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Volumn 179, Issue 15, 1997, Pages 4850-4858

Identification and characterization of genes encoding carbazole 1,9a- dioxygenase in Pseudomonas sp. strain CA10

Author keywords

[No Author keywords available]

Indexed keywords

BACTERIAL ENZYME; BIPHENYL DERIVATIVE; CARBAZOLE DERIVATIVE; DIBENZODIOXIN DERIVATIVE; DIBENZOFURAN DERIVATIVE; NAPHTHALENE DERIVATIVE; OXYGENASE; PHENANTHRENE DERIVATIVE; PLASMID DNA; POLYCYCLIC AROMATIC COMPOUND;

EID: 0030744612     PISSN: 00219193     EISSN: None     Source Type: Journal    
DOI: 10.1128/jb.179.15.4850-4858.1997     Document Type: Article
Times cited : (171)

References (43)
  • 1
    • 0030000545 scopus 로고    scopus 로고
    • Cloning, nucleotide sequence, and characterization of the genes encoding enzymes involved in the degradation of cumene to 2-hydroxy-6-oxo-7-methylocta-2,4-dienoic acid in Pseudomonas fluorescens IP01
    • Aoki, H., T. Kimura, H. Habe, H. Yamane, T. Kodama, and T. Omori. 1996. Cloning, nucleotide sequence, and characterization of the genes encoding enzymes involved in the degradation of cumene to 2-hydroxy-6-oxo-7-methylocta-2,4-dienoic acid in Pseudomonas fluorescens IP01. J. Ferment. Bioeng. 81:187-196.
    • (1996) J. Ferment. Bioeng. , vol.81 , pp. 187-196
    • Aoki, H.1    Kimura, T.2    Habe, H.3    Yamane, H.4    Kodama, T.5    Omori, T.6
  • 2
    • 0014398462 scopus 로고
    • Molecular geometry and carcinogenic activity of aromatic compounds. New perspectives
    • Arcos, J. S., and M. F. Argus. 1968. Molecular geometry and carcinogenic activity of aromatic compounds. New perspectives. Adv. Cancer Res. 11:305-471.
    • (1968) Adv. Cancer Res. , vol.11 , pp. 305-471
    • Arcos, J.S.1    Argus, M.F.2
  • 3
    • 0028953835 scopus 로고
    • The evolutionary relationship of biphenyl dioxygenase from Gram-positive Rhodococcus globerulus P6 to multicomponent dioxygenases from Gram-negative bacteria
    • Asturias, J. A., E. Diaz, and K. N. Timmis. 1995. The evolutionary relationship of biphenyl dioxygenase from Gram-positive Rhodococcus globerulus P6 to multicomponent dioxygenases from Gram-negative bacteria. Gene 156: 11-18.
    • (1995) Gene , vol.156 , pp. 11-18
    • Asturias, J.A.1    Diaz, E.2    Timmis, K.N.3
  • 4
    • 0018800089 scopus 로고
    • A rapid alkaline extraction procedure for screening recombinant plasmid DNA
    • Birnboim, H. C., and J. Doly. 1979. A rapid alkaline extraction procedure for screening recombinant plasmid DNA. Nucleic Acids Res. 7:1513-1523.
    • (1979) Nucleic Acids Res. , vol.7 , pp. 1513-1523
    • Birnboim, H.C.1    Doly, J.2
  • 5
    • 0027484182 scopus 로고
    • Dibenzofuran 4,4a-dioxygenase from Sphingomonas sp. strain RW1: Angular dioxygenation by a three-component enzyme system
    • Bünz, P. V., and A. M. Cook. 1993. Dibenzofuran 4,4a-dioxygenase from Sphingomonas sp. strain RW1: angular dioxygenation by a three-component enzyme system. J. Bacteriol. 175:6467-6475.
    • (1993) J. Bacteriol. , vol.175 , pp. 6467-6475
    • Bünz, P.V.1    Cook, A.M.2
  • 6
    • 0028799572 scopus 로고
    • Sequence analysis of the gene cluster encoding toluene-3-monooxygenase from Pseudomonas pickettii PKO1
    • Byrne, A. M., J. J. Kukor, and R. H. Olsen. 1995. Sequence analysis of the gene cluster encoding toluene-3-monooxygenase from Pseudomonas pickettii PKO1. Gene 154:65-70.
    • (1995) Gene , vol.154 , pp. 65-70
    • Byrne, A.M.1    Kukor, J.J.2    Olsen, R.H.3
  • 8
    • 0018378931 scopus 로고
    • Bacterial and fungal oxidation of dibenzofuran
    • Cerniglia, C. E., J. C. Morgan, and D. T. Gibson. 1979. Bacterial and fungal oxidation of dibenzofuran. Biochem. J. 180:175-185.
    • (1979) Biochem. J. , vol.180 , pp. 175-185
    • Cerniglia, C.E.1    Morgan, J.C.2    Gibson, D.T.3
  • 9
    • 0022520181 scopus 로고
    • Characterization of a plasmid-specific pathway for catabolism of isopropylbenzene in Pseudomonas putida RE204
    • Eaton, R. W., and K. N. Timmis. 1986. Characterization of a plasmid-specific pathway for catabolism of isopropylbenzene in Pseudomonas putida RE204. J. Bacteriol. 168:123-131.
    • (1986) J. Bacteriol. , vol.168 , pp. 123-131
    • Eaton, R.W.1    Timmis, K.N.2
  • 10
    • 0020612907 scopus 로고
    • Expression of naphthalene oxidation genes in Escherichia coli results in the biosynthesis of indigo
    • Ensley, B. D., B. J. Ratzkin, T. D. Osslund, M. J. Simon, L. P. Wackett, and D. T. Gibson. 1983. Expression of naphthalene oxidation genes in Escherichia coli results in the biosynthesis of indigo. Science 222:167-169.
    • (1983) Science , vol.222 , pp. 167-169
    • Ensley, B.D.1    Ratzkin, B.J.2    Osslund, T.D.3    Simon, M.J.4    Wackett, L.P.5    Gibson, D.T.6
  • 11
    • 0027368828 scopus 로고
    • Enhanced biodegradation of polychlorinated biphenyls after site-directed mutagenesis of a biphenyl dioxygenase gene
    • Erickson, B. D., and F. J. Mondello. 1993. Enhanced biodegradation of polychlorinated biphenyls after site-directed mutagenesis of a biphenyl dioxygenase gene. Appl. Environ. Microbiol. 59:3858-3862.
    • (1993) Appl. Environ. Microbiol. , vol.59 , pp. 3858-3862
    • Erickson, B.D.1    Mondello, F.J.2
  • 13
    • 0030053413 scopus 로고    scopus 로고
    • Carbazole degradation by Pseudomonas sp. LD2: Metabolic characteristics and the identification of some metabolites
    • Gieg, L. M., A. Otter, and P. M. Fedorak. 1996. Carbazole degradation by Pseudomonas sp. LD2: metabolic characteristics and the identification of some metabolites. Environ. Sci. Technol. 30:575-585.
    • (1996) Environ. Sci. Technol. , vol.30 , pp. 575-585
    • Gieg, L.M.1    Otter, A.2    Fedorak, P.M.3
  • 14
    • 0025919710 scopus 로고
    • Indigenous and enhanced mineralization of pyrene, benzo[a]pyrene, and carbazole in soils
    • Grosser, R. J., D. Warshawsky, and J. R. Vestal. 1991. Indigenous and enhanced mineralization of pyrene, benzo[a]pyrene, and carbazole in soils. Appl. Environ. Microbiol. 57:3462-3469.
    • (1991) Appl. Environ. Microbiol. , vol.57 , pp. 3462-3469
    • Grosser, R.J.1    Warshawsky, D.2    Vestal, J.R.3
  • 15
    • 0029996226 scopus 로고    scopus 로고
    • Cloning and nucleotide sequences of the genes involved in the meta-cleavage pathway of cumene degradation in Pseudomonas fluorescens IP01
    • Habe, H., T. Kimura, H. Nojiri, H. Yamane, and T. Omori. 1996. Cloning and nucleotide sequences of the genes involved in the meta-cleavage pathway of cumene degradation in Pseudomonas fluorescens IP01. J. Ferment. Bioeng. 81:247-254.
    • (1996) J. Ferment. Bioeng. , vol.81 , pp. 247-254
    • Habe, H.1    Kimura, T.2    Nojiri, H.3    Yamane, H.4    Omori, T.5
  • 16
    • 0022573421 scopus 로고
    • Genetic analysis of a relaxed substrate specificity aromatic ring dioxygenase, toluene 1,2-dioxygenase encoded by TOL plasmid pWW0 of Pseudomonas putida
    • Harayama, S., M. Rekik, and K. N. Timmis. 1986. Genetic analysis of a relaxed substrate specificity aromatic ring dioxygenase, toluene 1,2-dioxygenase encoded by TOL plasmid pWW0 of Pseudomonas putida. Mol. Gen. Genet. 202:226-234.
    • (1986) Mol. Gen. Genet. , vol.202 , pp. 226-234
    • Harayama, S.1    Rekik, M.2    Timmis, K.N.3
  • 17
    • 0026805891 scopus 로고
    • Functional and evolutionary relationships among diverse oxygenases
    • Harayama, S., and M. Kok. 1992. Functional and evolutionary relationships among diverse oxygenases. Annu. Rev. Microbiol. 46:565-601.
    • (1992) Annu. Rev. Microbiol. , vol.46 , pp. 565-601
    • Harayama, S.1    Kok, M.2
  • 19
    • 0021253525 scopus 로고
    • Unidirectional digestion with exonuclease III creates targeted breakpoints for DNA sequencing
    • Henikoff, S. 1984. Unidirectional digestion with exonuclease III creates targeted breakpoints for DNA sequencing. Gene 28:351-359.
    • (1984) Gene , vol.28 , pp. 351-359
    • Henikoff, S.1
  • 20
    • 85007949049 scopus 로고
    • Microbiol transformation of carbazole to anthranilic acid by Pseudomonas stutzeri
    • Hisatsuka, K., and M. Sato. 1994. Microbiol transformation of carbazole to anthranilic acid by Pseudomonas stutzeri. Biosci. Biotechnol. Biochem. 58: 213-214.
    • (1994) Biosci. Biotechnol. Biochem. , vol.58 , pp. 213-214
    • Hisatsuka, K.1    Sato, M.2
  • 21
    • 0028287911 scopus 로고
    • The biphenyl/polychlorinated biphenyl-degradation locus (bph) of Pseudomonas sp. LB400 encodes four additional metabolic enzymes
    • Hofer, B., S. Backhaus, and K. N. Timmis. 1994. The biphenyl/polychlorinated biphenyl-degradation locus (bph) of Pseudomonas sp. LB400 encodes four additional metabolic enzymes. Gene 144:9-16.
    • (1994) Gene , vol.144 , pp. 9-16
    • Hofer, B.1    Backhaus, S.2    Timmis, K.N.3
  • 22
    • 0029953163 scopus 로고    scopus 로고
    • Site-directed mutagenesis of conserved amino acids in the alpha subunit of toluene dioxygenase: Potential mononuclear non-heme iron coordination sites
    • Jiang, H., R. E. Parales, N. A. Lynch, and D. T. Gibson. 1996. Site-directed mutagenesis of conserved amino acids in the alpha subunit of toluene dioxygenase: potential mononuclear non-heme iron coordination sites. J. Bacteriol. 178:3133-3139.
    • (1996) J. Bacteriol. , vol.178 , pp. 3133-3139
    • Jiang, H.1    Parales, R.E.2    Lynch, N.A.3    Gibson, D.T.4
  • 23
    • 0028348664 scopus 로고
    • Identification of the bphA4 gene encoding ferredoxin reductase involved in biphenyl and polychlorinated hiphenyl degradation in Pseudomonas sp. strain KKS102
    • Kikuchi, Y., Y. Nagata, M. Hinata, K. Kimbara, M. Fukuda, K. Yano, and M. Takagi. 1994. Identification of the bphA4 gene encoding ferredoxin reductase involved in biphenyl and polychlorinated hiphenyl degradation in Pseudomonas sp. strain KKS102. J. Bacteriol. 176:1689-1694.
    • (1994) J. Bacteriol. , vol.176 , pp. 1689-1694
    • Kikuchi, Y.1    Nagata, Y.2    Hinata, M.3    Kimbara, K.4    Fukuda, M.5    Yano, K.6    Takagi, M.7
  • 24
    • 85007754941 scopus 로고
    • Isolation of bacteria degrading carbazole under microaerobic condition, i.e., nitrogen gas substituted conditions
    • Kobayashi, T., R. Kurane, K. Nakajima, Y. Nakamura, K. Kirimura, and S. Usami. 1995. Isolation of bacteria degrading carbazole under microaerobic condition, i.e., nitrogen gas substituted conditions. Biosci. Biotechnol. Biochem. 59:932-933.
    • (1995) Biosci. Biotechnol. Biochem. , vol.59 , pp. 932-933
    • Kobayashi, T.1    Kurane, R.2    Nakajima, K.3    Nakamura, Y.4    Kirimura, K.5    Usami, S.6
  • 25
    • 0024262983 scopus 로고
    • Cloning, nucleotide sequence and characterization of genes encoding naphthalene dioxygenase of Pseudomonas putida strain NCIB9816
    • Kurkela, S., H. Lehväslaiho, E. T. Palva, and T. H. Teeri. 1988. Cloning, nucleotide sequence and characterization of genes encoding naphthalene dioxygenase of Pseudomonas putida strain NCIB9816. Gene 73:355-362.
    • (1988) Gene , vol.73 , pp. 355-362
    • Kurkela, S.1    Lehväslaiho, H.2    Palva, E.T.3    Teeri, T.H.4
  • 26
    • 0014949207 scopus 로고
    • Cleavage of structural proteins during the assembly of the head of bacteriophage T4
    • Laemmli, U. K. 1970. Cleavage of structural proteins during the assembly of the head of bacteriophage T4. Nature (London) 227:680-685.
    • (1970) Nature (London) , vol.227 , pp. 680-685
    • Laemmli, U.K.1
  • 27
    • 0029059059 scopus 로고
    • Characterization of hiphenyl catabolic genes of gram-positive polychlorinated biphenyl degrader Rhodococcus sp. strain RHA1
    • Masai, E., A. Yamada, J. M. Healy, T. Hatta, K. Kimbara, M. Fukuda, and K. Yano. 1995. Characterization of hiphenyl catabolic genes of gram-positive polychlorinated biphenyl degrader Rhodococcus sp. strain RHA1. Appl. Environ. Microbiol. 61:2079-2085.
    • (1995) Appl. Environ. Microbiol. , vol.61 , pp. 2079-2085
    • Masai, E.1    Yamada, A.2    Healy, J.M.3    Hatta, T.4    Kimbara, K.5    Fukuda, M.6    Yano, K.7
  • 28
    • 0026743341 scopus 로고
    • The electron-transport proteins of hydroxylating bacterial dioxygenases
    • Mason, J. R., and R. Commack. 1992. The electron-transport proteins of hydroxylating bacterial dioxygenases. Annu. Rev. Microbiol. 46:277-305.
    • (1992) Annu. Rev. Microbiol. , vol.46 , pp. 277-305
    • Mason, J.R.1    Commack, R.2
  • 29
    • 0026017943 scopus 로고
    • Nucleotide sequences of the Acinetobacter calcoaceticus benABC genes for benzoate 1,2-dioxygenase reveal evolutionary relationships among multicomponent oxygenases
    • Neidle, E. L., C. Hartnett, L. N. Ornston, A. Bairoch, M. Rekik, and S. Harayama. 1991. Nucleotide sequences of the Acinetobacter calcoaceticus benABC genes for benzoate 1,2-dioxygenase reveal evolutionary relationships among multicomponent oxygenases. J. Bacteriol. 173:5385-5395.
    • (1991) J. Bacteriol. , vol.173 , pp. 5385-5395
    • Neidle, E.L.1    Hartnett, C.2    Ornston, L.N.3    Bairoch, A.4    Rekik, M.5    Harayama, S.6
  • 30
    • 0024726277 scopus 로고
    • Examination of protein sequence homologies. 5. New perspectives on evolution between bacterial and chloroplast-type ferredoxins inferred from sequence evidence
    • Otaka, E., and T. Ooi. 1989. Examination of protein sequence homologies. 5. New perspectives on evolution between bacterial and chloroplast-type ferredoxins inferred from sequence evidence. J. Mol. Evol. 29:246-254.
    • (1989) J. Mol. Evol. , vol.29 , pp. 246-254
    • Otaka, E.1    Ooi, T.2
  • 32
    • 0001367075 scopus 로고
    • Isolation and properties of an iron-protein from the (reduced coenzyme O)-cytochrome C reductase complex of the respiratory chain
    • Rieske, J. S., D. H. Maclennan, and R. Coleman. 1964. Isolation and properties of an iron-protein from the (reduced coenzyme O)-cytochrome C reductase complex of the respiratory chain. Biochem. Biophys. Res. Commun. 15:338-344.
    • (1964) Biochem. Biophys. Res. Commun. , vol.15 , pp. 338-344
    • Rieske, J.S.1    Maclennan, D.H.2    Coleman, R.3
  • 34
    • 0030855128 scopus 로고    scopus 로고
    • Cloning of genes involved in carbazole degradation of Pseudomonas sp. strain CA10: Nucleotide sequences of genes and characterization of meta-cleavage enzymes and hydrolase
    • Sato, S. I., N. Ouchiyama, T. Kimura, H. Nojiri, H. Yamane, and T. Omori. 1997. Cloning of genes involved in carbazole degradation of Pseudomonas sp. strain CA10: nucleotide sequences of genes and characterization of meta-cleavage enzymes and hydrolase. J. Bacteriol. 179:4841-4849.
    • (1997) J. Bacteriol. , vol.179 , pp. 4841-4849
    • Sato, S.I.1    Ouchiyama, N.2    Kimura, T.3    Nojiri, H.4    Yamane, H.5    Omori, T.6
  • 35
    • 0016610995 scopus 로고
    • Determination of cistron specificity in bacterial ribosomes
    • Shine, J., and L. Dalgarno. 1975. Determination of cistron specificity in bacterial ribosomes. Nature 254:34-38.
    • (1975) Nature , vol.254 , pp. 34-38
    • Shine, J.1    Dalgarno, L.2
  • 37
    • 0026640186 scopus 로고
    • Analysis of bph operon from the polychlorinated biphenyl-degrading strain of Pseudomonas pseudoalcaligenes KF707
    • Taira, K., J. Hirose, S. Hayashida, and K. Furukawa. 1992. Analysis of bph operon from the polychlorinated biphenyl-degrading strain of Pseudomonas pseudoalcaligenes KF707. J. Biol. Chem. 267:4844-4853.
    • (1992) J. Biol. Chem. , vol.267 , pp. 4844-4853
    • Taira, K.1    Hirose, J.2    Hayashida, S.3    Furukawa, K.4
  • 39
    • 0027968068 scopus 로고
    • CLUSTAL W: Improving the sensitivity of progressive multiple sequence alignment through sequence weighting, positions-specific gap penalties and weight matrix choice
    • Thompson, J. D., D. G. Higgins, and T. J. Gibson. 1994. CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, positions-specific gap penalties and weight matrix choice. Nucleic Acids Res. 22:4673-4680.
    • (1994) Nucleic Acids Res. , vol.22 , pp. 4673-4680
    • Thompson, J.D.1    Higgins, D.G.2    Gibson, T.J.3
  • 40
    • 0023634094 scopus 로고
    • Production of single-stranded plasmid DNA
    • Vieira, J., and J. Messing. 1987. Production of single-stranded plasmid DNA. Methods Enzymol. 153:3-11.
    • (1987) Methods Enzymol. , vol.153 , pp. 3-11
    • Vieira, J.1    Messing, J.2
  • 41
    • 0029920974 scopus 로고    scopus 로고
    • The broad substrate chlorobenzene dioxygenase and cis-chlorobenzene dihydrodiol dehydrogenase of Pseudomonas sp. strain P51 are linked evolutionary to the enzymes for benzene and toluene degradation
    • Werten, C., H. E. Kohler, and J. R. van der Meer. 1996. The broad substrate chlorobenzene dioxygenase and cis-chlorobenzene dihydrodiol dehydrogenase of Pseudomonas sp. strain P51 are linked evolutionary to the enzymes for benzene and toluene degradation. J. Biol. Chem. 271:4009-4016.
    • (1996) J. Biol. Chem. , vol.271 , pp. 4009-4016
    • Werten, C.1    Kohler, H.E.2    Van Der Meer, J.R.3
  • 43
    • 0024427069 scopus 로고
    • Toluene degradation by Pseudomonas putida F1: Nucleotide sequence of the todC1C2RADE genes and their expression in Escherichia coli
    • Zylstra, G. J., and D. T. Gibson. 1989. Toluene degradation by Pseudomonas putida F1: nucleotide sequence of the todC1C2RADE genes and their expression in Escherichia coli. J. Biol. Chem. 264:14940-14946.
    • (1989) J. Biol. Chem. , vol.264 , pp. 14940-14946
    • Zylstra, G.J.1    Gibson, D.T.2


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