RNAi Applications in Mammalian Cells

BioTechniques

Volumn 36, Issue 4, 2004, Pages 557-561

  Scherer, Lisa ^a   Rossi, John J ^a  

^a CITY OF HOPE NATIONAL MEDICAL CENTER   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

RNA; RNA POLYMERASE;

CAENORHABDITIS ELEGANS; CHRONIC MYELOID LEUKEMIA; DROSOPHILA; EPISOME; EWING SARCOMA; GENE CONTROL; GENE EXPRESSION; GENE SILENCING; HUMAN; HUMAN IMMUNODEFICIENCY VIRUS; MAMMAL CELL; NONHUMAN; PROTEIN TARGETING; REVIEW; RNA ANALYSIS; RNA INTERFERENCE; RNA REPLICATION; RNA SEQUENCE; RNA STRUCTURE; RNA TRANSCRIPTION; VIRUS REPLICATION;

CAENORHABDITIS; CAENORHABDITIS ELEGANS; HUMAN IMMUNODEFICIENCY VIRUS; MAMMALIA; RNA VIRUSES;

EID: 1842579654     PISSN: 07366205     EISSN: None     Source Type: Journal    
DOI: 10.2144/04364te01     Document Type: Review

References (34)

1. Hannon, G.J. 2002. RNA interference. Nature 418:244-251.
2. Bernstein, E., A.M. Denli, and G.J. Hannon. 2001. The rest is silence. RNA 7:1509-1521.
3. Elbashir, S.M., J. Harborth, W. Lendeckel, A. Yalcin, K. Weber, and T. Tuschl. 2001. Duplexes of 21-nucleotide RNAs mediate RNA interference in cultured mammalian cells. Nature 411:494-498.
4. Caplen, N.J., S. Parrish, F. Imani, A. Fire, and R.A. Morgan. 2001. Specific inhibition of gene expression by small double-stranded RNAs in invertebrate and vertebrate systems. Proc. Natl. Acad. Sci. USA 98:9742-9747.
5. Agrawal, N., P.V. Dasaradhi, A. Mohmmed, P. Malhotra, R.K. Bhatnagar, and S.K. Mukherjee. 2003. RNA interference: biology, mechanism, and applications. Microbiol Mol Biol. Rev. 67:657-685.
6. Paul, C.P., P.D. Good, I. Winer, and D.R. Engelke. 2002. Effective expression of small interfering RNA in human cells. Nat. Biotechnol. 20:505-508.
7. Lee, N.S., T. Dohjima, G. Bauer, H. Li, M.J. Li, A. Ehsani, P. Salvaterra, and J. Rossi. 2002. Expression of small interfering RNAs targeted against HIV-1 rev transcripts in human cells. Nat. Biotechnol. 20:500-505.
8. Khvorova, A., A. Reynolds, and S.D. Jayasena. 2003. Functional siRNAs and miRNAs exhibit strand bias. Cell 115:209-216.
9. Schwarz, D.S., G. Hutvagner, T. Du, Z. Xu, N. Aronin, and P.D. Zamore. 2003. Asymmetry in the assembly of the RNAi enzyme complex. Cell 115:199-208.
10. Xia, H., Q. Mao, H.L. Paulson, and B.L. Davidson. 2002. siRNA-mediated gene silencing in vitro and in vivo. Nat. Biotechnol. 20:1006-1010.
11. Myers, J.W., J.T. Jones, T. Meyer, and J.E. Ferrell. 2003. Recombinant Dicer efficiently converts large dsRNAs into siRNAs suitable for gene silencing. Nat. Biotechnol. 21:324-328.
12. Kawasaki, H., E. Suyama, M. Iyo, and K. Taira. 2003. siRNAs generated by recombinant human Dicer induce specific and significant but target site-independent gene silencing in human cells. Nucleic Acids Res. 31:981-987.
13. Yang, D., F. Buchholz, Z. Huang, A. Goga, C.Y. Chen, F.M. Brodsky, and J.M. Bishop. 2002. Short RNA duplexes produced by hydrolysis with Escherichia coli RNase III mediate effective RNA interference in mammalian cells. Proc. Natl. Acad. Sci. USA 99:9942-9947.
14. Wilda, M., U. Fuchs, W. Wossmann, and A. Borkhardt. 2002. Killing of leukemic cells with a BCR/ABL fusion gene by RNA interference (RNAi). Oncogene 21:5716-5724.
15. Scherr, M., K. Battmer, T. Winkler, O. Heidenreich, A. Ganser, and M. Eder. 2003. Specific inhibition of bcr-abl gene expression by small interfering RNA. Blood 101:1566-1569.
16. Dohjima, T., N.S. Lee, H. Li, T. Ohno, and J.J. Rossi. 2003. Small interfering RNAs expressed from a Pol III promoter suppress the EWS/Fli-1 transcript in an Ewing sarcoma cell line. Mol. Ther. 7:811-816.
17. Chi, J.T., H.Y. Chang, N.N. Wang, D.S. Chang, N. Dunphy, and P.O. Brown. 2003. Genomewide view of gene silencing by small interfering RNAs. Proc. Natl. Acad. Sci. USA 100:6343-6346.
18. Saxena, S., Z.O. Jonsson, and A. Dutta. 2003. Small RNAs with imperfect match to endogenous mRNA repress translation. Implications for off-target activity of small inhibitory RNA in mammalian cells. J. Biol. Chem. 278:44312-44319.
19. Jackson, A.L., S.R. Bartz, J. Schelter, S.V. Kobayashi, J. Burchard, M. Mao, B. Li, G. Cavet, and P.S. Linsley. 2003. Expression profiling reveals off-target gene regulation by RNAi. Nat. Biotechnol. 21:635-637.
20. Persengiev, S.P., X. Zhu, and M.R. Green. 2004. Nonspecific, concentration-dependent stimulation and repression of mammalian gene expression by small interfering RNAs (siRNAs). RNA 10:12-18
21. Holen, T., M. Amarzguioui, M.T. Wiiger, E. Babaie, and H. Prydz. 2002. Positional effects of short interfering RNAs targeting the human coagulation trigger Tissue Factor. Nucleic Acids Res. 30:1757-1766.
22. Yu, J.Y., S.L. DeRuiter, and D.L. Turner. 2002. RNA interference by expression of short-interfering RNAs and hairpin RNAs in mammalian cells. Proc. Natl. Acad. Sci. USA 99:6047-6052
23. Chiu, Y.L. and T.M. Rana. 2002. RNAi in human cells: basic structural and functional features of small interfering RNA. Mol. Cell 10:549-561.
24. Castanotto, D., H. Li, and J.J. Rossi. 2002. Functional siRNA expression from transfected PCR products. RNA 8:1454-1460.
25. Martinez, M.A., B. Clotet, and J.A. Este. 2002. RNA interference of HIV replication. Trends Immunol 23:559-561.
26. Kitabwalla, M. and R.M. Ruprecht. 2002. RNA interference - a new weapon against HIV and beyond. N. Engl. J. Med. 347:1364-1367.
27. Coburn, G.A. and B.R. Cullen. 2002. Potent and specific inhibition of human immunodeficiency virus type 1 replication by RNA interference. J. Virol. 76:9225-9231.
28. Surabhi, R.M. and R.B. Gaynor. 2002. RNA interference directed against viral and cellular targets inhibits human immunodeficiency Virus Type 1 replication. J. Virol. 76:12963-12973.
29. Banerjea, A., M.-J. Li, L. Remling, N.-S. Lee, J. Rossi, and R. Akkina. 2003. Potent inhibition of HIV-1 by lentiviral vector transduced siRNAs in primary human T-lymphocytes differentiated in SCID-hu mice and CD34+ progenitor cell derived macrophages. Mol. Ther. 8:62-71.
30. Tang, H., T. Peng, and F. Wong-Staal. 2002. Novel technologies for studying virus-host interaction and discovering new drug targets for HCV and HIV. Curr. Opin. Pharmacol. 2:541-547.
31. Yokota, T., N. Sakamoto, N. Enomoto, Y. Tanabe, M. Miyagishi, S. Maekawa, L. Yi, M. Kurosaki, et al. 2003 Inhibition of intracellular hepatitis C virus replication by synthetic and vector derived small interfering RNAs. EMBO Rep. 4:602-608.
32. Kapadia, S.B., A. Brideau-Andersen, and F.V. Chisari. 2003. Interference of hepatitis C virus RNA replication by short interfering RNAs. Proc Natl. Acad. Sci. USA 100:2014-2018
33. Seo, M.Y., S. Abrignani, M. Houghton, and J.H. Han. 2003. Small interfering RNA-mediated inhibition of hepatitis C virus replication in the human hepatoma cell line Huh-7. J Virol. 77:810-812.
34. Jacque, J.M., K. Triques, and M. Stevenson. 2002. Modulation of HIV-1 replication by RNA interference. Nature 418:435-438.