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Volumn 236, Issue 1, 1999, Pages 149-157

Genetic characterization and evolutionary implications of a chromosomally encoded naphthalene-degradation upper pathway from Pseudomonas stutzeri AN10

Author keywords

Accelerated evolution; Catabolic pathway evolution; Recombination

Indexed keywords

ARTICLE; CODON USAGE; ENZYME ACTIVITY; EVOLUTION; GENE EXPRESSION; GENETIC ANALYSIS; NUCLEOTIDE SEQUENCE; OPEN READING FRAME; PRIORITY JOURNAL; PSEUDOMONAS STUTZERI;

EID: 0345161811     PISSN: 03781119     EISSN: None     Source Type: Journal    
DOI: 10.1016/S0378-1119(99)00241-3     Document Type: Article
Times cited : (127)

References (32)
  • 1
    • 0031781286 scopus 로고    scopus 로고
    • Implications of the xylQ gene of TOL plasmid pWW102 for the evolution of aromatic catabolic pathways
    • Aemprapa S., Williams P.A. Implications of the xylQ gene of TOL plasmid pWW102 for the evolution of aromatic catabolic pathways. Microbiology. 144:1998;1387-1396.
    • (1998) Microbiology , vol.144 , pp. 1387-1396
    • Aemprapa, S.1    Williams, P.A.2
  • 3
    • 0025760438 scopus 로고
    • Nucleotide sequence of xylE from the TOL pDK1 plasmid and structural comparison with isofunctional catechol-2,3-dioxygenase genes from TOL pWW0 and NAH7
    • Benjamin R.C., Voss J.A., Kunz D.A. Nucleotide sequence of xylE from the TOL pDK1 plasmid and structural comparison with isofunctional catechol-2,3-dioxygenase genes from TOL pWW0 and NAH7. J. Bacteriol. 173:1991;2724-2728.
    • (1991) J. Bacteriol. , vol.173 , pp. 2724-2728
    • Benjamin, R.C.1    Voss, J.A.2    Kunz, D.A.3
  • 4
    • 0028987137 scopus 로고
    • A manganese-dependent dioxygenase from Arthrobacter globiformis CM-2 belongs to the major extradiol dioxygenase family
    • Boldt Y.R., Sadowsky M.J., Ellis L.B.M., Que L.J., Wackett L.P. A manganese-dependent dioxygenase from Arthrobacter globiformis CM-2 belongs to the major extradiol dioxygenase family. J. Bacteriol. 177:1995;1225-1232.
    • (1995) J. Bacteriol. , vol.177 , pp. 1225-1232
    • Boldt, Y.R.1    Sadowsky, M.J.2    Ellis, L.B.M.3    Que, L.J.4    Wackett, L.P.5
  • 5
    • 0022473713 scopus 로고
    • A restriction map of naphthalene catabolic plasmid pWW60-1 and the location of some of its catabolic genes
    • Cane P.A., Williams P.A. A restriction map of naphthalene catabolic plasmid pWW60-1 and the location of some of its catabolic genes. J. Gen. Microbiol. 132:1986;2919-2929.
    • (1986) J. Gen. Microbiol. , vol.132 , pp. 2919-2929
    • Cane, P.A.1    Williams, P.A.2
  • 6
    • 0027386075 scopus 로고
    • Metabolism of dibenzothiophene and naphthalene in Pseudomonas strains: Complete DNA sequence of an upper naphthalene catabolic pathway
    • Denome S.A., Stanley D.C., Olson E.S., Young K.D. Metabolism of dibenzothiophene and naphthalene in Pseudomonas strains: complete DNA sequence of an upper naphthalene catabolic pathway. J. Bacteriol. 175:1993;6890-6901.
    • (1993) J. Bacteriol. , vol.175 , pp. 6890-6901
    • Denome, S.A.1    Stanley, D.C.2    Olson, E.S.3    Young, K.D.4
  • 7
    • 0027937786 scopus 로고
    • Organization and evolution of naphthalene catabolic pathways: Sequence of the DNA encoding 2-hydroxychromene-2-carboxylate isomerase and trans-o-hydroxybenzylidenepyruvate hydratase-aldolase from the NAH7 plasmid
    • Eaton R.W. Organization and evolution of naphthalene catabolic pathways: sequence of the DNA encoding 2-hydroxychromene-2-carboxylate isomerase and trans-o-hydroxybenzylidenepyruvate hydratase-aldolase from the NAH7 plasmid. J. Bacteriol. 176:1994;7757-7762.
    • (1994) J. Bacteriol. , vol.176 , pp. 7757-7762
    • Eaton, R.W.1
  • 8
    • 0029846961 scopus 로고    scopus 로고
    • Evolutionary relationships among extradiol dioxygenases
    • Eltis L.D., Bolin J.T. Evolutionary relationships among extradiol dioxygenases. J. Bacteriol. 178:1996;5930-5937.
    • (1996) J. Bacteriol. , vol.178 , pp. 5930-5937
    • Eltis, L.D.1    Bolin, J.T.2
  • 9
    • 0026544125 scopus 로고
    • Conserved motifs in a divergent nod box of Azorhizobium caulinodans ORS571 reveal a common structure in promoters regulated by LysR-type proteins
    • Goethals K.M., VanMontagu M., Holsters M. Conserved motifs in a divergent nod box of Azorhizobium caulinodans ORS571 reveal a common structure in promoters regulated by LysR-type proteins. Proc. Natl. Acad. Sci. USA. 89:1992;1646-1650.
    • (1992) Proc. Natl. Acad. Sci. USA , vol.89 , pp. 1646-1650
    • Goethals, K.M.1    Vanmontagu, M.2    Holsters, M.3
  • 10
    • 0028215621 scopus 로고
    • Codon usage patterns suggest independent evolution of two catabolic operons on toluene-degradative plasmid TOL pWW0 of Pseudomonas putida
    • Harayama S. Codon usage patterns suggest independent evolution of two catabolic operons on toluene-degradative plasmid TOL pWW0 of Pseudomonas putida. J. Mol. Evol. 38:1994;328-335.
    • (1994) J. Mol. Evol. , vol.38 , pp. 328-335
    • Harayama, S.1
  • 11
    • 0024451702 scopus 로고
    • Bacterial aromatic ring-cleavage enzymes are classified into two different gene families
    • 328-15 333
    • Harayama S., Rekik M. Bacterial aromatic ring-cleavage enzymes are classified into two different gene families. J. Biol. Chem. 264:1989;15 328-15 333.
    • (1989) J. Biol. Chem. , vol.264 , pp. 15
    • Harayama, S.1    Rekik, M.2
  • 12
    • 0027232202 scopus 로고
    • Comparison of the nucleotide sequences of the meta-cleavage pathway genes of TOL plasmid pWW0 from Pseudomonas putida with other meta-cleavage genes suggests that both single and multiple nucleotide substitutions contribute to enzyme evolution
    • Harayama S., Rekik M. Comparison of the nucleotide sequences of the meta-cleavage pathway genes of TOL plasmid pWW0 from Pseudomonas putida with other meta-cleavage genes suggests that both single and multiple nucleotide substitutions contribute to enzyme evolution. Mol. Gen. Genet. 239:1993;81-89.
    • (1993) Mol. Gen. Genet. , vol.239 , pp. 81-89
    • Harayama, S.1    Rekik, M.2
  • 13
    • 0023504677 scopus 로고
    • Evolutionary relationships between catabolic pathways for aromatics: Conservation of gene order and nucleotide sequences of catechol oxidation genes of pWW0 and NAH7 plasmids
    • Harayama S., Rekik M., Wasserfallen A., Bairoch A. Evolutionary relationships between catabolic pathways for aromatics: conservation of gene order and nucleotide sequences of catechol oxidation genes of pWW0 and NAH7 plasmids. Mol. Gen. Genet. 210:1987;241-247.
    • (1987) Mol. Gen. Genet. , vol.210 , pp. 241-247
    • Harayama, S.1    Rekik, M.2    Wasserfallen, A.3    Bairoch, A.4
  • 14
    • 0030977550 scopus 로고    scopus 로고
    • Natural horizontal transfer of a naphthalene dioxygenase gene between bacteria native to a coal tar-contaminated field site
    • Herrick J.B., Stuart-Keil K.G., Ghiorse W.C., Madsen E.L. Natural horizontal transfer of a naphthalene dioxygenase gene between bacteria native to a coal tar-contaminated field site. Appl. Environ. Microbiol. 63:1997;2330-2337.
    • (1997) Appl. Environ. Microbiol. , vol.63 , pp. 2330-2337
    • Herrick, J.B.1    Stuart-Keil, K.G.2    Ghiorse, W.C.3    Madsen, E.L.4
  • 15
    • 0026095338 scopus 로고
    • DNA sequence determination of the TOL plasmid (pWW0) xylGFJ genes of Pseudomonas putida: Implications for the evolution of aromatic catabolism
    • Horn J.M., Harayama S., Timmis K.N. DNA sequence determination of the TOL plasmid (pWW0) xylGFJ genes of Pseudomonas putida: implications for the evolution of aromatic catabolism. Mol. Microbiol. 5:1991;2459-2474.
    • (1991) Mol. Microbiol. , vol.5 , pp. 2459-2474
    • Horn, J.M.1    Harayama, S.2    Timmis, K.N.3
  • 16
    • 0027138818 scopus 로고
    • Regulation of the catechol 1, 2-dioxygenase- And phenol monooxygenase-encoding pheBA operon in Pseudomonas putida PaW85
    • Kasak L., Horak R., Nurk A., Talvik K., Kivisaar M. Regulation of the catechol 1, 2-dioxygenase- and phenol monooxygenase-encoding pheBA operon in Pseudomonas putida PaW85. J. Bacteriol. 175:1993;8038-8042.
    • (1993) J. Bacteriol. , vol.175 , pp. 8038-8042
    • Kasak, L.1    Horak, R.2    Nurk, A.3    Talvik, K.4    Kivisaar, M.5
  • 18
    • 0028327636 scopus 로고
    • Cloning and characterization of a chromosomal gene cluster, pah, that encodes the upper pathway for phenanthrene and naphthalene utilization by Pseudomonas putida OUS82
    • Kiyohara H., Torigoe S., Kaida N., Asaki T., Iida T., Hayashi H., Takizawa N. Cloning and characterization of a chromosomal gene cluster, pah, that encodes the upper pathway for phenanthrene and naphthalene utilization by Pseudomonas putida OUS82. J. Bacteriol. 176:1994;2439-2443.
    • (1994) J. Bacteriol. , vol.176 , pp. 2439-2443
    • Kiyohara, H.1    Torigoe, S.2    Kaida, N.3    Asaki, T.4    Iida, T.5    Hayashi, H.6    Takizawa, N.7
  • 19
    • 0020328880 scopus 로고
    • Structural analysis of insertion sequence IS5
    • Kröger M., Hobom G. Structural analysis of insertion sequence IS5. Nature. 297:1982;159-162.
    • (1982) Nature , vol.297 , pp. 159-162
    • Kröger, M.1    Hobom, G.2
  • 20
    • 0001776858 scopus 로고    scopus 로고
    • Evolution of regulatory systems of biodegradative pathways
    • T. et al. Nakazawa. Washington, DC: ASM
    • Parsek M.R., McFall S.M., Chakrabarty A.M. Evolution of regulatory systems of biodegradative pathways. Nakazawa T., et al. Molecular Biology of Pseudomonads. 1996;135-152 ASM, Washington, DC.
    • (1996) Molecular Biology of Pseudomonads , pp. 135-152
    • Parsek, M.R.1    McFall, S.M.2    Chakrabarty, A.M.3
  • 21
    • 0028970727 scopus 로고
    • The 4-hydroxy-2-oxovalerate aldolase and acetaldehyde dehydrogenase (acylating) encoded by the nahM and nahO genes of the naphthalene catabolic plasmid pWW60-22 provide further evidence of conservation of meta-cleavage pathway gene sequences
    • Platt A., Shingler V., Taylor S.C., Williams P.A. The 4-hydroxy-2-oxovalerate aldolase and acetaldehyde dehydrogenase (acylating) encoded by the nahM and nahO genes of the naphthalene catabolic plasmid pWW60-22 provide further evidence of conservation of meta-cleavage pathway gene sequences. Microbiology. 141:1995;2223-2233.
    • (1995) Microbiology , vol.141 , pp. 2223-2233
    • Platt, A.1    Shingler, V.2    Taylor, S.C.3    Williams, P.A.4
  • 23
    • 0028226690 scopus 로고
    • Comparative biochemical and genetic analysis of naphthalene degradation among Pseudomonas stutzeri strains
    • Rosselló-Mora R.A., Lalucat J., García-Valdés E. Comparative biochemical and genetic analysis of naphthalene degradation among Pseudomonas stutzeri strains. Appl. Environ. Microbiol. 60:1994;966-972.
    • (1994) Appl. Environ. Microbiol. , vol.60 , pp. 966-972
    • Rosselló-Mora, R.A.1    Lalucat, J.2    García-Valdés, E.3
  • 25
    • 0008962710 scopus 로고
    • Homology between nucleotide sequences of promoter regions of nah and sal operons of NAH7 plasmid of Pseudomonas putida
    • Schell M.A. Homology between nucleotide sequences of promoter regions of nah and sal operons of NAH7 plasmid of Pseudomonas putida. Proc. Natl. Acad. Sci. USA. 83:1986;369-373.
    • (1986) Proc. Natl. Acad. Sci. USA , vol.83 , pp. 369-373
    • Schell, M.A.1
  • 26
    • 0022481598 scopus 로고
    • Identification of the nahR gene product and nucleotide sequences required for its activation of the sal operon
    • Schell M.A., Wender P.E. Identification of the nahR gene product and nucleotide sequences required for its activation of the sal operon. J. Bacteriol. 166:1986;9-14.
    • (1986) J. Bacteriol. , vol.166 , pp. 9-14
    • Schell, M.A.1    Wender, P.E.2
  • 27
    • 0026567783 scopus 로고
    • Nucleotide sequence and functional analysis of the complete phenol/3,4-dimethylphenol catabolic pathway of Pseudomonas sp. strain CF600
    • Shingler V., Powlowski J., Marklund U. Nucleotide sequence and functional analysis of the complete phenol/3,4-dimethylphenol catabolic pathway of Pseudomonas sp. strain CF600. J. Bacteriol. 174:1992;711-724.
    • (1992) J. Bacteriol. , vol.174 , pp. 711-724
    • Shingler, V.1    Powlowski, J.2    Marklund, U.3
  • 29
    • 0028280923 scopus 로고
    • Identification and characterization of genes encoding polycyclic aromatic hydrocarbon dioxygenase and polycyclic aromatic hydrocarbon dihydrodiol dehydrogenase in Pseudomonas putida OUS82
    • Takizawa N., Kaida N., Torigoe S., Moritani T., Sawada T., Satoh S., Kiyohara H. Identification and characterization of genes encoding polycyclic aromatic hydrocarbon dioxygenase and polycyclic aromatic hydrocarbon dihydrodiol dehydrogenase in Pseudomonas putida OUS82. J. Bacteriol. 176:1994;2444-2449.
    • (1994) J. Bacteriol. , vol.176 , pp. 2444-2449
    • Takizawa, N.1    Kaida, N.2    Torigoe, S.3    Moritani, T.4    Sawada, T.5    Satoh, S.6    Kiyohara, H.7
  • 30
    • 0028672045 scopus 로고
    • The evolution of pathways for aromatic hydrocarbon oxidation in Pseudomonas
    • Williams P.A., Sayers J.R. The evolution of pathways for aromatic hydrocarbon oxidation in Pseudomonas. Biodegradation. 5:1994;195-217.
    • (1994) Biodegradation , vol.5 , pp. 195-217
    • Williams, P.A.1    Sayers, J.R.2
  • 32
    • 0020092111 scopus 로고
    • Plasmid gene organization: Naphthalene/salicylate oxidation
    • Yen K.-M., Gunsalus I.C. Plasmid gene organization: naphthalene/salicylate oxidation. Proc. Natl. Acad. Sci. USA. 79:1982;874-878.
    • (1982) Proc. Natl. Acad. Sci. USA , vol.79 , pp. 874-878
    • Yen, K.-M.1    Gunsalus, I.C.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.