Identification of direct serum-response factor gene targets during Me 2SO-induced P19 cardiac cell differentiation

Journal of Biological Chemistry

Volumn 280, Issue 19, 2005, Pages 19115-19126

  Zhang, Shu Xing ^a   Garcia Gras, Eduardo ^a   Wycuff, Diane R ^a   Marriot, Suzanne J ^a   Kadeer, Nijiati ^a   Yu, Wei ^a   Olson, Eric N ^b   Garry, Daniel J ^c   Parmacek, Michael S ^d   Schwartz, Robert J ^a,e  

^a BAYLOR COLLEGE OF MEDICINE   (United States)

^b UNIVERSITY OF TEXAS SOUTHWESTERN MEDICAL CENTER   (United States)

^c UNIVERSITY OF TEXAS SOUTHWESTERN MEDICAL CENTER   (United States)

^d UNIVERSITY OF PENNSYLVANIA   (United States)

^e TEXAS A AND M HEALTH SCIENCE CENTER   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

ACTIVATION ENERGY; CARDIOVASCULAR SYSTEM; CELLS; DNA; GENETIC ENGINEERING; METABOLITES; ORGANIC ACIDS;

EXPRESSION PATTERNS; SERUM-RESPONSE FACTOR (SRF); SRF-BOUND GENES; VIREBRATE MESODERM;

GENES;

BETA GALACTOSIDASE; DIMETHYL SULFOXIDE; DNA FRAGMENT; GENOMIC DNA; SERUM RESPONSE FACTOR; TRANSCRIPTION FACTOR; DNA; HEAT SHOCK PROTEIN 70; HSPA1A PROTEIN, RAT; LUCIFERASE; RNA;

ACTC1 GENE; ANIMAL CELL; ANIMAL TISSUE; ARTICLE; ASB5 GENE; AZI2 GENE; BICC1 GENE; CARDIOVASCULAR SYSTEM; CELL DIFFERENTIATION; CENPB GENE; CHROMATIN; CONTROLLED STUDY; E2F5 GENE; EMBRYONIC STEM CELL; GENE; GENE CONTROL; GENE EXPRESSION; GENETIC TRANSFECTION; HEART MUSCLE CELL; HIF3A GENE; HSPG2 GENE; IMMUNOPRECIPITATION; LRP4 GENE; MAP4K4 GENE; MAPK10 GENE; MESODERM; MITOSIS; MOUSE; MYL3 GENE; NONHUMAN; NPM1 GENE; NUCLEOTIDE SEQUENCE; ORGANOGENESIS; PGM2 GENE; PLURIPOTENT STEM CELL; PRIORITY JOURNAL; RAF1 GENE; RBBP6 GENE; REPORTER GENE; SCYL1 GENE; SEMA3A GENE; TERA GENE; TXNL2 GENE; UNINDEXED SEQUENCE; ANIMAL; BINDING SITE; BIOLOGICAL MODEL; CELL LINE; CHEMISTRY; CHROMATIN IMMUNOPRECIPITATION; DATA BASE; DNA MICROARRAY; DOWN REGULATION; GENE EXPRESSION REGULATION; GENE VECTOR; GENETIC TRANSCRIPTION; GENOME; HEART MUSCLE; HETEROZYGOTE; IN SITU HYBRIDIZATION; LACTOSE OPERON; METABOLISM; MOLECULAR CLONING; MUSCLE; MUTATION; POLYACRYLAMIDE GEL ELECTROPHORESIS; PROTEIN BINDING; PROTEIN MOTIF; REVERSE TRANSCRIPTION POLYMERASE CHAIN REACTION; UPREGULATION; WESTERN BLOTTING;

TOBACCO ETCH VIRUS; VERTEBRATA;

AMINO ACID MOTIFS; ANIMALS; BETA-GALACTOSIDASE; BINDING SITES; BLOTTING, WESTERN; CELL DIFFERENTIATION; CELL LINE; CHROMATIN; CHROMATIN IMMUNOPRECIPITATION; CLONING, MOLECULAR; DATABASES; DIMETHYL SULFOXIDE; DNA; DOWN-REGULATION; ELECTROPHORESIS, POLYACRYLAMIDE GEL; GENE EXPRESSION REGULATION; GENES, REPORTER; GENETIC VECTORS; GENOME; HETEROZYGOTE; HSP70 HEAT-SHOCK PROTEINS; IN SITU HYBRIDIZATION; LAC OPERON; LUCIFERASES; MESODERM; MICE; MODELS, BIOLOGICAL; MUSCLES; MUTATION; MYOCARDIUM; OLIGONUCLEOTIDE ARRAY SEQUENCE ANALYSIS; PROTEIN BINDING; REVERSE TRANSCRIPTASE POLYMERASE CHAIN REACTION; RNA; SERUM RESPONSE FACTOR; TRANSCRIPTION, GENETIC; TRANSFECTION; UP-REGULATION;

EID: 21444451873     PISSN: 00219258     EISSN: None     Source Type: Journal    
DOI: 10.1074/jbc.M413793200     Document Type: Article

References (76)

1. Minty, A., and Kedes, L. (1986) Mol. Cell. Biol. 6, 2125-2136
2. Miwa, T., and Kedes, L. (1987) Mol. Cell. Biol. 7, 2803-2813
3. Treisman R. (1994) Curr. Opin. Genet. Dev. 4, 96-101
4. Bergsma, D. J., Grichnik, J. M., Gossett, L. M., and Schwartz, R. J. (1986) Mol. Cell. Biol. 6, 2462-2475
5. Carroll, S. L., Bergsma, D. J., and Schwartz, R. J. (1986) J. Biol. Chem. 261, 8965-8976
6. Carroll, S. L., Bergsma, D. J., and Schwartz, R. J. (1988) Mol. Cell. Biol. 8, 241-250
7. Schwarz-Sommer, Z., Huijser, P., Nacken, W., Saedler, H., and Sommer, H. (1990) Science 250, 931-936
8. Hayes, T. E., Sengupta, P., and Cochran, B. H. (1988) Genes Dev. 2, 1713-1722
9. Martin, J. F., Schwarz, J. J., and Olson, E. N. (1993) Proc. Natl. Acad. Sci. U. S. A. 90, 5282-5286
10. Pollock, R., and Treisman, R. (1991) Genes Dev. 5, 2327-2341
11. Lilly, B., Zhao, B., Ranganayakulu, G., Paterson, B. M., Schulz, R. A., and Olson, E. N. (1995) Science 267, 688-693
12. Treisman, R., and Ammerer, G. (1992) Curr. Opin. Genet. Dev. 2, 221-226
13. Ma, H., Yanofsky, M. F., and Meyerowitz, E. M. (1991) Genes Dev. 5, 484-495
14. Guillemin, K., Groppe, J., Ducker, K., Treisman, R., Hafen, E., Affolter, M., and Krasnow, M. A. (1996) Development (Camb.) 122, 1353-1362
15. Arenian, S., Weinhold, B., Oelgeschlager, M., Ruther, U., and Nordheim, A. (1998) EMBO J. 17, 6289-6299
16. Miano, J. M. (2003) J. Mol. Cell. Cardiol. 35, 577-593
17. Reecy, J. M., Belaguli, N. S., and Schwartz, R. J. (1999) in Heart Development (Harvey, R. P., and Rosenthal, N., eds) pp. 273-290, Academic Press, San Diego
18. Herschman, H. R. (1991) Annu. Rev. Biochem. 60, 281-319
19. Dalgleish, P., and Sharrocks, A. D. (2000) Nucleic Acids Res. 28, 560-569
20. Chen, C. Y., and Schwartz, R. J. (1996) Mol. Cell. Biol. 16, 6372-6384
21. Chen, C. Y., and Schwartz, R. J. (1997) Mol. Endocrinol. 11, 812-822
22. Sepulveda, J. L., Vlahopoulos, S., Iyer, D., Belaguli, N., and Schwartz, R. J. (2002) J. Biol. Chem. 277, 25775-25782
23. Chang, D. F., Belaguli, N. S., Iyer, D., Roberts, W. B., Wu, S. P., Dong, X. R., Marx, J. G., Moore, M. S., Beckerle, M. C., Majesky, M. W., and Schwartz, R. J. (2003) Dev. Cell 4, 107-108
24. Wang, D., Chang, P. S., Wang, Z., Sutherland, L., Richardson, J. A., Small, E., and Olson, E. N. (2001) Cell 105, 851-862
25. Miralles, F., Posern, G., Zaromytidou, A. I., and Treisman, R. (2003) Cell 113, 329-342
26. Selvaraj, A., and Prywes, R. (2003) J. Biol. Chem. 278, 41977-41987
27. Ren, B., Robert, F., Wyrick, J. J., Aparicio, O., Jennings, E. G., Simon, I., Zeitlinger, J., Schreiber, J., Hannett, N., Kanin, E., Volkert, T. L., Wilson, C. J., Bell, S. P., and Young, R. A. (2000) Science 290, 2306-2309
28. Wang, H., Tang, W., Zhu, C., and Perry, S. E. A. (2002) Plant J. 32, 831-843
29. Solano, P. J., Mugat, B., Martin, D., Glard, F., Mubant, J. M., Ferraz, C., Jacq, B., Demaille, J., and Maschat, F. (2003) Development (Camb.) 130, 1243-1254
30. Ren, B., Can, H., Takahashi, Y., Nolkert, T., Terragni, J., Young, R. A., and Dynlach, B. D. (2001) Genes Dev. 16, 245-256
31. Weinmann, A. S., Yan, P. S., Oberley, M. J., Huang, T. H., and Farnham, P. J. (2002) Genes Dev. 15, 235-244
32. Lau, E., Kunzler, M., Braunwarth, A., Hellmuth, K., Podtelejnkov, A., Mann, M., and Hurt, E. (2000) J. Biol. Chem. 274, 467-471
33. Skerjanc, I. S. (1999) Trends Cardiovasc. Med. 9, 139-143
34. Gallardo, T. D., Hammer, R. E., and Garry, D. J. (2003) Genesis 37, 57-63
35. Chen, C. Y., Gherzi, R., Ong, S.-E., Chan, E. L., Raijmakers, R., Prujin, G. J. M., Stoeckline, G., Moroni, C., Mann, M., and Karin, M. (2001) Cell 107, 451-464
36. Gavin, A. C., Bosche, M., Krause, R., Grandi, P., Marzioch, M., Bauer, A., Schultz, J., Rick, J. M., and Michon, A. M. (2002) Nature 145, 141-147
37. Blackwood, E. M., and Kadomaga, J. T. (1998) Science 281, 60-63
38. Lee, T. C., Shi, Y., and Schwartz, R. J. (1992) Proc. Natl. Acad. Sci. U. S. A. 89, 9814-9818
39. Croissant, J. D., Kim, J. H., Eichele, G., Goering, L., Lough, J., Prywes, R., and Schwartz, R. J. (1996) Dev. Biol. 177, 250-264
40. Du, K. L., Ip, H. S., Li, J., Chen, M., Dandre, F., Yu, W., Lu, M. M., Owens, G. K., and Parmacek, M. S. (2003) Mol. Cell. Biol. 23, 2425-2437
41. Wojnowski, L., Stancato, L. F., Larner, A. C., Papp, U. R., and Zimmer, A. (2000) Mech. Dev. 91, 97-104
42. Su, Y.-C. I., Han, J., Xu, S., Cobb, M., and Skolnik, E. Y. (1997) EMBO J. 16, 1279-1290
43. Treisman, R. (1986) Cell 46, 567-574
44. Wessely, O., and De Roberts, E. M. (2000) Development (Camb.) 127, 2053-2062
45. Weesely, O., Tran, U., Zakin, L., and Roberts, E. M. (2001) Mech. Dev. 101, 267-270
46. Pandur, P., Lasche, M., Eisenberg, L. M., and Kuhl, M. (2002) Nature 418, 636-641
47. Solloway, M. J., and Harvey, R. P. (2003) Cardiovasc. Res. 58, 264-277
48. Chai, J., and Tarnawski, A. S. (2002) J. Physiol. Pharmacol. 53, 147-157
49. Johansen, E.-F., and Prywes, R. (1995) Biochim. Biophys. Acta 121, 1-10
50. Cahill, M. A., Janknecht, R., and Nordheim, A. (1995) Induc. Gene Express. 2, 39-72
51. Minchiotti, G., Parisi, S., Liguori, G. L., Andrea, D. D., and Persico, M. G. (2002) Gene (Amst.) 287, 33-37
52. Xue, Y., Wang, X., Li, Z., Gotoh, N., Chapman, D., and Skolnik, E. Y. (2001) Development (Camb.) 128, 1559-1572
53. Gray, T. A., Azama, K., Whitmore, K., Min, A., Abe, S., and Nicholls, R. D. (2001) Genomics 77, 119-126
54. Nakamura, T., Sano, M., Songyang, Z., and Schneider, M. D. (2003) Proc. Natl. Acad. Sci. U. S. A. 100, 5834-5839
55. Witte, S., Villaba, M., Bi, K., Liu, Y., Isakov, N., and Altman, A. (2000) J. Biol. Chem. 275, 1902-1909
56. Aubert, J., Dunstan, H., Chambers, I., and Smith, A. (2002) Nat. Biotechnol. 20, 1240-1245
57. Behar, O., Golden, J. A., Mashimo, H., Schoen, F. J., and Fishman, M. C. (1996) Nature 383, 525-528
58. Costell, M., Gustafsson, E., Aszodi, A., Morgelin, M., Bloch, W., Hunziker, E., Addicks, K., Timple, R., and Fassler, R. (1999) J. Cell Biol. 147, 1109-1122
59. Hara, S., Hamada, J., Kobayashi, C., Kondo, Y., and Imura, N. (2000) Biochem. Biophys. Res. Commun. 287, 808-813
60. Iyer, N. V., Kotch, L. E., Agani, F., Leung, S. W., Lanughner, E., Wenger, R. H., Gassmann, M., Gearhart, J. D., Lawler, A. M., Yu, A. Y., and Semenza, G. L. (1998) Genes Dev. 12, 149-162
61. Ryan, H. E., Lo, J., and Johnson, R. S. (1998) EMBO J. 17, 3005-3015
62. Adelman, D. M., Gertsenstein, M., Nagy, A., Simon, M. C., and Malepe, E. (2000) Genes Dev. 14, 3191-3203
63. Boengler, K., Pipp, F., Fernandez, B., Tichter, A., Schaper, W., and Deind, L. E. (2003) Biochem. Biophys. Res. Commun. 302, 17-22
64. Berk, M., Desai, S. Y., Heyman, H. C., and Colmenares, C. (1997) Genes Dev. 11, 2029-2039
65. Cossins, J., Vermon, A. E., Zhang, Y., Philpott, A., and Jones, P. H. (2002) Development (Camb.) 129, 2195-2207
66. Shannon, M. F., and Rao, S. (2002) Science 296, 666-669
67. Lee, T. I., Rinaldi, N. J., Robert, F., Odom, D. T., Bar-Joseph, Z., Gerber, G. K., Hannett, N. M., Harbison, C. T., Thompson, C. M., Simon, I., Zeitlinger, J., Jennings, E. G., Heather, J., Murray, L., Gordon, D. B., Ren, B., Wyrick, J. J., Tagne, J.-B., Volkert, T. L., Fraenkel, E., Gifford, D. K., and Young, R. A. (2002) Science 298, 799-804
68. Belaguli, N. S., Zhou, W., Trinh, T. H., Majesky, M. W., and Schwartz, R. J. (1999) Mol. Cell. Biol. 19, 4582-4591
69. Chang, J., Wei, L., Otani, T., Youker, K. A., Entman, M. L., and Schwartz, R. J. (2003) Circulation 108, 407-413
70. Chen, J., Kitchen, C. M., Streb, J. W., and Miano, J. M. (2002) J. Mol. Cell. Cardiol. 34, 1345-1356
71. Shin, C. H., Liu, Z. P., Passier, R., Zhang, C. L., Wang, D. Z., Harris, T. M., Yamagishi, H., Richardson, J. A., Childs, G., and Olson, E. N. (2002) Cell 110, 725-735
72. Chen, F., Kook, H., Milewski, R., Gitler, A. D., Lu, M. M., Li, J., Nazarian, R., Schnepp, R., Jen, K., Biben, C., Runke, G., Mackay, J. P., Novotny, J., Schwartz, R. J., Harvey, R. P., Mullins, M. C., and Epstein, J. A. (2002) Cell 110, 713-723
73. Davis, F. J., Gupta, M., Camoretti-Mercado, B., Schwartz, R. J., and Gupta, M. P. (2003) J. Biol. Chem. 278, 20047-20058
74. Lee, T. C., Chow, K. L., Fang, P., and Schwartz, R. J. (1991) Mol. Cell. Biol. 11, 5090-5100
75. Chow, K. L., Hogan, M. E., and Schwartz, R. J. (1991) Proc. Natl. Acad. Sci. U. S. A. 88, 1301-1305
76. Selvaraj, A., and Prywes, R. (2004) BMC Mol. Biol. 5, 13