-
1
-
-
0026555817
-
Diversity among Fibrobacter isolates: Towards a phylogenetic classification
-
AMANN, R. I., LIN, C., KEY, R., MONTGOMERY, L., STAHL, D. A.: Diversity among Fibrobacter isolates: Towards a phylogenetic classification. System. Appl. Microbiol. 15, 23-31 (1992).
-
(1992)
System. Appl. Microbiol.
, vol.15
, pp. 23-31
-
-
Amann, R.I.1
Lin, C.2
Key, R.3
Montgomery, L.4
Stahl, D.A.5
-
2
-
-
0028946084
-
Phylogenetic identification and in situ detection of individual microbial cells without cultivation
-
AMANN, R. I., LUDWIG, W., SCHLEIFER, K.-H.: Phylogenetic identification and in situ detection of individual microbial cells without cultivation. Microbiol. Rev. 59, 143-169 (1995).
-
(1995)
Microbiol. Rev.
, vol.59
, pp. 143-169
-
-
Amann, R.I.1
Ludwig, W.2
Schleifer, K.-H.3
-
3
-
-
0025294528
-
Combination of 16S rRNA-target oligonucleotide probes with flow cytometry for analyzing mixed microbial populations
-
AMANN, R. I., BINDER, B. J., OLSON, R. J., CHISHOLM, S. W., DEVEREUX, R., STAHL, D. A.: Combination of 16S rRNA-target oligonucleotide probes with flow cytometry for analyzing mixed microbial populations. Appl. Environ. Microbiol. 56, 1919-1925 (1990).
-
(1990)
Appl. Environ. Microbiol.
, vol.56
, pp. 1919-1925
-
-
Amann, R.I.1
Binder, B.J.2
Olson, R.J.3
Chisholm, S.W.4
Devereux, R.5
Stahl, D.A.6
-
4
-
-
0027941351
-
GenBank
-
BENSON, D. A., BOGUSKI, M., LIPMAN, D. J., OSTELL, J.: GenBank. Nucleic Acids Res. 22, 3441-3444 (1994).
-
(1994)
Nucleic Acids Res.
, vol.22
, pp. 3441-3444
-
-
Benson, D.A.1
Boguski, M.2
Lipman, D.J.3
Ostell, J.4
-
5
-
-
0019513663
-
Gene organization and primary structure of a ribosomal RNa operon from Escherichia coli
-
BROSIUS, J., DULL, T. L., SLEETER, D. D., NOLLER, H. E: Gene organization and primary structure of a ribosomal RNA operon from Escherichia coli. J. Mol. Biol. 148, 107-127 (1981):
-
(1981)
J. Mol. Biol.
, vol.148
, pp. 107-127
-
-
Brosius, J.1
Dull, T.L.2
Sleeter, D.D.3
Noller, H.E.4
-
6
-
-
0025743732
-
"Touchdown" PCR to circumvent spurious priming during gene amplification
-
DON, R. H., COX, P. T., WAINWRIGHT, B. J., BAKER, K., MATTICK, J. S.: "Touchdown" PCR to circumvent spurious priming during gene amplification. Nucleic Acids Res. 19, 4998 (1991).
-
(1991)
Nucleic Acids Res.
, vol.19
, pp. 4998
-
-
Don, R.H.1
Cox, P.T.2
Wainwright, B.J.3
Baker, K.4
Mattick, J.S.5
-
7
-
-
0028088186
-
The European Bioinformatics Institute (EBI) databases
-
EMMERT, D. B., STOEHR, P. J., STOESSER, G., CAMERON, G. N.: The European Bioinformatics Institute (EBI) databases. Nucleic Acids Res. 22, 3445-3449 (1994).
-
(1994)
Nucleic Acids Res.
, vol.22
, pp. 3445-3449
-
-
Emmert, D.B.1
Stoehr, P.J.2
Stoesser, G.3
Cameron, G.N.4
-
8
-
-
0000122573
-
Phylip - Phylogeny inference package
-
FELSENSTEIN, J.: Phylip - Phylogeny inference package. Cladistics 5, 164-166 (1989).
-
(1989)
Cladistics
, vol.5
, pp. 164-166
-
-
Felsenstein, J.1
-
10
-
-
0542393557
-
Principles of enrichment, isolation, cultivation and preservation of bacteria
-
(A. BALOWS, H. G. TRÜPER, M. DWORKIN, W. HARDER, K. SCHLEIFER, eds.). 2nd ed., Springer-Verlag, New York
-
GOTTSCHAL, J. C., HARDER, W., PRINS, R. A.: Principles of enrichment, isolation, cultivation and preservation of bacteria, pp. 149-196. In: The Prokaryotes (A. BALOWS, H. G. TRÜPER, M. DWORKIN, W. HARDER, K. SCHLEIFER, eds.). Vol. 1, 2nd ed., Springer-Verlag, New York 1992.
-
(1992)
The Prokaryotes
, vol.1
, pp. 149-196
-
-
Gottschal, J.C.1
Harder, W.2
Prins, R.A.3
-
11
-
-
0001857117
-
16S/23S rRNA Sequencing
-
(E. STACKEBRANDT, M. GOODFELLOW, eds.). Chichester, John Wiley & Sons Ltd.
-
LANE, D. J.: 16S/23S rRNA Sequencing, pp. 115-175. In: Nucleic acid techniques in bacterial systematics (E. STACKEBRANDT, M. GOODFELLOW, eds.). Chichester, John Wiley & Sons Ltd. 1991.
-
(1991)
Nucleic Acid Techniques in Bacterial Systematics
, pp. 115-175
-
-
Lane, D.J.1
-
12
-
-
0028170111
-
The ribosomal database project
-
MAIDAK, B. L., LARSEN, N., MCCAUGHEY, M. J., OVERBEEK, R., OLSEN, G. J., FOGEL, K., BLANDY, J., WOESE, C. R.: The ribosomal database project. Nucleic Acids Res. 22, 3485-3487 (1994).
-
(1994)
Nucleic Acids Res.
, vol.22
, pp. 3485-3487
-
-
Maidak, B.L.1
Larsen, N.2
Mccaughey, M.J.3
Overbeek, R.4
Olsen, G.J.5
Fogel, K.6
Blandy, J.7
Woese, C.R.8
-
13
-
-
0027068041
-
Phylogenetic oligodeoxynucleotide probes for the major subclasses of proteobacteria: Problems and solutions
-
MANZ, W., AMANN, R., LUDWIG, W., WAGNER, M., SCHLEIFER, K.-H.: Phylogenetic oligodeoxynucleotide probes for the major subclasses of proteobacteria: Problems and solutions. System. Appl. Microbiol. 15, 593-600 (1992).
-
(1992)
System. Appl. Microbiol.
, vol.15
, pp. 593-600
-
-
Manz, W.1
Amann, R.2
Ludwig, W.3
Wagner, M.4
Schleifer, K.-H.5
-
14
-
-
0001823647
-
Bacterial community fingerprinting of amplified 16S and 23S ribosomal DNA gene sequences and restriction endonuclease analyses (ARDRA)
-
(A. D. L. AKKERMANS, J. D. VAN ELSAS, F. J. DE BRUIJN, eds.). 2nd ed., Dordrecht, Kluwer
-
MASSOL-DEYA, A. A., ODELSON, D. A., HICKEY, R. F., TIEDJE, J. M.: Bacterial community fingerprinting of amplified 16S and 23S ribosomal DNA gene sequences and restriction endonuclease analyses (ARDRA), pp. 1-8. In: Molecular Microbial Ecology Manual (A. D. L. AKKERMANS, J. D. VAN ELSAS, F. J. DE BRUIJN, eds.). 2nd ed., Dordrecht, Kluwer 1995.
-
(1995)
Molecular Microbial Ecology Manual
, pp. 1-8
-
-
Massol-Deya, A.A.1
Odelson, D.A.2
Hickey, R.F.3
Tiedje, J.M.4
-
15
-
-
0028976424
-
Phylogenetic diversity of the bacterial community from a microbial mat at an active, hydrothermal vent system, Loihi Seamount, Hawaii
-
MOYER, C. L., DOBBS, F. C., KARL, D. M.: Phylogenetic diversity of the bacterial community from a microbial mat at an active, hydrothermal vent system, Loihi Seamount, Hawaii. Appl. Environ. Microbiol. 61, 1555-1562 (1995).
-
(1995)
Appl. Environ. Microbiol.
, vol.61
, pp. 1555-1562
-
-
Moyer, C.L.1
Dobbs, F.C.2
Karl, D.M.3
-
16
-
-
0008105172
-
Determination of the genetic diversity of microbial communities using DGGE analysis of PCR-amplified 16S rDNA
-
Microbial Mats (L. J. STAL, P. CAUMETTE, eds.). Berlin, Heidelberg, Springer Verlag
-
MUYZER, D., DE WAAL, E. C.: Determination of the genetic diversity of microbial communities using DGGE analysis of PCR-amplified 16S rDNA, pp. 207-214. In: Microbial Mats (L. J. STAL, P. CAUMETTE, eds.). NATO ASI Series, Ecological Sciences Vol. 35, Berlin, Heidelberg, Springer Verlag 1994.
-
(1994)
NATO ASI Series, Ecological Sciences
, vol.35
, pp. 207-214
-
-
Muyzer, D.1
De Waal, E.C.2
-
17
-
-
0027460328
-
Profiling of complex microbial populations by denaturing gradient gel electrophoresis analysis of polymerase chain reaction-amplified genes coding for 16S rRNA
-
MUYZER, G., DE WAAL, E. C., UITTERLINDEN, A. G.: Profiling of complex microbial populations by denaturing gradient gel electrophoresis analysis of polymerase chain reaction-amplified genes coding for 16S rRNA. Appl. Environ. Microbiol. 59, 695-700 (1993).
-
(1993)
Appl. Environ. Microbiol.
, vol.59
, pp. 695-700
-
-
Muyzer, G.1
De Waal, E.C.2
Uitterlinden, A.G.3
-
18
-
-
0029097821
-
Phylogenetic relationships of Thiomicrospira species and their identification in deep-sea hydrothermal vent samples by denaturing gradient gel electrophoresis of 16S rDNA fragments
-
MUYZER, G., TESKE, A., WIRSEN, C. O., JANNASCH, H. W.: Phylogenetic relationships of Thiomicrospira species and their identification in deep-sea hydrothermal vent samples by denaturing gradient gel electrophoresis of 16S rDNA fragments. Arch. Microbiol. 164, 165-172 (1995a).
-
(1995)
Arch. Microbiol.
, vol.164
, pp. 165-172
-
-
Muyzer, G.1
Teske, A.2
Wirsen, C.O.3
Jannasch, H.W.4
-
19
-
-
0001868071
-
Denaturing gradient gel electrophoresis of PCR-amplified 16S rDNA. A new molecular approach to analyse the genetic diversity of mixed microbial communities
-
(A. D. L. AKKERMANS, J. D. VAN ELSAS, F. J. DE BRUIJN, eds.). 2nd ed., Dordrecht, kluwer
-
MUYZER, G., HOTTENTRÄGER, S., TESKE, A., WAWER, C.: Denaturing gradient gel electrophoresis of PCR-amplified 16S rDNA. A new molecular approach to analyse the genetic diversity of mixed microbial communities, pp. 1-2. In: Molecular Microbial Ecology Manual (A. D. L. AKKERMANS, J. D. VAN ELSAS, F. J. DE BRUIJN, eds.). 2nd ed., Dordrecht, kluwer 1995b.
-
(1995)
Molecular Microbial Ecology Manual
, pp. 1-2
-
-
Muyzer, G.1
Hottenträger, S.2
Teske, A.3
Wawer, C.4
-
20
-
-
0021918737
-
Detection of single base substitutions in total genomic DNA
-
MYERS, R. M., LUMELSKY, N., LERMAN, L. S., MANIATIS, T.: Detection of single base substitutions in total genomic DNA. Nature 313, 495-498 (1985a).
-
(1985)
Nature
, vol.313
, pp. 495-498
-
-
Myers, R.M.1
Lumelsky, N.2
Lerman, L.S.3
Maniatis, T.4
-
21
-
-
0022422690
-
Modification of the melting properties of duplex DNA by attachment of a GC-rich DNA sequence as determined by denaturing gradient gel electrophoresis
-
MYERS, R. M., FISCHER, S. G., MANIATIS, T., LERMAN, L. S.: Modification of the melting properties of duplex DNA by attachment of a GC-rich DNA sequence as determined by denaturing gradient gel electrophoresis. Nucleic Acids Res. 13, 3111-3130 (1985b).
-
(1985)
Nucleic Acids Res.
, vol.13
, pp. 3111-3130
-
-
Myers, R.M.1
Fischer, S.G.2
Maniatis, T.3
Lerman, L.S.4
-
22
-
-
0022422655
-
Nearly all single base substitutions in DNA fragments joined to a GC-clamp can be detected by denaturing gradient gel electrophoresis
-
MYERS, R. M., FISCHER, S. G., LERMAN, L. S., MANIATIS, T.: Nearly all single base substitutions in DNA fragments joined to a GC-clamp can be detected by denaturing gradient gel electrophoresis. Nucleic Acids Res. 13, 3131-3146 (1985c).
-
(1985)
Nucleic Acids Res.
, vol.13
, pp. 3131-3146
-
-
Myers, R.M.1
Fischer, S.G.2
Lerman, L.S.3
Maniatis, T.4
-
23
-
-
0023476285
-
Detection and localization of single base changes by denaturing gradient gel eletrophoresis
-
MYERS, R. M., MANIATIS, T., LERMAN, L. S.: Detection and localization of single base changes by denaturing gradient gel eletrophoresis. Methods Enzymol. 155, 501-527 (1987).
-
(1987)
Methods Enzymol.
, vol.155
, pp. 501-527
-
-
Myers, R.M.1
Maniatis, T.2
Lerman, L.S.3
-
24
-
-
0029050366
-
Identification and phylogenetic analysis of toxigenic cyanobacteria by multiplex randomly amplified polymorphic DNA
-
NEILAN, B. A.: Identification and phylogenetic analysis of toxigenic cyanobacteria by multiplex randomly amplified polymorphic DNA. Appl. Environ. Microbiol. 61, 2286-2291 (1995).
-
(1995)
Appl. Environ. Microbiol.
, vol.61
, pp. 2286-2291
-
-
Neilan, B.A.1
-
25
-
-
0027375701
-
2S in photosynthetic biofilms determined by oligonucleotide probes and microelectrodes
-
2S in photosynthetic biofilms determined by oligonucleotide probes and microelectrodes. Appl. Environ. Microbiol. 59, 3840-3849 (1993).
-
(1993)
Appl. Environ. Microbiol.
, vol.59
, pp. 3840-3849
-
-
Ramsing, N.B.1
Kühl, M.2
Jørgensen, B.B.3
-
26
-
-
0029667159
-
Distribution of bacterial populations in a stratified fjord (Manager Fjord, Denmark) quantified by in situ hybridization and related to chemical gradients in the water column
-
RAMSING, N. B., FOSSING, H., FERDELMAN, T. G., ANDERSEN, F., THAMDRUP, B.: Distribution of bacterial populations in a stratified fjord (Manager Fjord, Denmark) quantified by in situ hybridization and related to chemical gradients in the water column. Appl. Environ. Microbiol. 62, 1391-1404 (1996).
-
(1996)
Appl. Environ. Microbiol.
, vol.62
, pp. 1391-1404
-
-
Ramsing, N.B.1
Fossing, H.2
Ferdelman, T.G.3
Andersen, F.4
Thamdrup, B.5
-
27
-
-
0026689211
-
16S rDNA sequence analysis of Spirochaeta thermophila: Its phylogenetic position and implications for the systematics of the order Spirocaetales
-
RAINEY, F. A., DORSCH, M., MORGAN, H. W., STACKEBRANDT, E.: 16S rDNA sequence analysis of Spirochaeta thermophila: its phylogenetic position and implications for the systematics of the order Spirocaetales. Syst. Appl. Microbiol. 15, 197-202 (1992).
-
(1992)
Syst. Appl. Microbiol.
, vol.15
, pp. 197-202
-
-
Rainey, F.A.1
Dorsch, M.2
Morgan, H.W.3
Stackebrandt, E.4
-
28
-
-
0027942092
-
Fingerprinting bacterial genomes using ribosomal RNA genes and operons
-
SCHMIDT, T. M.: Fingerprinting bacterial genomes using ribosomal RNA genes and operons. methods Mol. Cell. Biol. 5, 3-12 (1994).
-
(1994)
Methods Mol. Cell. Biol.
, vol.5
, pp. 3-12
-
-
Schmidt, T.M.1
-
29
-
-
0000023099
-
Attachment of a 40-base-pair G+C rich sequence (GC-clamp) to genomic DNA fragments by the polymerase chain reaction results in improved detection of single-base changes
-
SHEFFIELD, V. C., COX, D. R., LERMAN, L. S., MYERS, R. M.: Attachment of a 40-base-pair G+C rich sequence (GC-clamp) to genomic DNA fragments by the polymerase chain reaction results in improved detection of single-base changes. Proc. Natl. Acad. Sci. USA 86, 232-236 (1989).
-
(1989)
Proc. Natl. Acad. Sci. USA
, vol.86
, pp. 232-236
-
-
Sheffield, V.C.1
Cox, D.R.2
Lerman, L.S.3
Myers, R.M.4
-
30
-
-
0029898080
-
Anaerobic, nitrate-dependent microbial oxidation of ferrous iron
-
STRÄUB, K. L., BENZ, M., SCHINK, B., WIDDEL, F.: Anaerobic, nitrate-dependent microbial oxidation of ferrous iron. Appl. Environ. Microbiol. 62, 1458-1460 (1996).
-
(1996)
Appl. Environ. Microbiol.
, vol.62
, pp. 1458-1460
-
-
Sträub, K.L.1
Benz, M.2
Schink, B.3
Widdel, F.4
-
32
-
-
0029851898
-
Molecular Identification of bacteria from a co-culture by denaturing gradient gel electrophoresis of 16S ribosomal DNA fragments as a tool for isolation in pure cultures
-
TESKE, A., SIGALEVICH, P., COHEN, Y., MUYZER, G.: Molecular Identification of bacteria from a co-culture by denaturing gradient gel electrophoresis of 16S ribosomal DNA fragments as a tool for isolation in pure cultures. Appl. Environ. Microbiol. 62, 4210-4215 (1996).
-
(1996)
Appl. Environ. Microbiol.
, vol.62
, pp. 4210-4215
-
-
Teske, A.1
Sigalevich, P.2
Cohen, Y.3
Muyzer, G.4
-
33
-
-
0029667164
-
Distribution of sulfate-reducing bacteria in a stratified fjord (Mariager Fjord, Denmark) as evaluated by Most-Probable-Number counts and denaturing gradient gel eletrophoresis of PCR-amplified ribosomal DNA fragments
-
TESKE, A., WAWER, C., MUYZER, G., RAMSING, N. B.: Distribution of sulfate-reducing bacteria in a stratified fjord (Mariager Fjord, Denmark) as evaluated by Most-Probable-Number counts and denaturing gradient gel eletrophoresis of PCR-amplified ribosomal DNA fragments. Appl. Environ. Microbiol. 62, 1405-1415 (1996).
-
(1996)
Appl. Environ. Microbiol.
, vol.62
, pp. 1405-1415
-
-
Teske, A.1
Wawer, C.2
Muyzer, G.3
Ramsing, N.B.4
-
34
-
-
0027992990
-
Genomic fingerprinting of bacteria using repetitive sequence-based polymerase chain reaction
-
VERSALOVIC, J., SCHNEIDER, M., BRUIJN, F. J. DE, LUPSKI, J. R.: Genomic fingerprinting of bacteria using repetitive sequence-based polymerase chain reaction. Methods Mol. Cell. Biol. 5, 25-40 (1994).
-
(1994)
Methods Mol. Cell. Biol.
, vol.5
, pp. 25-40
-
-
Versalovic, J.1
Schneider, M.2
De Bruijn, F.J.3
Lupski, J.R.4
-
35
-
-
0029072874
-
Unraveling the extent of diversity within the order Planctomycetales
-
WARD, N., RAINEY, F. A., STACKEBRANDT, E., SCHLESNER, H.: Unraveling the extent of diversity within the order Planctomycetales. Appl. Environ. Microbiol. 61, 2270-2275 (1995).
-
(1995)
Appl. Environ. Microbiol.
, vol.61
, pp. 2270-2275
-
-
Ward, N.1
Rainey, F.A.2
Stackebrandt, E.3
Schlesner, H.4
-
36
-
-
0029077890
-
Genetic diversity of Desulfovibrio spp. in environmental samples analyzed by denaturing gradient gel electrophoresis of [NiFe] hydrogenase gene fragments
-
WAWER, C., MUYZER, G.: Genetic diversity of Desulfovibrio spp. in environmental samples analyzed by denaturing gradient gel electrophoresis of [NiFe] hydrogenase gene fragments. Appl. Environ. Microbiol. 61, 2203-2210 (1995).
-
(1995)
Appl. Environ. Microbiol.
, vol.61
, pp. 2203-2210
-
-
Wawer, C.1
Muyzer, G.2
-
37
-
-
0002378395
-
Prokaryote systematics: The evolution of a science
-
(A. BALOWS, H. G. TRÜPER, M. DWORKIN, W. HARDER, K. SCHLEIFER, eds.). 2nd ed., Springer-Verlag, New York
-
WOESE, C. R.: Prokaryote systematics: the evolution of a science, pp. 3-18. In: The Prokaryotes (A. BALOWS, H. G. TRÜPER, M. DWORKIN, W. HARDER, K. SCHLEIFER, eds.). Vol. 1, 2nd ed., Springer-Verlag, New York 1992.
-
(1992)
The Prokaryotes
, vol.1
, pp. 3-18
-
-
Woese, C.R.1
|