol. 39:30-48
-
(1991)
Theoret. Pop. Biol.
, vol.39
, pp. 30-48
-
-
Hey, J.1
-
50
-
-
0000704795
-
Applications of molecular systematics: The state of the field and a look to the future
-
ed. D Hillis, C Moritz, BK Mable. Sunderland, MA: Sinauer
-
Hillis DM, Mable BK, Moritz C. 1996. Applications of molecular systematics: The state of the field and a look to the future. In Molecular Systematics, ed. D Hillis, C Moritz, BK Mable, pp. 515-43. Sunderland, MA: Sinauer
-
(1996)
Molecular Systematics
, pp. 515-543
-
-
Hillis, D.M.1
Mable, B.K.2
Moritz, C.3
-
51
-
-
0020744702
-
Properties of a neutral allele model with intragenic recombination
-
Hudson RR. 1983a. Properties of a neutral allele model with intragenic recombination. Theoret. Pop. Biol. 23:183-201
-
(1983)
Theoret. Pop. Biol.
, vol.23
, pp. 183-201
-
-
Hudson, R.R.1
-
52
-
-
0000424609
-
Testing the constant-rate neutral allele model with protein sequence data
-
Hudson RR. 1983b. Testing the constant-rate neutral allele model with protein sequence data. Evolution 37:203-17
-
(1983)
Evolution
, vol.37
, pp. 203-217
-
-
Hudson, R.R.1
-
53
-
-
0001935493
-
Gene genealogies and the coalescent process
-
Hudson RR. 1990. Gene genealogies and the coalescent process. Oxford Surv. Evol. Biol. 7:1-44
-
(1990)
Oxford Surv. Evol. Biol.
, vol.7
, pp. 1-44
-
-
Hudson, R.R.1
-
54
-
-
0022211482
-
Statistical properties of the number of recombination events in the history of a sample of DNA sequences
-
Hudson RR, Kaplan NL. 1985. Statistical properties of the number of recombination events in the history of a sample of DNA sequences. Genetics 111:147-64
-
(1985)
Genetics
, vol.111
, pp. 147-164
-
-
Hudson, R.R.1
Kaplan, N.L.2
-
55
-
-
0023339852
-
A test of neutral molecular evolution based on nucleotide data
-
Hudson RR, Kreitman M, Aguadé M. 1987. A test of neutral molecular evolution based on nucleotide data. Genetics 116:153-59
-
(1987)
Genetics
, vol.116
, pp. 153-159
-
-
Hudson, R.R.1
Kreitman, M.2
Aguadé, M.3
-
56
-
-
0034077901
-
A compound Poisson process for relaxing the molecular clock
-
Huelsenbeck JP, Larget B, Swofford D. 2000. A compound Poisson process for relaxing the molecular clock. Genetics 154:1879-92
-
(2000)
Genetics
, vol.154
, pp. 1879-1892
-
-
Huelsenbeck, J.P.1
Larget, B.2
Swofford, D.3
-
57
-
-
0030902563
-
Phylogenetic methods come of age: Testing hypotheses in an evolutionary context
-
Huelsenbeck JP, Rannala B. 1997. Phylogenetic methods come of age: Testing hypotheses in an evolutionary context. Science 276:227-32
-
(1997)
Science
, vol.276
, pp. 227-232
-
-
Huelsenbeck, J.P.1
Rannala, B.2
-
58
-
-
0034849408
-
MRBAYES: Bayesian inference of phylogenetic trees
-
Huelsenbeck JP, Ronquist F. 2001. MRBAYES: Bayesian inference of phylogenetic trees. Bioinformatics 17:754-55
-
(2001)
Bioinformatics
, vol.17
, pp. 754-755
-
-
Huelsenbeck, J.P.1
Ronquist, F.2
-
59
-
-
0035861456
-
Bayesian inference of phylogeny and its impact on evolutionary biology
-
Huelsenbeck JP, Ronquist F, Nielsen R, Bollback P. 2001. Bayesian inference of phylogeny and its impact on evolutionary biology. Science 294:2310-14
-
(2001)
Science
, vol.294
, pp. 2310-2314
-
-
Huelsenbeck, J.P.1
Ronquist, F.2
Nielsen, R.3
Bollback, P.4
-
60
-
-
0031736552
-
Sex biases in the mutation rate
-
Hurst L, Ellegren H. 1998. Sex biases in the mutation rate. Trends Genet. 14:446-52
-
(1998)
Trends Genet.
, vol.14
, pp. 446-452
-
-
Hurst, L.1
Ellegren, H.2
-
61
-
-
0000732090
-
Evolution of protein molecules
-
ed. HN Munro. New York: Academic
-
Jukes TH, Cantor CR. 1969. Evolution of protein molecules. In Mammalian Protein Metabolism, ed. HN Munro, pp. 21-132. New York: Academic
-
(1969)
Mammalian Protein Metabolism
, pp. 21-132
-
-
Jukes, T.H.1
Cantor, C.R.2
-
62
-
-
0035844029
-
African origin of modern humans in East Asia: A tale of 12,000 Y chromosomes
-
Ke Y, Su B, Song X, Lu D, Chen L, et al. 2001. African origin of modern humans in East Asia: A tale of 12,000 Y chromosomes. Science 292:1151-53
-
(2001)
Science
, vol.292
, pp. 1151-1153
-
-
Ke, Y.1
Su, B.2
Song, X.3
Lu, D.4
Chen, L.5
-
63
-
-
75949146309
-
The number of alleles that can be maintained in a finite population
-
Kimura M, Crow JF. 1964. The number of alleles that can be maintained in a finite population. Genetics 49:725-38
-
(1964)
Genetics
, vol.49
, pp. 725-738
-
-
Kimura, M.1
Crow, J.F.2
-
64
-
-
0001358930
-
The stepping stone model of population structure and the decrease of genetic correlation with distance
-
Kimura M, Weiss GH. 1964. The stepping stone model of population structure and the decrease of genetic correlation with distance. Genetics 49:561-76
-
(1964)
Genetics
, vol.49
, pp. 561-576
-
-
Kimura, M.1
Weiss, G.H.2
-
66
-
-
0002743467
-
Exchangeability and the evolution of large populations
-
ed. G Koch, F Spizzichino. Amsterdam: North-Holland
-
Kingman JFC. 1982b. Exchangeability and the evolution of large populations. In Exchangeability in Probability and Statistics, ed. G Koch, F Spizzichino, pp. 97-112. Amsterdam: North-Holland
-
(1982)
Exchangeability in Probability and Statistics
, pp. 97-112
-
-
Kingman, J.F.C.1
-
67
-
-
0002556819
-
On the genealogy of large populations
-
Kingman JFC. 1982c. On the genealogy of large populations. J. Appl. Prob. 19A:27-43
-
(1982)
J. Appl. Prob.
, vol.19 A
, pp. 27-43
-
-
Kingman, J.F.C.1
-
68
-
-
0030773836
-
The importance of recent ice ages in speciation: A failed paradigm
-
Klicka J, Zink RM. 1997. The importance of recent ice ages in speciation: A failed paradigm. Science 277:1666-69
-
(1997)
Science
, vol.277
, pp. 1666-1669
-
-
Klicka, J.1
Zink, R.M.2
-
69
-
-
0034536562
-
The population genetics of the origin and divergence of the Drosophila simulans complex species
-
Kliman RM, Andolfatto P, Coyne JA, Depaulis F, Kreitman M, et al. 2000. The population genetics of the origin and divergence of the Drosophila simulans complex species. Genetics 156:1913-31
-
(2000)
Genetics
, vol.156
, pp. 1913-1931
-
-
Kliman, R.M.1
Andolfatto, P.2
Coyne, J.A.3
Depaulis, F.4
Kreitman, M.5
-
70
-
-
0033451968
-
Insight into speciation from historical demography in the phytophagous beetle genus Ophraella
-
Knowles LL, Futuyma DJ, Eanes WF, Rannala B. 1999. Insight into speciation from historical demography in the phytophagous beetle genus Ophraella. Evolution 53:1846-56
-
(1999)
Evolution
, vol.53
, pp. 1846-1856
-
-
Knowles, L.L.1
Futuyma, D.J.2
Eanes, W.F.3
Rannala, B.4
-
71
-
-
0029027992
-
Estimating effective population size and mutation rate from sequence data using Metropolis-Hastings sampling
-
Kuhner MK, Yamato J, Felsenstein J. 1995. Estimating effective population size and mutation rate from sequence data using Metropolis-Hastings sampling. Genetics 140:1421-30
-
(1995)
Genetics
, vol.140
, pp. 1421-1430
-
-
Kuhner, M.K.1
Yamato, J.2
Felsenstein, J.3
-
72
-
-
0031835126
-
Maximum likelihood estimation of population growth rates based on the coalescent
-
Kuhner MK, Yamato J, Felsenstein J. 1998. Maximum likelihood estimation of population growth rates based on the coalescent. Genetics 149:429-34
-
(1998)
Genetics
, vol.149
, pp. 429-434
-
-
Kuhner, M.K.1
Yamato, J.2
Felsenstein, J.3
-
73
-
-
0023783672
-
HLA-A and B polymorphisms predate the divergence of humans and chimpanzees
-
Lawlor DA, Ward FE, Ennis PD, Jackson AP, Parham P. 1988. HLA-A and B polymorphisms predate the divergence of humans and chimpanzees. Nature 335:268-71
-
(1988)
Nature
, vol.335
, pp. 268-271
-
-
Lawlor, D.A.1
Ward, F.E.2
Ennis, P.D.3
Jackson, A.P.4
Parham, P.5
-
74
-
-
0012166282
-
Positive selection is a general phenomenon in the evolution of abalone sperm lysin
-
Lee Y, Ohta T, Vacquier VD. 1995. Positive selection is a general phenomenon in the evolution of abalone sperm lysin. Mol. Biol. Evol. 6:424-35
-
(1995)
Mol. Biol. Evol.
, vol.6
, pp. 424-435
-
-
Lee, Y.1
Ohta, T.2
Vacquier, V.D.3
-
75
-
-
0017268602
-
Distribution of nucleotide difference between two randomly chosen cistrons in a subdivided population: The finite island model
-
Li W-H. 1976. Distribution of nucleotide difference between two randomly chosen cistrons in a subdivided population: The finite island model. Theoret. Pop. Biol. 10:303-8
-
(1976)
Theoret. Pop. Biol.
, vol.10
, pp. 303-308
-
-
Li, W.-H.1
-
76
-
-
0003421005
-
-
Sunderland, MA: Sinauer. 432 pp.
-
Li W-H. 1997. Molecular Evolution. Sunderland, MA: Sinauer. 432 pp.
-
(1997)
Molecular Evolution
-
-
Li, W.-H.1
-
77
-
-
0033178244
-
Paleodemography of the Drosophila melanogaster subgroup: Application of the maximum likelihood method
-
Li YJ, Satta Y, Takahata N. 1999. Paleodemography of the Drosophila melanogaster subgroup: Application of the maximum likelihood method. Genes Genet. Syst. 74:117-27
-
(1999)
Genes Genet. Syst.
, vol.74
, pp. 117-127
-
-
Li, Y.J.1
Satta, Y.2
Takahata, N.3
-
78
-
-
0036215045
-
Inferring the history of speciation from multilocus DNA sequence data: The case of Drosophila pseudoobscura and close relatives
-
Machado CA, Kliman RM, Markert JA, Hey J. 2002. Inferring the history of speciation from multilocus DNA sequence data: The case of Drosophila pseudoobscura and close relatives. Mol. Biol. Evol. 19:472-88
-
(2002)
Mol. Biol. Evol.
, vol.19
, pp. 472-488
-
-
Machado, C.A.1
Kliman, R.M.2
Markert, J.A.3
Hey, J.4
-
79
-
-
0031504952
-
Gene trees in species trees
-
Maddison WP. 1997. Gene trees in species trees. Syst. Biol. 46:523-36
-
(1997)
Syst. Biol.
, vol.46
, pp. 523-536
-
-
Maddison, W.P.1
-
80
-
-
0027308854
-
Body size, metabolic rate, generation time and the molecular clock
-
Martin AP, Palumbi SR. 1993. Body size, metabolic rate, generation time and the molecular clock. Proc. Natl. Acad. Sci. USA 90:4087-91
-
(1993)
Proc. Natl. Acad. Sci. USA
, vol.90
, pp. 4087-4091
-
-
Martin, A.P.1
Palumbi, S.R.2
-
81
-
-
0024077349
-
Nucleotide sequences of chimpanzee MHC class I alleles: Evidence for a trans-species mode of evolution
-
Mayer WE, Jonker J, Klein D, Ivanyi P, van Seventer G, Klein J. 1988. Nucleotide sequences of chimpanzee MHC class I alleles: Evidence for a trans-species mode of evolution. EMBO J. 7:2765-74
-
(1988)
EMBO J.
, vol.7
, pp. 2765-2774
-
-
Mayer, W.E.1
Jonker, J.2
Klein, D.3
Ivanyi, P.4
Van Seventer, G.5
Klein, J.6
-
83
-
-
0030033286
-
Positive selection and sequence rearrangements generate extensive polymorphism in the gamete recognition protein bindin
-
Metz EC, Palumbi SR. 1996. Positive selection and sequence rearrangements generate extensive polymorphism in the gamete recognition protein bindin. Mol. Biol. Evol. 13:397-406
-
(1996)
Mol. Biol. Evol.
, vol.13
, pp. 397-406
-
-
Metz, E.C.1
Palumbi, S.R.2
-
84
-
-
84949558457
-
Random processes in genetics
-
Moran PAP. 1958. Random processes in genetics. Proc. Camb. Phil. Soc. 54:60-71
-
(1958)
Proc. Camb. Phil. Soc.
, vol.54
, pp. 60-71
-
-
Moran, P.A.P.1
-
85
-
-
0033977175
-
A new method for characterizing replacement rate variation in molecular sequences: Application of the Fourier and Wavelet models to Drosophila and mammalian proteins
-
Morozov P, Sitnikova T, Churchhill G, Ayala F, Rzhetsky A. 2000. A new method for characterizing replacement rate variation in molecular sequences: Application of the Fourier and Wavelet models to Drosophila and mammalian proteins. Genetics 154:381-95
-
(2000)
Genetics
, vol.154
, pp. 381-395
-
-
Morozov, P.1
Sitnikova, T.2
Churchhill, G.3
Ayala, F.4
Rzhetsky, A.5
-
86
-
-
0000655268
-
Genetic distance between populations
-
Nei M. 1972. Genetic distance between populations. Am. Nat. 105:385-98
-
(1972)
Am. Nat.
, vol.105
, pp. 385-398
-
-
Nei, M.1
-
87
-
-
0005814023
-
Mathematical model for studying genetic variation in terms of restriction endonucleases
-
Nei M, Li W-H. 1979. Mathematical model for studying genetic variation in terms of restriction endonucleases. Proc. Natl. Acad. Sci. USA 76:5269-73
-
(1979)
Proc. Natl. Acad. Sci. USA
, vol.76
, pp. 5269-5273
-
-
Nei, M.1
Li, W.-H.2
-
88
-
-
0027237436
-
Effective population size, genetic diversity, and coalescence time in subdivided populations
-
Nei M, Takahata N. 1993. Effective population size, genetic diversity, and coalescence time in subdivided populations. J. Mol. Evol. 37:240-44
-
(1993)
J. Mol. Evol.
, vol.37
, pp. 240-244
-
-
Nei, M.1
Takahata, N.2
-
89
-
-
0032051440
-
Maximum likelihood estimation of population divergence times and population phylogenies under the infinite sites model
-
Nielsen R. 1998. Maximum likelihood estimation of population divergence times and population phylogenies under the infinite sites model. Theor. Pop. Biol. 53:143-51
-
(1998)
Theor. Pop. Biol.
, vol.53
, pp. 143-151
-
-
Nielsen, R.1
-
90
-
-
0031879154
-
Maximum likelihood estimation of population divergence times and population phylogeny in models without mutation
-
Nielsen R, Mountain JL, Huelsenbeck JP, Slatkin M. 1998. Maximum likelihood estimation of population divergence times and population phylogeny in models without mutation. Evolution 52:669-77
-
(1998)
Evolution
, vol.52
, pp. 669-677
-
-
Nielsen, R.1
Mountain, J.L.2
Huelsenbeck, J.P.3
Slatkin, M.4
-
91
-
-
0034967295
-
Distinguishing migration from isolation: A Markov Chain Monte Carlo approach
-
Nielsen R, Wakeley J. 2001. Distinguishing migration from isolation: A Markov Chain Monte Carlo approach. Genetics 158:885-96
-
(2001)
Genetics
, vol.158
, pp. 885-896
-
-
Nielsen, R.1
Wakeley, J.2
-
92
-
-
0000913208
-
Coalescent theory
-
ed. DJ Balding, MJ Bishop, C Cannings. Chichester, UK: Wiley
-
Nordborg M. 2001. Coalescent theory. In Handbook of Statistical Genetics, ed. DJ Balding, MJ Bishop, C Cannings. Chichester, UK: Wiley
-
(2001)
Handbook of Statistical Genetics
-
-
Nordborg, M.1
-
93
-
-
0023514080
-
Evolution in bacteria: Evidence for a universal substitution rate in cellular genomes
-
Ochman H, Wilson AC. 1987. Evolution in bacteria: Evidence for a universal substitution rate in cellular genomes. J. Mol. Evol. 26:74-86
-
(1987)
J. Mol. Evol.
, vol.26
, pp. 74-86
-
-
Ochman, H.1
Wilson, A.C.2
-
94
-
-
0023822631
-
The relationships between gene trees and species trees
-
Pamilo P, Nei M. 1988. The relationships between gene trees and species trees. Mol. Biol. Evol. 5:568-83
-
(1988)
Mol. Biol. Evol.
, vol.5
, pp. 568-583
-
-
Pamilo, P.1
Nei, M.2
-
95
-
-
0034754533
-
Patterns of DNA sequence variation suggest the recent action of positive selection in the janus-ocnus region of Drosophila simulans
-
Parsch J, Meiklejohn CD, Hartl DL. 2001. Patterns of DNA sequence variation suggest the recent action of positive selection in the janus-ocnus region of Drosophila simulans. Genetics 159:647-57
-
(2001)
Genetics
, vol.159
, pp. 647-657
-
-
Parsch, J.1
Meiklejohn, C.D.2
Hartl, D.L.3
-
96
-
-
0029861446
-
Optimal sequencing strategies for surveying molecular genetic diversity
-
Pluzhnikov A, Donnelly P. 1996. Optimal sequencing strategies for surveying molecular genetic diversity. Genetics 144:1247-62
-
(1996)
Genetics
, vol.144
, pp. 1247-1262
-
-
Pluzhnikov, A.1
Donnelly, P.2
-
97
-
-
0031773680
-
MODELTEST: Testing the model of DNA substitution
-
Posada D, Crandall KA. 1998. MODELTEST: Testing the model of DNA substitution. Bioinformatics 14:817-18
-
(1998)
Bioinformatics
, vol.14
, pp. 817-818
-
-
Posada, D.1
Crandall, K.A.2
-
98
-
-
0035527410
-
Selecting the best-fit model of nucleotide substitution
-
Posada D, Crandall KA. 2001. Selecting the best-fit model of nucleotide substitution. Syst. Biol. 50:580-601
-
(2001)
Syst. Biol.
, vol.50
, pp. 580-601
-
-
Posada, D.1
Crandall, K.A.2
-
99
-
-
0031966291
-
Estimating divergence dates from molecular sequences
-
Rambaut A, Bromham L. 1998. Estimating divergence dates from molecular sequences. Mol. Biol. Evol. 15:442-48
-
(1998)
Mol. Biol. Evol.
, vol.15
, pp. 442-448
-
-
Rambaut, A.1
Bromham, L.2
-
100
-
-
0027995091
-
Thermal habit, metabolic rate and the evolution of mitochondrial DNA
-
Rand DM. 1994. Thermal habit, metabolic rate and the evolution of mitochondrial DNA. Trends Ecol. Evol. 9:125-31
-
(1994)
Trends Ecol. Evol.
, vol.9
, pp. 125-131
-
-
Rand, D.M.1
-
101
-
-
0021038163
-
Estimation of the co-ancestry coefficient - Basis for a short term genetic distance
-
Reynolds J, Weir BS, Cockerham CC. 1983. Estimation of the co-ancestry coefficient - Basis for a short term genetic distance. Genetics 105:767-79
-
(1983)
Genetics
, vol.105
, pp. 767-779
-
-
Reynolds, J.1
Weir, B.S.2
Cockerham, C.C.3
-
103
-
-
0035849846
-
Rapid and recent origin of species richness in the Cape flora of South Africa
-
Richardson J, Weitz F, Fay M, Cronk Q, Linder H, et al. 2001. Rapid and recent origin of species richness in the Cape flora of South Africa. Nature 412:181-83
-
(2001)
Nature
, vol.412
, pp. 181-183
-
-
Richardson, J.1
Weitz, F.2
Fay, M.3
Cronk, Q.4
Linder, H.5
-
105
-
-
0001486658
-
The relationship between coalescence times and population divergence times
-
ed. MW Slatkin, M Veuille. Oxford, UK: Oxford Univ. Press
-
Rosenberg NA, Feldman MW. 2002. The relationship between coalescence times and population divergence times. In Modern Developments in Theoretical Population Genetics, ed. MW Slatkin, M Veuille. Oxford, UK: Oxford Univ. Press
-
(2002)
Modern Developments in Theoretical Population Genetics
-
-
Rosenberg, N.A.1
Feldman, M.W.2
-
106
-
-
0030773749
-
A nonparametric approach to estimating divergence times in the absence of rate constancy
-
Sanderson MJ. 1997. A nonparametric approach to estimating divergence times in the absence of rate constancy. Mol. Biol. Evol. 14:1218-31
-
(1997)
Mol. Biol. Evol.
, vol.14
, pp. 1218-1231
-
-
Sanderson, M.J.1
-
107
-
-
0036135468
-
Estimating absolute rates of molecular evolution and divergence times: A penalized likelihood approach
-
Sanderson MJ. 2002. Estimating absolute rates of molecular evolution and divergence times: A penalized likelihood approach. Mol. Biol. Evol. 19:101-9
-
(2002)
Mol. Biol. Evol.
, vol.19
, pp. 101-109
-
-
Sanderson, M.J.1
-
108
-
-
0034351397
-
Parametric phylogenetics?
-
Sanderson MJ, Kim J. 2000. Parametric phylogenetics? Syst. Biol. 49:817-29
-
(2000)
Syst. Biol.
, vol.49
, pp. 817-829
-
-
Sanderson, M.J.1
Kim, J.2
-
109
-
-
0026460082
-
Population genetics of polymorphism and divergence
-
Sawyer SA, Hartl DL. 1992. Population genetics of polymorphism and divergence. Genetics 132:1161-76
-
(1992)
Genetics
, vol.132
, pp. 1161-1176
-
-
Sawyer, S.A.1
Hartl, D.L.2
-
110
-
-
0033805038
-
Recombination and the molecular clock
-
Schierup MH, Hein J. 2000. Recombination and the molecular clock. Mol. Biol. Evol. 17:1578-79
-
(2000)
Mol. Biol. Evol.
, vol.17
, pp. 1578-1579
-
-
Schierup, M.H.1
Hein, J.2
-
112
-
-
0000120766
-
Estimating the dimensions of a model
-
Schwartz G. 1978. Estimating the dimensions of a model. Ann. Stat. 6:461-64
-
(1978)
Ann. Stat.
, vol.6
, pp. 461-464
-
-
Schwartz, G.1
-
113
-
-
0028518745
-
Mismatch distributions of mtDNA reveal recent human population expansions
-
Sherry ST, Rogers AR, Harpending H, Soodyall H, Jenkins T, Stoneking M. 1994. Mismatch distributions of mtDNA reveal recent human population expansions. Hum. Biol. 66:761-75
-
(1994)
Hum. Biol.
, vol.66
, pp. 761-775
-
-
Sherry, S.T.1
Rogers, A.R.2
Harpending, H.3
Soodyall, H.4
Jenkins, T.5
Stoneking, M.6
-
114
-
-
0022169067
-
Gene flow in natural populations
-
Slatkin M. 1985. Gene flow in natural populations. Annu. Rev. Ecol. Syst. 16:393-430
-
(1985)
Annu. Rev. Ecol. Syst.
, vol.16
, pp. 393-430
-
-
Slatkin, M.1
-
115
-
-
0023159436
-
Gene flow and the geographic structure of natural populations
-
Slatkin M. 1987. Gene flow and the geographic structure of natural populations. Science 236:787-92
-
(1987)
Science
, vol.236
, pp. 787-792
-
-
Slatkin, M.1
-
116
-
-
0026050476
-
Inbreeding coefficients and coalescence times
-
Slatkin M. 1991. Inbreeding coefficients and coalescence times. Genet. Res., Camb. 58:167-75
-
(1991)
Genet. Res., Camb.
, vol.58
, pp. 167-175
-
-
Slatkin, M.1
-
117
-
-
0024341852
-
A cladistic measure of gene flow inferred from the phylogenies of alleles
-
Slatkin M, Maddison WP. 1989. A cladistic measure of gene flow inferred from the phylogenies of alleles. Genetics 123:603-13
-
(1989)
Genetics
, vol.123
, pp. 603-613
-
-
Slatkin, M.1
Maddison, W.P.2
-
118
-
-
0025048184
-
Detecting isolation by distance using phylogenies of genes
-
Slatkin M, Maddison WP. 1990. Detecting isolation by distance using phylogenies of genes. Genetics 126:249-60
-
(1990)
Genetics
, vol.126
, pp. 249-260
-
-
Slatkin, M.1
Maddison, W.P.2
-
119
-
-
0033139192
-
Is there an inverse relationship between body size and the rate of molecular evolution
-
Slowinski JB, Arbogast BS. 1999. Is there an inverse relationship between body size and the rate of molecular evolution. Syst. Biol. 48:396-99
-
(1999)
Syst. Biol.
, vol.48
, pp. 396-399
-
-
Slowinski, J.B.1
Arbogast, B.S.2
-
120
-
-
0030310775
-
Confidence intervals for the divergence time of two clades
-
Steel MA, Cooper AC, Penny D. 1996. Confidence intervals for the divergence time of two clades. Syst. Biol. 45:127-34
-
(1996)
Syst. Biol.
, vol.45
, pp. 127-134
-
-
Steel, M.A.1
Cooper, A.C.2
Penny, D.3
-
121
-
-
0034983646
-
Bayesian selection of continuous-time Markov chain evolutionary models
-
Suchard M, Weiss R, Sinsheimer J. 2001. Bayesian selection of continuous-time Markov chain evolutionary models. Mol. Biol. Evol. 18:1001-13
-
(2001)
Mol. Biol. Evol.
, vol.18
, pp. 1001-1013
-
-
Suchard, M.1
Weiss, R.2
Sinsheimer, J.3
-
122
-
-
0029880314
-
The effect of topology on estimates of among-site rate variation
-
Sullivan J, Holsinger K, Simon C. 1996. The effect of topology on estimates of among-site rate variation. J. Mol. Evol. 42:308-12
-
(1996)
J. Mol. Evol.
, vol.42
, pp. 308-312
-
-
Sullivan, J.1
Holsinger, K.2
Simon, C.3
-
123
-
-
0035527373
-
Should we use model-based methods for phylogenetic inference when we know that assumptions about among-site rate variation and nucleotide substitution pattern are violated?
-
Sullivan J, Swofford D. 2001. Should we use model-based methods for phylogenetic inference when we know that assumptions about among-site rate variation and nucleotide substitution pattern are violated? Syst. Biol. 50:723-29
-
(2001)
Syst. Biol.
, vol.50
, pp. 723-729
-
-
Sullivan, J.1
Swofford, D.2
-
125
-
-
0001336205
-
Phylogenetic inference
-
ed. D Hillis, C Mortiz, BK Mable. Sunderland, MA: Sinauer
-
Swofford D, Olsen G, Waddell P, Hillis D. 1996. Phylogenetic inference. In Molecular Systematics, ed. D Hillis, C Mortiz, BK Mable, pp. 407-514. Sunderland, MA: Sinauer
-
(1996)
Molecular Systematics
, pp. 407-514
-
-
Swofford, D.1
Olsen, G.2
Waddell, P.3
Hillis, D.4
-
126
-
-
0021066244
-
Evolutionary relationship of DNA sequences in finite populations
-
Tajima F. 1983. Evolutionary relationship of DNA sequences in finite populations. Genetics 105:437-60
-
(1983)
Genetics
, vol.105
, pp. 437-460
-
-
Tajima, F.1
-
127
-
-
0024313579
-
Statistical method for testing the neutral mutation hypothesis by DNA polymorphism
-
Tajima F. 1989. Statistical method for testing the neutral mutation hypothesis by DNA polymorphism. Genetics 123:585-95
-
(1989)
Genetics
, vol.123
, pp. 585-595
-
-
Tajima, F.1
-
128
-
-
0022919117
-
An attempt to estimate the effective size of the ancestral species common to two extant species from which homologous genes are sequenced
-
Takahata N. 1986. An attempt to estimate the effective size of the ancestral species common to two extant species from which homologous genes are sequenced. Genet. Res. Camb. 48:187-90
-
(1986)
Genet. Res. Camb.
, vol.48
, pp. 187-190
-
-
Takahata, N.1
-
129
-
-
0023337434
-
On the overdispersed molecular clock
-
Takahata N. 1987. On the overdispersed molecular clock. Genetics 116:169-79
-
(1987)
Genetics
, vol.116
, pp. 169-179
-
-
Takahata, N.1
-
130
-
-
0024713112
-
Gene genealogy in three related populations: Consistency probability between gene and population trees
-
Takahata N. 1989. Gene genealogy in three related populations: Consistency probability between gene and population trees. Genetics 122:957-66
-
(1989)
Genetics
, vol.122
, pp. 957-966
-
-
Takahata, N.1
-
131
-
-
0025366147
-
A simple genealogical structure of strongly balanced allelic lines and trans-species polymorphism
-
Takahata N. 1990. A simple genealogical structure of strongly balanced allelic lines and trans-species polymorphism. Proc. Natl. Acad. Sci. USA 87:2419-23
-
(1990)
Proc. Natl. Acad. Sci. USA
, vol.87
, pp. 2419-2423
-
-
Takahata, N.1
-
132
-
-
0022390691
-
Gene genealogy and variance of interpopulational nucleotide differences
-
Takahata N, Nei M. 1985. Gene genealogy and variance of interpopulational nucleotide differences. Genetics 110:325-44
-
(1985)
Genetics
, vol.110
, pp. 325-344
-
-
Takahata, N.1
Nei, M.2
-
133
-
-
0025255468
-
Allelic genealogy under overdominant and frequency-dependent selection and polymorphism of major histocompatibility complex loci
-
Takahata N, Nei M. 1990. Allelic genealogy under overdominant and frequency-dependent selection and polymorphism of major histocompatibility complex loci. Genetics 124:967-78
-
(1990)
Genetics
, vol.124
, pp. 967-978
-
-
Takahata, N.1
Nei, M.2
-
134
-
-
0030895289
-
Evolution of the primate lineage leading to modern humans: Phylogenetic and demographic inferences from DNA sequences
-
Takahata N, Satta Y. 1997. Evolution of the primate lineage leading to modern humans: Phylogenetic and demographic inferences from DNA sequences. Proc. Natl. Acad. Sci. USA 94:4811-15
-
(1997)
Proc. Natl. Acad. Sci. USA
, vol.94
, pp. 4811-4815
-
-
Takahata, N.1
Satta, Y.2
-
135
-
-
0029415835
-
Divergence time and population size in the lineage leading to modern humans
-
Takahata N, Satta Y, Klein J. 1995. Divergence time and population size in the lineage leading to modern humans. Theor. Pop. Biol. 48:198-221
-
(1995)
Theor. Pop. Biol.
, vol.48
, pp. 198-221
-
-
Takahata, N.1
Satta, Y.2
Klein, J.3
-
136
-
-
0029100727
-
Phylogenetic test of the molecular clock and linearized trees
-
Takezaki N, Rzhetsky A, Nei M. 1995. Phylogenetic test of the molecular clock and linearized trees. Mol. Biol. Evol. 12:823-33
-
(1995)
Mol. Biol. Evol.
, vol.12
, pp. 823-833
-
-
Takezaki, N.1
Rzhetsky, A.2
Nei, M.3
-
137
-
-
0021514720
-
Lines-of-descent and genealogical processes, and their application in population genetic models
-
Tavaré S. 1984. Lines-of-descent and genealogical processes, and their application in population genetic models. Theoret. Pop. Biol. 26:119-64
-
(1984)
Theoret. Pop. Biol.
, vol.26
, pp. 119-164
-
-
Tavaré, S.1
-
138
-
-
0032055149
-
Nested clade analysis of phylogeographic data: Testing hypotheses about gene flow and population history
-
Templeton AR. 1998. Nested clade analysis of phylogeographic data: Testing hypotheses about gene flow and population history. Mol. Ecol. 7:381-97
-
(1998)
Mol. Ecol.
, vol.7
, pp. 381-397
-
-
Templeton, A.R.1
-
139
-
-
0029058158
-
Separating population structure from population history: A cladistic analysis of the geographical distribution of mitochondrial DNA haplotypes in the tiger salamander
-
Templeton AR, Routman E, Phillips C. 1995. Separating population structure from population history: A cladistic analysis of the geographical distribution of mitochondrial DNA haplotypes in the tiger salamander. Ambystoma Tigrinum. Genetics 140:767-82
-
(1995)
Ambystoma Tigrinum. Genetics
, vol.140
, pp. 767-782
-
-
Templeton, A.R.1
Routman, E.2
Phillips, C.3
-
140
-
-
0035865322
-
A map of human genome sequence variation containing 1.42 million single nucleotide polymorphisms
-
The International SNP Map Working Group. 2001. A map of human genome sequence variation containing 1.42 million single nucleotide polymorphisms. Nature 409:928-33
-
(2001)
Nature
, vol.409
, pp. 928-933
-
-
-
141
-
-
0031741182
-
Estimating the rate of evolution of the rate of molecular evolution
-
Thorne J, Kishino H, Painter I. 1998. Estimating the rate of evolution of the rate of molecular evolution. Mol. Biol. Evol. 15:1647-57
-
(1998)
Mol. Biol. Evol.
, vol.15
, pp. 1647-1657
-
-
Thorne, J.1
Kishino, H.2
Painter, I.3
-
142
-
-
0034625065
-
The phylogeny of closely related species as revealed by the genealogy of a speciation gene
-
Ting C-T, Tsaur S-C, Wu C-I. 2000. The phylogeny of closely related species as revealed by the genealogy of a speciation gene. Odysseus. Proc. Natl. Acad. Sci. USA 97:5313-16
-
(2000)
Odysseus. Proc. Natl. Acad. Sci. USA
, vol.97
, pp. 5313-5316
-
-
Ting, C.-T.1
Tsaur, S.-C.2
Wu, C.-I.3
-
143
-
-
0031927473
-
Positive selection driving the evolution of a gene of male reproduction, ACP26Aa of Drosophila: II. Divergence vs. polymorphism
-
Tsaur S, Ting CT, Wu C-I. 1998. Positive selection driving the evolution of a gene of male reproduction, ACP26Aa of Drosophila: II. Divergence vs. polymorphism. Mol. Biol. Evol. 15:1040-46
-
(1998)
Mol. Biol. Evol.
, vol.15
, pp. 1040-1046
-
-
Tsaur, S.1
Ting, C.T.2
Wu, C.-I.3
-
144
-
-
0033762701
-
Y chromosome sequence variation and the history of human populations
-
Underhill P, Shen P, Lin A, Jin L, Passarino G, et al. 2000. Y chromosome sequence variation and the history of human populations. Nat. Genet. 26:358-61
-
(2000)
Nat. Genet.
, vol.26
, pp. 358-361
-
-
Underhill, P.1
Shen, P.2
Lin, A.3
Jin, L.4
Passarino, G.5
-
145
-
-
0015219691
-
Fitting discrete probability distributions to evolutionary events
-
Uzzell T, Corbin KW. 1971. Fitting discrete probability distributions to evolutionary events. Science 172:1089-96
-
(1971)
Science
, vol.172
, pp. 1089-1096
-
-
Uzzell, T.1
Corbin, K.W.2
-
146
-
-
0022980133
-
Nuclear and mitochondrial DNA comparisons reveal extreme rate variation in the molecular clock
-
Vawter L, Brown WM. 1986. Nuclear and mitochondrial DNA comparisons reveal extreme rate variation in the molecular clock. Science 234:194-96
-
(1986)
Science
, vol.234
, pp. 194-196
-
-
Vawter, L.1
Brown, W.M.2
-
147
-
-
0032695683
-
Dispersal, vicariance, and clocks: Historical biogeography and speciation in a cosmopolitan passerine genus (Anthus: motacillidae)
-
Voelker G. 1999. Dispersal, vicariance, and clocks: Historical biogeography and speciation in a cosmopolitan passerine genus (Anthus: motacillidae). Evolution 53:1536-52
-
(1999)
Evolution
, vol.53
, pp. 1536-1552
-
-
Voelker, G.1
-
148
-
-
0030174857
-
Distinguishing migration from isolation using the variance of pairwise differences
-
Wakeley J. 1996a. Distinguishing migration from isolation using the variance of pairwise differences. Theoret. Pop. Biol. 49:369-86
-
(1996)
Theoret. Pop. Biol.
, vol.49
, pp. 369-386
-
-
Wakeley, J.1
-
149
-
-
21444445665
-
Pairwise differences under a general model of population subdivision
-
Wakeley J. 1996b. Pairwise differences under a general model of population subdivision. J. Genet. 75:81-89
-
(1996)
J. Genet.
, vol.75
, pp. 81-89
-
-
Wakeley, J.1
-
150
-
-
0030087512
-
The variance of pairwise nucleotide differences in two populations with migration
-
Wakeley J. 1996c. The variance of pairwise nucleotide differences in two populations with migration. Theoret. Pop. Biol. 49:39-57
-
(1996)
Theoret. Pop. Biol.
, vol.49
, pp. 39-57
-
-
Wakeley, J.1
-
151
-
-
0032047371
-
Segregating sites in Wright's island model
-
Wakeley J. 1998. Segregating sites in Wright's island model. Theoret. Pop. Biol. 53:166-75
-
(1998)
Theoret. Pop. Biol.
, vol.53
, pp. 166-175
-
-
Wakeley, J.1
-
152
-
-
0033823303
-
The effects of population subdivision on the genetic divergence of populations and species
-
Wakeley J. 2000. The effects of population subdivision on the genetic divergence of populations and species. Evolution 54:1092-101
-
(2000)
Evolution
, vol.54
, pp. 1092-1101
-
-
Wakeley, J.1
-
153
-
-
0035714381
-
The coalescent in an island model of population subdivision with variation among demes
-
Wakeley J. 2001a. The coalescent in an island model of population subdivision with variation among demes. Theoret. Pop. Biol. 59:133-44
-
(2001)
Theoret. Pop. Biol.
, vol.59
, pp. 133-144
-
-
Wakeley, J.1
-
154
-
-
0033823303
-
The effects of subdivision on the genetic divergence of populations and species
-
Wakeley J. 2001b. The effects of subdivision on the genetic divergence of populations and species. Evolution 54:1092-101
-
(2001)
Evolution
, vol.54
, pp. 1092-1101
-
-
Wakeley, J.1
-
155
-
-
0031018637
-
Estimating ancestral population parameters
-
Wakeley J, Hey J. 1997. Estimating ancestral population parameters. Genetics 145:847-55
-
(1997)
Genetics
, vol.145
, pp. 847-855
-
-
Wakeley, J.1
Hey, J.2
-
156
-
-
0001915726
-
Testing speciation models with DNA sequence data
-
ed. B Schierwater, R DeSalle. Basel: Birkhauser-Verlag
-
Wakeley J, Hey J. 1998. Testing speciation models with DNA sequence data. In Molecular Approaches to Ecology and Evolution, ed. B Schierwater, R DeSalle, pp. 157-75. Basel: Birkhauser-Verlag
-
(1998)
Molecular Approaches to Ecology and Evolution
, pp. 157-175
-
-
Wakeley, J.1
Hey, J.2
-
157
-
-
0033593549
-
Divergence time estimates for the early history of animal phyla and the origin of plants, animals and fungi
-
Wang D, Kumar S, Hedges S. 1999. Divergence time estimates for the early history of animal phyla and the origin of plants, animals and fungi. Proc. R. Soc. London. Ser. B 266:163-71
-
(1999)
Proc. R. Soc. London. Ser. B
, vol.266
, pp. 163-171
-
-
Wang, D.1
Kumar, S.2
Hedges, S.3
-
158
-
-
0003243515
-
Gene flow and natural selection in the origin of Drosophila pseudoobscura and close relatives
-
Wang R-L, Wakeley J, Hey J. 1997. Gene flow and natural selection in the origin of Drosophila pseudoobscura and close relatives. Genetics 147:1091-106
-
(1997)
Genetics
, vol.147
, pp. 1091-1106
-
-
Wang, R.-L.1
Wakeley, J.2
Hey, J.3
-
159
-
-
0012126844
-
Estimating species divergence times using multilocus data
-
ed. T Ohta, K Aoki. Tokyo: Jpn. Sci. Soc.
-
Watterson GA. 1985a. Estimating species divergence times using multilocus data. In Population Genetics and Molecular Evolution, ed. T Ohta, K Aoki, pp. 163-83. Tokyo: Jpn. Sci. Soc.
-
(1985)
Population Genetics and Molecular Evolution
, pp. 163-183
-
-
Watterson, G.A.1
-
160
-
-
0000641591
-
The genetic divergence of two populations
-
Watterson GA. 1985b. The genetic divergence of two populations. Theoret. Pop. Biol. 27:298-317
-
(1985)
Theoret. Pop. Biol.
, vol.27
, pp. 298-317
-
-
Watterson, G.A.1
-
161
-
-
0035989441
-
The coalescent in a continuous, finite, linear population
-
Wilkins JF, Wakeley J. 2002. The coalescent in a continuous, finite, linear population. Genetics 161:873-88
-
(2002)
Genetics
, vol.161
, pp. 873-888
-
-
Wilkins, J.F.1
Wakeley, J.2
-
162
-
-
0000635613
-
Mitochondrial DNA and two perspectives on evolutionary genetics
-
Wilson AC, Cann RL, Carr SM, George M, Gyllensten UB, et al. 1985. Mitochondrial DNA and two perspectives on evolutionary genetics. Biol. J. Linnaean Soc. 26:375-400
-
(1985)
Biol. J. Linnaean Soc.
, vol.26
, pp. 375-400
-
-
Wilson, A.C.1
Cann, R.L.2
Carr, S.M.3
George, M.4
Gyllensten, U.B.5
-
164
-
-
0030726751
-
On the number of ancestors to a DNA sequence
-
Wiuf C, Hein J. 1997. On the number of ancestors to a DNA sequence. Genetics 147:1459-68
-
(1997)
Genetics
, vol.147
, pp. 1459-1468
-
-
Wiuf, C.1
Hein, J.2
-
165
-
-
0001771498
-
Evolution in Mendelian populations
-
Wright S. 1931. Evolution in Mendelian populations. Genetics 16:97-159
-
(1931)
Genetics
, vol.16
, pp. 97-159
-
-
Wright, S.1
-
166
-
-
0001024012
-
Isolation by distance
-
Wright S. 1943. Isolation by distance. Genetics 28:114-38
-
(1943)
Genetics
, vol.28
, pp. 114-138
-
-
Wright, S.1
-
167
-
-
84890417804
-
The genetical structure of populations
-
Wright S. 1951. The genetical structure of populations. Ann. Eugenics 15:323-54
-
(1951)
Ann. Eugenics
, vol.15
, pp. 323-354
-
-
Wright, S.1
-
168
-
-
0034688140
-
Rapid evolution of male reproductive genes in the descent of man
-
Wyckoff GJ, Wang W, Wu C-I. 2000. Rapid evolution of male reproductive genes in the descent of man. Nature 403:304-9
-
(2000)
Nature
, vol.403
, pp. 304-309
-
-
Wyckoff, G.J.1
Wang, W.2
Wu, C.-I.3
-
169
-
-
0027132974
-
Maximum likelihood estimation of phylogeny from DNA sequences when substitution rates differ over sites
-
Yang Z. 1993. Maximum likelihood estimation of phylogeny from DNA sequences when substitution rates differ over sites. Mol. Biol. Evol. 10:1396-401
-
(1993)
Mol. Biol. Evol.
, vol.10
, pp. 1396-1401
-
-
Yang, Z.1
-
170
-
-
0028064845
-
Maximum likelihood phylogenetic estimation from DNA sequences with variable rates over sites: Approximate methods
-
Yang Z. 1994. Maximum likelihood phylogenetic estimation from DNA sequences with variable rates over sites: Approximate methods. J. Mol. Evol. 39:306-14
-
(1994)
J. Mol. Evol.
, vol.39
, pp. 306-314
-
-
Yang, Z.1
-
171
-
-
0030741747
-
On the estimation of ancestral population sizes of modern humans
-
Yang Z. 1997. On the estimation of ancestral population sizes of modern humans. Genet. Res. 69:111-16
-
(1997)
Genet. Res.
, vol.69
, pp. 111-116
-
-
Yang, Z.1
-
172
-
-
0028267146
-
Comparison of models for nucleotide substitution used in maximum-likelihood phylogenetic estimation
-
Yang Z, Goldman N, Friday A. 1994. Comparison of models for nucleotide substitution used in maximum-likelihood phylogenetic estimation. Mol. Biol. Evol. 11:316-24
-
(1994)
Mol. Biol. Evol.
, vol.11
, pp. 316-324
-
-
Yang, Z.1
Goldman, N.2
Friday, A.3
-
173
-
-
0033933640
-
Estimation of primate speciation dates using local molecular clocks
-
Yoder A, Yang Z. 2000. Estimation of primate speciation dates using local molecular clocks. Mol. Biol. Evol. 17:1081-90
-
(2000)
Mol. Biol. Evol.
, vol.17
, pp. 1081-1090
-
-
Yoder, A.1
Yang, Z.2
-
174
-
-
0035042266
-
Estimating divergence time with the use of microsatellite genetic distances: Impacts of population growth and gene flow
-
Zhivotovsky LA. 2001. Estimating divergence time with the use of microsatellite genetic distances: Impacts of population growth and gene flow. Mol. Biol. Evol. 18:700-9
-
(2001)
Mol. Biol. Evol.
, vol.18
, pp. 700-709
-
-
Zhivotovsky, L.A.1
-
175
-
-
0002313863
-
Phylogeographic studies of North American birds
-
ed. DP Mindell. San Diego, CA: Academic
-
Zink RM. 1997. Phylogeographic studies of North American birds. In Avian Molecular Evolution and Systematics, ed. DP Mindell, pp. 301-24. San Diego, CA: Academic
-
(1997)
Avian Molecular Evolution and Systematics
, pp. 301-324
-
-
Zink, R.M.1
-
176
-
-
0001895697
-
Evolutionary divergence and convergence in proteins
-
ed. V Bryson, HJ Vogel. New York: Academic
-
Zuckerkandl E, Pauling L. 1965. Evolutionary divergence and convergence in proteins. In Evolving Genes and Proteins, ed. V Bryson, HJ Vogel. New York: Academic
-
(1965)
Evolving Genes and Proteins
-
-
Zuckerkandl, E.1
Pauling, L.2
|