-
1
-
-
2042437650
-
Initial sequencing and analysis of the human genome
-
International Human Genome Sequencing Consortium
-
International Human Genome Sequencing Consortium Initial sequencing and analysis of the human genome Nature 409 2001 860 921
-
(2001)
Nature
, vol.409
, pp. 860-921
-
-
-
2
-
-
0035895505
-
The sequence of the human genome
-
J.C. Venter, M.D. Adams, E.W. Myers, P.W. Li, R.J. Mural, and G.G. Sutton The sequence of the human genome Science 291 2001 1304 1351
-
(2001)
Science
, vol.291
, pp. 1304-1351
-
-
Venter, J.C.1
Adams, M.D.2
Myers, E.W.3
Li, P.W.4
Mural, R.J.5
Sutton, G.G.6
-
3
-
-
7244245762
-
Finishing the euchromatic sequence of the human genome
-
International Human Genome Sequencing Consortium
-
International Human Genome Sequencing Consortium Finishing the euchromatic sequence of the human genome Nature 431 2004 931 945
-
(2004)
Nature
, vol.431
, pp. 931-945
-
-
-
4
-
-
2542542256
-
Ultraconserved elements in the human genome
-
G. Bejerano, M. Pheasant, I. Makunin, S. Stephen, W.J. Kent, J.S. Mattick, and D. Haussler Ultraconserved elements in the human genome Science 304 2004 1321 1325
-
(2004)
Science
, vol.304
, pp. 1321-1325
-
-
Bejerano, G.1
Pheasant, M.2
Makunin, I.3
Stephen, S.4
Kent, W.J.5
Mattick, J.S.6
Haussler, D.7
-
5
-
-
0034616398
-
Identification of a coordinate regulator of interleukins 4, 13, and 5 by cross-species sequence comparisons
-
G.G. Loots, R.M. Locksley, C.M. Blankespoor, Z.E. Wang, W. Miller, E.M. Rubin, and K.A. Frazer Identification of a coordinate regulator of interleukins 4, 13, and 5 by cross-species sequence comparisons Science 288 2000 136 140
-
(2000)
Science
, vol.288
, pp. 136-140
-
-
Loots, G.G.1
Locksley, R.M.2
Blankespoor, C.M.3
Wang, Z.E.4
Miller, W.5
Rubin, E.M.6
Frazer, K.A.7
-
6
-
-
0035261381
-
Genomic strategies to identify mammalian regulatory sequences
-
L.A. Pennacchio, and E.M. Rubin Genomic strategies to identify mammalian regulatory sequences Nature Rev. Genet. 2 2001 100 109
-
(2001)
Nature Rev. Genet.
, vol.2
, pp. 100-109
-
-
Pennacchio, L.A.1
Rubin, E.M.2
-
7
-
-
0037012881
-
Large-scale transcriptional activity in chromosomes 21 and 22
-
P. Kapranov, S.E. Cawley, J. Drenkow, S. Bekiranov, R.L. Strausberg, S.P. Fodor, and T.R. Gingeras Large-scale transcriptional activity in chromosomes 21 and 22 Science 296 2002 916 919
-
(2002)
Science
, vol.296
, pp. 916-919
-
-
Kapranov, P.1
Cawley, S.E.2
Drenkow, J.3
Bekiranov, S.4
Strausberg, R.L.5
Fodor, S.P.6
Gingeras, T.R.7
-
8
-
-
0037442493
-
The transcriptional activity of human chromosome 22
-
J.L. Rinn, G. Euskirchen, P. Bertone, R. Martone, N.M. Luscombe, and S. Hartman The transcriptional activity of human chromosome 22 Genes Dev. 17 2003 529 540
-
(2003)
Genes Dev.
, vol.17
, pp. 529-540
-
-
Rinn, J.L.1
Euskirchen, G.2
Bertone, P.3
Martone, R.4
Luscombe, N.M.5
Hartman, S.6
-
9
-
-
1942454210
-
Evidence that functional transcription units cover at least half of the human genome
-
M. Semon, and L. Duret Evidence that functional transcription units cover at least half of the human genome Trends Genet. 20 2004 229 232
-
(2004)
Trends Genet.
, vol.20
, pp. 229-232
-
-
Semon, M.1
Duret, L.2
-
10
-
-
19944376457
-
Global identification of human transcribed sequences with genome tiling arrays
-
P. Bertone, V. Stolc, T.E. Royce, J.S. Rozowsky, A.E. Urban, and X. Zhu Global identification of human transcribed sequences with genome tiling arrays Science 306 2004 2242 2246
-
(2004)
Science
, vol.306
, pp. 2242-2246
-
-
Bertone, P.1
Stolc, V.2
Royce, T.E.3
Rozowsky, J.S.4
Urban, A.E.5
Zhu, X.6
-
11
-
-
0035656688
-
Non-coding RNA genes and the modern RNA world
-
S.R. Eddy Non-coding RNA genes and the modern RNA world Nature Rev. Genet. 2 2001 919 929
-
(2001)
Nature Rev. Genet.
, vol.2
, pp. 919-929
-
-
Eddy, S.R.1
-
12
-
-
0038756128
-
Human chromosome 7: DNA sequence and biology
-
S.W. Scherer, J. Cheung, J.R. MacDonald, L.R. Osborne, K. Nakabayashi, and J.A. Herbrick Human chromosome 7: DNA sequence and biology Science 300 2003 767 772
-
(2003)
Science
, vol.300
, pp. 767-772
-
-
Scherer, S.W.1
Cheung, J.2
MacDonald, J.R.3
Osborne, L.R.4
Nakabayashi, K.5
Herbrick, J.A.6
-
13
-
-
10744226888
-
Unbiased mapping of transcription factor binding sites along human chromosomes 21 and 22 points to widespread regulation of noncoding RNAs
-
S. Cawley, S. Bekiranov, H.H. Ng, P. Kapranov, E.A. Sekinger, and D. Kampa Unbiased mapping of transcription factor binding sites along human chromosomes 21 and 22 points to widespread regulation of noncoding RNAs Cell 116 2004 499 509
-
(2004)
Cell
, vol.116
, pp. 499-509
-
-
Cawley, S.1
Bekiranov, S.2
Ng, H.H.3
Kapranov, P.4
Sekinger, E.A.5
Kampa, D.6
-
14
-
-
0022293979
-
Processed pseudogenes: Characteristics and evolution
-
E.F. Vanin Processed pseudogenes: characteristics and evolution Annu. Rev. Genet. 19 1985 253 272
-
(1985)
Annu. Rev. Genet.
, vol.19
, pp. 253-272
-
-
Vanin, E.F.1
-
16
-
-
3142594265
-
Large-scale analysis of pseudogenes in the human genome
-
Z. Zhang, and M. Gerstein Large-scale analysis of pseudogenes in the human genome Curr. Opin. Genet. Dev. 14 2004 328 335
-
(2004)
Curr. Opin. Genet. Dev.
, vol.14
, pp. 328-335
-
-
Zhang, Z.1
Gerstein, M.2
-
17
-
-
0014421064
-
Evolutionary rate at the molecular level
-
M. Kimura Evolutionary rate at the molecular level Nature 217 1968 624 626
-
(1968)
Nature
, vol.217
, pp. 624-626
-
-
Kimura, M.1
-
18
-
-
0346155809
-
Pseudogenes: Are they "junk" or functional DNA?
-
E.S. Balakirev, and F.J. Ayala Pseudogenes: are they "junk" or functional DNA? Annu. Rev. Genet. 37 2003 123 151
-
(2003)
Annu. Rev. Genet.
, vol.37
, pp. 123-151
-
-
Balakirev, E.S.1
Ayala, F.J.2
-
19
-
-
0019831076
-
The structure of eight distinct cloned human leukocyte interferon cDNAs
-
D.V. Goeddel, D.W. Leung, T.J. Dull, M. Gross, R.M. Lawn, and R. McCandliss The structure of eight distinct cloned human leukocyte interferon cDNAs Nature 290 1981 20 26
-
(1981)
Nature
, vol.290
, pp. 20-26
-
-
Goeddel, D.V.1
Leung, D.W.2
Dull, T.J.3
Gross, M.4
Lawn, R.M.5
McCandliss, R.6
-
20
-
-
0026660296
-
Identification of antisense RNA transcripts from a human DNA topoisomerase I pseudogene
-
B.S. Zhou, D.R. Beidler, and Y.C. Cheng Identification of antisense RNA transcripts from a human DNA topoisomerase I pseudogene Cancer Res. 52 1992 4280 4285
-
(1992)
Cancer Res.
, vol.52
, pp. 4280-4285
-
-
Zhou, B.S.1
Beidler, D.R.2
Cheng, Y.C.3
-
21
-
-
0038414560
-
An expressed pseudogene regulates the messenger-RNA stability of its homologous coding gene
-
S. Hirotsune, N. Yoshida, A. Chen, L. Garrett, F. Sugiyama, and S. Takahashi An expressed pseudogene regulates the messenger-RNA stability of its homologous coding gene Nature 423 2003 91 96
-
(2003)
Nature
, vol.423
, pp. 91-96
-
-
Hirotsune, S.1
Yoshida, N.2
Chen, A.3
Garrett, L.4
Sugiyama, F.5
Takahashi, S.6
-
22
-
-
0033568856
-
Neuronal expression of neural nitric oxide synthase (nNOS) protein is suppressed by an antisense RNA transcribed from an NOS pseudogene
-
S.A. Korneev, J.H. Park, and M. O'Shea Neuronal expression of neural nitric oxide synthase (nNOS) protein is suppressed by an antisense RNA transcribed from an NOS pseudogene J. Neurosci. 19 1999 7711 7720
-
(1999)
J. Neurosci.
, vol.19
, pp. 7711-7720
-
-
Korneev, S.A.1
Park, J.H.2
O'Shea, M.3
-
23
-
-
0036180936
-
Molecular fossils in the human genome: Identification and analysis of the pseudogenes in chromosomes 21 and 22
-
P.M. Harrison, H. Hegyi, S. Balasubramanian, N.M. Luscombe, P. Bertone, and N. Echols Molecular fossils in the human genome: identification and analysis of the pseudogenes in chromosomes 21 and 22 Genome Res. 12 2002 272 280
-
(2002)
Genome Res.
, vol.12
, pp. 272-280
-
-
Harrison, P.M.1
Hegyi, H.2
Balasubramanian, S.3
Luscombe, N.M.4
Bertone, P.5
Echols, N.6
-
25
-
-
1542682570
-
Whole-genome screening indicates a possible burst of formation of processed pseudogenes and Alu repeats by particular L1 subfamilies in ancestral primates
-
K. Ohshima, M. Hattori, T. Yada, T. Gojobori, Y. Sakaki, and N. Okada Whole-genome screening indicates a possible burst of formation of processed pseudogenes and Alu repeats by particular L1 subfamilies in ancestral primates Genome Biol. 4 2003 R74
-
(2003)
Genome Biol.
, vol.4
, pp. 74
-
-
Ohshima, K.1
Hattori, M.2
Yada, T.3
Gojobori, T.4
Sakaki, Y.5
Okada, N.6
-
26
-
-
0346752110
-
Millions of years of evolution preserved: A comprehensive catalog of the processed pseudogenes in the human genome
-
Z. Zhang, P.M. Harrison, Y. Liu, and M. Gerstein Millions of years of evolution preserved: a comprehensive catalog of the processed pseudogenes in the human genome Genome Res. 13 2003 2541 2558
-
(2003)
Genome Res.
, vol.13
, pp. 2541-2558
-
-
Zhang, Z.1
Harrison, P.M.2
Liu, Y.3
Gerstein, M.4
-
27
-
-
1642473033
-
Comparative analysis of processed pseudogenes in the mouse and human genomes
-
Z. Zhang, N. Carriero, and M. Gerstein Comparative analysis of processed pseudogenes in the mouse and human genomes Trends Genet. 20 2004 62 67
-
(2004)
Trends Genet.
, vol.20
, pp. 62-67
-
-
Zhang, Z.1
Carriero, N.2
Gerstein, M.3
-
28
-
-
0142027777
-
Distribution of NF-kappaB-binding sites across human chromosome 22
-
R. Martone, G. Euskirchen, P. Bertone, S. Hartman, T.E. Royce, and N.M. Luscombe Distribution of NF-kappaB-binding sites across human chromosome 22 Proc. Natl Acad. Sci. USA 100 2003 12247 12252
-
(2003)
Proc. Natl Acad. Sci. USA
, vol.100
, pp. 12247-12252
-
-
Martone, R.1
Euskirchen, G.2
Bertone, P.3
Hartman, S.4
Royce, T.E.5
Luscombe, N.M.6
-
29
-
-
11144357294
-
CREB binds to multiple loci on human chromosome 22
-
G. Euskirchen, T.E. Royce, P. Bertone, R. Martone, J.L. Rinn, and F.K. Nelson CREB binds to multiple loci on human chromosome 22 Mol. Cell. Biol. 24 2004 3804 3814
-
(2004)
Mol. Cell. Biol.
, vol.24
, pp. 3804-3814
-
-
Euskirchen, G.1
Royce, T.E.2
Bertone, P.3
Martone, R.4
Rinn, J.L.5
Nelson, F.K.6
-
30
-
-
79960655760
-
The DNA sequence of human chromosome 22
-
I. Dunham, N. Shimizu, B.A. Roe, S. Chissoe, A.R. Hunt, and J.E. Collins The DNA sequence of human chromosome 22 Nature 402 1999 489 495
-
(1999)
Nature
, vol.402
, pp. 489-495
-
-
Dunham, I.1
Shimizu, N.2
Roe, B.A.3
Chissoe, S.4
Hunt, A.R.5
Collins, J.E.6
-
31
-
-
0037272006
-
Reevaluating human gene annotation: A second-generation analysis of chromosome 22
-
J.E. Collins, M.E. Goward, C.G. Cole, L.J. Smink, E.J. Huckle, and S. Knowles Reevaluating human gene annotation: a second-generation analysis of chromosome 22 Genome Res. 13 2003 27 36
-
(2003)
Genome Res.
, vol.13
, pp. 27-36
-
-
Collins, J.E.1
Goward, M.E.2
Cole, C.G.3
Smink, L.J.4
Huckle, E.J.5
Knowles, S.6
-
32
-
-
0030801002
-
Gapped BLAST and PSI-BLAST: A new generation of protein database search programs
-
S.F. Altschul, T.L. Madden, A.A. Schaffer, J. Zhang, Z. Zhang, W. Miller, and D.J. Lipman Gapped BLAST and PSI-BLAST: a new generation of protein database search programs Nucl. Acids Res. 25 1997 3389 3402
-
(1997)
Nucl. Acids Res.
, vol.25
, pp. 3389-3402
-
-
Altschul, S.F.1
Madden, T.L.2
Schaffer, A.A.3
Zhang, J.4
Zhang, Z.5
Miller, W.6
Lipman, D.J.7
-
33
-
-
0023989064
-
Improved tools for biological sequence comparison
-
W.R. Pearson, and D.J. Lipman Improved tools for biological sequence comparison Proc. Natl Acad. Sci. USA 85 1988 2444 2448
-
(1988)
Proc. Natl Acad. Sci. USA
, vol.85
, pp. 2444-2448
-
-
Pearson, W.R.1
Lipman, D.J.2
-
34
-
-
0031573415
-
Comparison of DNA sequences with protein sequences
-
W.R. Pearson, T. Wood, Z. Zhang, and W. Miller Comparison of DNA sequences with protein sequences Genomics 46 1997 24 36
-
(1997)
Genomics
, vol.46
, pp. 24-36
-
-
Pearson, W.R.1
Wood, T.2
Zhang, Z.3
Miller, W.4
-
35
-
-
0037047628
-
Recent segmental duplications in the human genome
-
J.A. Bailey, Z. Gu, R.A. Clark, K. Reinert, R.V. Samonte, and S. Schwartz Recent segmental duplications in the human genome Science 297 2002 1003 1007
-
(2002)
Science
, vol.297
, pp. 1003-1007
-
-
Bailey, J.A.1
Gu, Z.2
Clark, R.A.3
Reinert, K.4
Samonte, R.V.5
Schwartz, S.6
-
36
-
-
0036262336
-
SNPs on human chromosomes 21 and 22-analysis in terms of protein features and pseudogenes
-
S. Balasubramanian, P. Harrison, H. Hegyi, P. Bertone, N. Luscombe, and N. Echols SNPs on human chromosomes 21 and 22-analysis in terms of protein features and pseudogenes Pharmacogenomics 3 2002 393 402
-
(2002)
Pharmacogenomics
, vol.3
, pp. 393-402
-
-
Balasubramanian, S.1
Harrison, P.2
Hegyi, H.3
Bertone, P.4
Luscombe, N.5
Echols, N.6
-
37
-
-
0019461128
-
The "cat eye syndrome": Dicentric small marker chromosome probably derived from a no.22 (tetrasomy 22pter to q11) associated with a characteristic phenotype. Report of 11 patients and delineation of the clinical picture
-
A. Schinzel, W. Schmid, M. Fraccaro, L. Tiepolo, O. Zuffardi, and J.M. Opitz The "cat eye syndrome": dicentric small marker chromosome probably derived from a no.22 (tetrasomy 22pter to q11) associated with a characteristic phenotype. Report of 11 patients and delineation of the clinical picture Hum. Genet. 57 1981 148 158
-
(1981)
Hum. Genet.
, vol.57
, pp. 148-158
-
-
Schinzel, A.1
Schmid, W.2
Fraccaro, M.3
Tiepolo, L.4
Zuffardi, O.5
Opitz, J.M.6
-
38
-
-
17944365053
-
Analysis of the cat eye syndrome critical region in humans and the region of conserved synteny in mice: A search for candidate genes at or near the human chromosome 22 pericentromere
-
T.K. Footz, P. Brinkman-Mills, G.S. Banting, S.A. Maier, M.A. Riazi, and L. Bridgland Analysis of the cat eye syndrome critical region in humans and the region of conserved synteny in mice: a search for candidate genes at or near the human chromosome 22 pericentromere Genome Res. 11 2001 1053 1070
-
(2001)
Genome Res.
, vol.11
, pp. 1053-1070
-
-
Footz, T.K.1
Brinkman-Mills, P.2
Banting, G.S.3
Maier, S.A.4
Riazi, M.A.5
Bridgland, L.6
-
39
-
-
0036314772
-
Studying genomes through the aeons: Protein families, pseudogenes and proteome evolution
-
P.M. Harrison, and M. Gerstein Studying genomes through the aeons: protein families, pseudogenes and proteome evolution J. Mol. Biol. 318 2002 1155 1174
-
(2002)
J. Mol. Biol.
, vol.318
, pp. 1155-1174
-
-
Harrison, P.M.1
Gerstein, M.2
-
40
-
-
3843143954
-
A new role for expressed pseudogenes as ncRNA: Regulation of mRNA stability of its homologous coding gene
-
Y. Yano, R. Saito, N. Yoshida, A. Yoshiki, A. Wynshaw-Boris, M. Tomita, and S. Hirotsune A new role for expressed pseudogenes as ncRNA: regulation of mRNA stability of its homologous coding gene J. Mol. Med. 82 2004 414 422
-
(2004)
J. Mol. Med.
, vol.82
, pp. 414-422
-
-
Yano, Y.1
Saito, R.2
Yoshida, N.3
Yoshiki, A.4
Wynshaw-Boris, A.5
Tomita, M.6
Hirotsune, S.7
-
41
-
-
18444402182
-
The Ensembl genome database project
-
T. Hubbard, D. Barker, E. Birney, G. Cameron, Y. Chen, and L. Clark The Ensembl genome database project Nucl. Acids Res. 30 2002 38 41
-
(2002)
Nucl. Acids Res.
, vol.30
, pp. 38-41
-
-
Hubbard, T.1
Barker, D.2
Birney, E.3
Cameron, G.4
Chen, Y.5
Clark, L.6
-
42
-
-
2442706422
-
An overview of Ensembl
-
E. Birney, T.D. Andrews, P. Bevan, M. Caccamo, Y. Chen, and L. Clarke An overview of Ensembl Genome Res. 14 2004 925 928
-
(2004)
Genome Res.
, vol.14
, pp. 925-928
-
-
Birney, E.1
Andrews, T.D.2
Bevan, P.3
Caccamo, M.4
Chen, Y.5
Clarke, L.6
-
43
-
-
0030683599
-
PAML: A program package for phylogenetic analysis by maximum likelihood
-
Z. Yang PAML: a program package for phylogenetic analysis by maximum likelihood Comput. Appl. Biosci. 13 1997 555 556
-
(1997)
Comput. Appl. Biosci.
, vol.13
, pp. 555-556
-
-
Yang, Z.1
-
44
-
-
0033979433
-
Estimating synonymous and nonsynonymous substitution rates under realistic evolutionary models
-
Z. Yang, and R. Nielsen Estimating synonymous and nonsynonymous substitution rates under realistic evolutionary models Mol. Biol. Evol. 17 2000 32 43
-
(2000)
Mol. Biol. Evol.
, vol.17
, pp. 32-43
-
-
Yang, Z.1
Nielsen, R.2
-
45
-
-
17744363430
-
First pass annotation of promoters on human chromosome 22
-
M. Scherf, A. Klingenhoff, K. Frech, K. Quandt, R. Schneider, and K. Grote First pass annotation of promoters on human chromosome 22 Genome Res. 11 2001 333 340
-
(2001)
Genome Res.
, vol.11
, pp. 333-340
-
-
Scherf, M.1
Klingenhoff, A.2
Frech, K.3
Quandt, K.4
Schneider, R.5
Grote, K.6
-
46
-
-
0347755531
-
The UCSC Table Browser data retrieval tool
-
D. Karolchik, A.S. Hinrichs, T.S. Furey, K.M. Roskin, C.W. Sugnet, D. Haussler, and W.J. Kent The UCSC Table Browser data retrieval tool Nucl. Acids Res. 32 2004 D493 D496
-
(2004)
Nucl. Acids Res.
, vol.32
-
-
Karolchik, D.1
Hinrichs, A.S.2
Furey, T.S.3
Roskin, K.M.4
Sugnet, C.W.5
Haussler, D.6
Kent, W.J.7
|