Analysis of the rumen bacterial diversity under two different diet conditions using denaturing gradient gel electrophoresis, random sequencing, and statistical ecology approaches

Anaerobe

Volumn 7, Issue 3, 2001, Pages 119-134

  Kocherginskaya, Svetlana A ^a   Aminov, Rustam I ^a   White, Bryan A ^a  

^a UNIVERSITY OF ILLINOIS AT URBANA CHAMPAIGN   (United States)

Author keywords

16S libraries; Corn diet; DGGE; Hay diet; Rumen bacteria

Indexed keywords

ARTICLE; BACTERIUM ISOLATION; CORN; DENATURING GRADIENT GEL ELECTROPHORESIS; DIETARY INTAKE; ECOLOGY; GRAM POSITIVE BACTERIUM; PHYLOGENY; PRIORITY JOURNAL; RANDOMIZATION; SEQUENCE ANALYSIS; TREPONEMA;

ANIMALIA; BACTERIA (MICROORGANISMS); OTUS; POSIBACTERIA; PROTEOBACTERIA; ZEA MAYS;

EID: 0034803204     PISSN: 10759964     EISSN: None     Source Type: Journal    
DOI: 10.1006/anae.2001.0378     Document Type: Article

References (35)

1. Bacteria, fungi and protozoa of the rumen
2. The rumen bacteria
3. Bacterial species of the rumen
4. The rumen bacteria
5. Development of, and natural fluctuation in, rumen microbial populations
6. Development of, and natural fluctuation in, rumen microbial populations
7. Phylogenetic analysis of rumen bacteria by comparative sequence analysis of cloned 16S rRNA genes
8. Rumen bacterial diversity as determined by sequence analysis of 16S rDNA libraries
9. Rumen bacterial community transition during adaptation to high-grain diet
10. Unravelling the genetic diversity of ruminal bacteria belonging to the CFB phylum
11. The effects of corn milling coproducts on growth performance and diet digestability by beef cattle
12. Rapid method for direct extraction of DNA from soil and sediments
13. Profiling of complex microbial populations by denaturing gradient gel electrophoresis analysis of polymerase chain reaction-amplified genes coding for 16S rRNA
14. Denaturing gradient gel electrophoresis of PCR-amplified 16S rDNA - A new molecular approach to analyze the genetic diversity of mixed microbial communities
15. Confidence limits on phylogeneies: An approach using the bootstrap
16. Application of network BLAST server
17. CLUSTAL W: Improving the sensitivity of progressive multiple sequence alignment through sequence weighting, positions-specific gap penalties and weight matrix choice
18. A simple model for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences
19. The neighbor-joining method: A new method for reconstructing phylogenetic trees
20. Taxonomic notice: A place for DNA-DNA reassociation and 16S rDNA sequence analysis in the present species definition in bacteriology
21. Principles and concepts pertaining to organization at the community level
22. Diversity indices
23. The population frequencies of species and the estimation of population parameters
24. Three cases of Anaerobiospirillum succiniproducens bacteremia confirmed by 16S rDNA sequencing
25. Succiniclasticum ruminis gen. nov., sp. nov., a ruminal bacterium converting succinate to propionate as the sole energy-yielding mechanism
26. Genetic diversity and phylogenetic relationships among strains of Prevotella (Bacteroides) ruminicola from the rumen
27. Phenotypic diversity among ruminal isolates of Prevotella ruminicola: Proposal of Prevotella brevis sp. nov., Prevotella bryantii sp. nov., and Prevotella albensis sp. nov. and redefinition of Prevotella ruminicola
28. Enumeration and presumptive identification of some functional groups of bacteria in the rumen of dairy cows fed grass silage-based diets
29. Interaction of ruminal bacteria in the production and utilization of maltooligosaccharides from starch
30. Effects of microbial synergism on fiber digestion in the rumen
31. Identification of proteolytic rumen bacteria isolated from New Zealand cattle
32. The proteolytic systems of ruminal microorganisms
33. Genomic plasticity of Prevotella ruminicola strains is caused by variable location of cellulase genes