-
1
-
-
0032728166
-
Hunting with traps: Genome-wide strategies for gene discovery and functional analysis
-
Durick, K., Mendlein, J. & Xanthopoulos, K. G. Hunting with traps: genome-wide strategies for gene discovery and functional analysis. Genome Res. 9, 1019-1025 (1999).
-
(1999)
Genome Res.
, vol.9
, pp. 1019-1025
-
-
Durick, K.1
Mendlein, J.2
Xanthopoulos, K.G.3
-
2
-
-
0030606535
-
Trapping of mammalian promoters by Cre-lox site-specific recombination
-
Fukushige, S. & Ikeda, J. E. Trapping of mammalian promoters by Cre-lox site-specific recombination. DNA Res. 3, 73-80 (1996).
-
(1996)
DNA Res.
, vol.3
, pp. 73-80
-
-
Fukushige, S.1
Ikeda, J.E.2
-
3
-
-
0028284554
-
Selection of DNA clones with enhancer sequences
-
Asoh, S., Lee-Kwon, W., Mouradian, M. M. & Nirenberg, M. Selection of DNA clones with enhancer sequences. Proc. Natl Acad. Sci. USA 91, 6982-6986 (1994).
-
(1994)
Proc. Natl Acad. Sci. USA
, vol.91
, pp. 6982-6986
-
-
Asoh, S.1
Lee-Kwon, W.2
Mouradian, M.M.3
Nirenberg, M.4
-
4
-
-
0030927867
-
Searching for regulatory elements in human noncoding sequences
-
Duret, L. & Bucher, P. Searching for regulatory elements in human noncoding sequences. Curr. Opin. Struct. Biol. 7, 399-406 (1997).
-
(1997)
Curr. Opin. Struct. Biol.
, vol.7
, pp. 399-406
-
-
Duret, L.1
Bucher, P.2
-
5
-
-
0030722935
-
Long human-mouse sequence alignments reveal novel regulatory elements: A reason to sequence the mouse genome
-
Hardison, R. C., Oeltjen, J. & Miller, W. Long human-mouse sequence alignments reveal novel regulatory elements: a reason to sequence the mouse genome. Genome Res. 7, 959-966 (1997).
-
(1997)
Genome Res.
, vol.7
, pp. 959-966
-
-
Hardison, R.C.1
Oeltjen, J.2
Miller, W.3
-
6
-
-
0034284481
-
Conserved noncoding sequences are reliable guides to regulatory elements
-
Hardison, R. C. Conserved noncoding sequences are reliable guides to regulatory elements. Trends Genet. 16, 369-372 (2000). An excellent review of comparative sequence analyses, limitations and successes.
-
(2000)
Trends Genet.
, vol.16
, pp. 369-372
-
-
Hardison, R.C.1
-
7
-
-
0034616398
-
Identification of a coordinate regulator of interleukins 4, 13, and 5 by cross-species sequence comparisons
-
Loots, G. G. et al. Identification of a coordinate regulator of interleukins 4, 13, and 5 by cross-species sequence comparisons. Science 288, 136-140 (2000).
-
(2000)
Science
, vol.288
, pp. 136-140
-
-
Loots, G.G.1
-
8
-
-
0033972132
-
Analysis of vertebrate SCL loci identifies conserved enhancers
-
Gottgens, B. et al. Analysis of vertebrate SCL loci identifies conserved enhancers. Nature Biotechnol. 18, 181-186 (2000). References 7 and 8 are early examples of the use of human-mouse comparative sequence analyses for assigning priority to regions of DNA to screen for functional properties.
-
(2000)
Nature Biotechnol.
, vol.18
, pp. 181-186
-
-
Gottgens, B.1
-
9
-
-
0032561246
-
The transcriptional program of sporulation in budding yeast
-
erratum 82, 1421 (1998)
-
Chu, S. et al. The transcriptional program of sporulation in budding yeast. Science 282, 699-705 (1998); erratum 82, 1421 (1998)
-
(1998)
Science
, vol.282
, pp. 699-705
-
-
Chu, S.1
-
10
-
-
0031742022
-
Comprehensive identification of cell cycle-regulated genes of the yeast Saccharomyces cerevisiae by microarray hybridization
-
Spellman, R. T. et al. Comprehensive identification of cell cycle-regulated genes of the yeast Saccharomyces cerevisiae by microarray hybridization. Mol. Biol. Cell 9, 3273-3297 (1998).
-
(1998)
Mol. Biol. Cell
, vol.9
, pp. 3273-3297
-
-
Spellman, R.T.1
-
11
-
-
0033028596
-
Systematic determination of genetic network architecture
-
Tavazoie, S., Hughes, J. D., Campbell, M. J., Cho, R. J. & Church, G. M. Systematic determination of genetic network architecture. Nature Genet. 22, 281-285 (1999). References 9, 10 and 11 provide excellent examples of yeast microarray data and how they can be used to cluster pathway-related genes on the basis of similar expression patterns.
-
(1999)
Nature Genet.
, vol.22
, pp. 281-285
-
-
Tavazoie, S.1
Hughes, J.D.2
Campbell, M.J.3
Cho, R.J.4
Church, G.M.5
-
12
-
-
0033643183
-
Cluster, function and promoter: Analysis of yeast expression array
-
Zhu, J. & Zhang, M. Q. Cluster, function and promoter: analysis of yeast expression array. Pac. Symp. Biocomput. 479-490 (2000).
-
(2000)
Pac. Symp. Biocomput.
, pp. 479-490
-
-
Zhu, J.1
Zhang, M.Q.2
-
13
-
-
0032562789
-
Identification of regulatory regions which confer muscle-specific gene expression
-
Wasserman, W. W. & Fickett, J. W. Identification of regulatory regions which confer muscle-specific gene expression. J. Mol. Biol. 278, 167-181 (1998).
-
(1998)
J. Mol. Biol.
, vol.278
, pp. 167-181
-
-
Wasserman, W.W.1
Fickett, J.W.2
-
14
-
-
0033518256
-
Synexpression groups in eukaryotes
-
Niehrs, C. & Pollet, N. Synexpression groups in eukaryotes. Nature 402, 483-487 (1999).
-
(1999)
Nature
, vol.402
, pp. 483-487
-
-
Niehrs, C.1
Pollet, N.2
-
15
-
-
0034659898
-
Genomics, gene expression and DNA arrays
-
Lockhart, D. J. & Winzeler, E. A. Genomics, gene expression and DNA arrays. Nature 405, 827-836 (2000). A significant review of the numerous applications of using DNA arrays to understand biological processes.
-
(2000)
Nature
, vol.405
, pp. 827-836
-
-
Lockhart, D.J.1
Winzeler, E.A.2
-
16
-
-
0034628901
-
Computational identification of cis-regulatory elements associated with groups of functionally related genes in Saccharomyces cerevisiae
-
Hughes, J. D., Estep, P. W., Tavazoie, S. & Church, G. M. Computational identification of cis-regulatory elements associated with groups of functionally related genes in Saccharomyces cerevisiae. J. Mol. Biol. 296, 1205-1214 (2000).
-
(2000)
J. Mol. Biol.
, vol.296
, pp. 1205-1214
-
-
Hughes, J.D.1
Estep, P.W.2
Tavazoie, S.3
Church, G.M.4
-
17
-
-
0033563516
-
Promoter analysis of co-regulated genes in the yeast genome
-
Zhang, M. Q. Promoter analysis of co-regulated genes in the yeast genome. Comput. Chem. 23, 233-250 (1999).
-
(1999)
Comput. Chem.
, vol.23
, pp. 233-250
-
-
Zhang, M.Q.1
-
18
-
-
0026508808
-
Compilation of vertebrate-encoded transcription factors
-
Faisst, S. & Meyer, S. Compilation of vertebrate-encoded transcription factors. Nucleic Acids Res. 20, 3-26 (1992).
-
(1992)
Nucleic Acids Res.
, vol.20
, pp. 3-26
-
-
Faisst, S.1
Meyer, S.2
-
19
-
-
0027286405
-
Computer-assisted prediction, classification, and delimitation of protein binding sites in nucleic acids
-
Frech, K., Hermann, G. & Werner, T. Computer-assisted prediction, classification, and delimitation of protein binding sites in nucleic acids. Nucleic Acids Res. 21, 1655-1664 (1993).
-
(1993)
Nucleic Acids Res.
, vol.21
, pp. 1655-1664
-
-
Frech, K.1
Hermann, G.2
Werner, T.3
-
20
-
-
0033978588
-
Object-oriented transcription factors database (ooTFD)
-
Ghosh, D. Object-oriented transcription factors database (ooTFD). Nucleic Acids Res. 28, 308-310 (2000).
-
(2000)
Nucleic Acids Res.
, vol.28
, pp. 308-310
-
-
Ghosh, D.1
-
21
-
-
0031860393
-
Databases on transcriptional regulation: TRANSFAC, TRRD and COMPEL
-
Heinemeyer, T. et al. Databases on transcriptional regulation: TRANSFAC, TRRD and COMPEL. Nucleic Acids Res. 26, 362-367 (1998).
-
(1998)
Nucleic Acids Res.
, vol.26
, pp. 362-367
-
-
Heinemeyer, T.1
-
22
-
-
0033954325
-
COMPEL: A database on composite regulatory elements providing combinatorial transcriptional regulation
-
Kel-Margoulis, O. V., Romashchenko, A. G., Kolchanov, N. A., Wingender, E. & Kel, A. E. COMPEL: a database on composite regulatory elements providing combinatorial transcriptional regulation. Nucleic Acids Res. 28, 311-315 (2000).
-
(2000)
Nucleic Acids Res.
, vol.28
, pp. 311-315
-
-
Kel-Margoulis, O.V.1
Romashchenko, A.G.2
Kolchanov, N.A.3
Wingender, E.4
Kel, A.E.5
-
23
-
-
0032945593
-
DIALIGN 2: Improvement of the segment-to-segment approach to multiple sequence alignment
-
Morgenstern, B. DIALIGN 2: improvement of the segment-to-segment approach to multiple sequence alignment. Bioinformatics 15, 211-218 (1999).
-
(1999)
Bioinformatics
, vol.15
, pp. 211-218
-
-
Morgenstern, B.1
-
24
-
-
0030013909
-
SIGNAL SCAN 4.0: Additional databases and sequence formats
-
Prestridge, D. S. SIGNAL SCAN 4.0: additional databases and sequence formats. Comput. Appl. Biosci. 12, 157-160 (1996).
-
(1996)
Comput. Appl. Biosci.
, vol.12
, pp. 157-160
-
-
Prestridge, D.S.1
-
25
-
-
0033988994
-
Computer software for eukaryotic promoter analysis
-
Prestridge, D. S. Computer software for eukaryotic promoter analysis. Methods Mol. Biol. 130, 265-295 (2000).
-
(2000)
Methods Mol. Biol.
, vol.130
, pp. 265-295
-
-
Prestridge, D.S.1
-
26
-
-
0343776188
-
The eukaryotic promoter database (EPD)
-
Perier, R. C., Praz, V., Junier, T., Bonnard, C. S. Bucher, P. The eukaryotic promoter database (EPD). Nucleic Acids Res. 28, 302-303 (2000).
-
(2000)
Nucleic Acids Res.
, vol.28
, pp. 302-303
-
-
Perier, R.C.1
Praz, V.2
Junier, T.3
Bonnard, C.S.4
Bucher, P.5
-
27
-
-
0028971143
-
MatInd and MatInspector: New fast and versatile tools for detection of consensus matches in nucleotide sequence data
-
Quandt, K., Frech, K., Karas, H., Wingender, E. & Werner, T. MatInd and MatInspector: new fast and versatile tools for detection of consensus matches in nucleotide sequence data. Nucleic Acids Res. 23, 4878-4884 (1995).
-
(1995)
Nucleic Acids Res.
, vol.23
, pp. 4878-4884
-
-
Quandt, K.1
Frech, K.2
Karas, H.3
Wingender, E.4
Werner, T.5
-
28
-
-
0033976586
-
TRANSFAC: An integrated system for gene expression regulation
-
Wingender, E. et al. TRANSFAC: an integrated system for gene expression regulation. Nucleic Acids Res. 28, 316-319 (2000).
-
(2000)
Nucleic Acids Res.
, vol.28
, pp. 316-319
-
-
Wingender, E.1
-
29
-
-
0033990056
-
Computer-assisted analysis of transcription control regions. Matinspector and other programs
-
Werner, T. Computer-assisted analysis of transcription control regions. Matinspector and other programs. Methods Mol. Biol. 132, 337-349 (2000).
-
(2000)
Methods Mol. Biol.
, vol.132
, pp. 337-349
-
-
Werner, T.1
-
30
-
-
0033215140
-
Locus control regions: Coming of age at a decade plus
-
Li, Q., Harju, S. & Peterson, K. R. Locus control regions: coming of age at a decade plus. Trends Genet. 15, 403-408 (1999). A detailed summary of our current understanding of the β-globin locus control region.
-
(1999)
Trends Genet.
, vol.15
, pp. 403-408
-
-
Li, Q.1
Harju, S.2
Peterson, K.R.3
-
31
-
-
0034194034
-
Faithful expression of the human 5q31 cytokine cluster in transgenic mice
-
Lacy, D. A. et al. Faithful expression of the human 5q31 cytokine cluster in transgenic mice. J. Immunol. 164, 4569-4574 (2000).
-
(2000)
J. Immunol.
, vol.164
, pp. 4569-4574
-
-
Lacy, D.A.1
-
32
-
-
0028920057
-
The apolipoprotein(a) gene is regulated by sex hormones and acute-phase inducers in YAC transgenic mice
-
Frazer, K. A., Narla, G., Zhang, J. L. & Rubin, E. M. The apolipoprotein(a) gene is regulated by sex hormones and acute-phase inducers in YAC transgenic mice. Nature Genet. 9, 424-431 (1995). A transgenic study supporting the commonality of gene regulation between species.
-
(1995)
Nature Genet.
, vol.9
, pp. 424-431
-
-
Frazer, K.A.1
Narla, G.2
Zhang, J.L.3
Rubin, E.M.4
-
33
-
-
0026441126
-
The mouse β-globin locus control region: Hypersensitive sites 3 and 4
-
Jimenez, G., Gale, K. B. & Enver, T. The mouse β-globin locus control region: hypersensitive sites 3 and 4. Nucleic Acids Res. 20, 5797-5803 (1992).
-
(1992)
Nucleic Acids Res.
, vol.20
, pp. 5797-5803
-
-
Jimenez, G.1
Gale, K.B.2
Enver, T.3
-
34
-
-
0029113706
-
Human and mouse T-cell receptor loci: Genomics, evolution, diversity, and serendipity
-
Hood, L., Rowen, L. & Koop, B. F. Human and mouse T-cell receptor loci: genomics, evolution, diversity, and serendipity. Ann. NY Acad. Sci. 758, 390-412 (1995).
-
(1995)
Ann. NY Acad. Sci.
, vol.758
, pp. 390-412
-
-
Hood, L.1
Rowen, L.2
Koop, B.F.3
-
35
-
-
0027963488
-
Striking sequence similarity over almost 100 kilobases of human and mouse T-cell receptor DNA
-
Koop, B. F. & Hood, L. Striking sequence similarity over almost 100 kilobases of human and mouse T-cell receptor DNA. Nature Genet. 7, 48-53 (1994). An example of a large genomic region in human and mouse that is highly conserved, thus limiting regulatory sequence identification.
-
(1994)
Nature Genet.
, vol.7
, pp. 48-53
-
-
Koop, B.F.1
Hood, L.2
-
36
-
-
0033865416
-
Gene regulation and deregulation: A β-globin perspective
-
Ho, P. J. & Thein, S. L. Gene regulation and deregulation: a β-globin perspective. Blood Rev. 14, 78-93 (2000).
-
(2000)
Blood Rev.
, vol.14
, pp. 78-93
-
-
Ho, P.J.1
Thein, S.L.2
-
37
-
-
0024506821
-
A dominant control region from the human β-globin locus conferring integration site-independent gene expression
-
Talbot, D. et al. A dominant control region from the human β-globin locus conferring integration site-independent gene expression. Nature 338, 352-355 (1989).
-
(1989)
Nature
, vol.338
, pp. 352-355
-
-
Talbot, D.1
-
38
-
-
0033799618
-
Active conservation of noncoding sequences revealed by three-way species comparisons
-
Dubchak, I. et al. Active conservation of noncoding sequences revealed by three-way species comparisons. Genome Res. 10, 1304-1306 (2000).
-
(2000)
Genome Res.
, vol.10
, pp. 1304-1306
-
-
Dubchak, I.1
-
39
-
-
0026410520
-
Sequence and comparative analysis of the rabbit α-like globin gene cluster reveals a rapid mode of evolution in a G+C-rich region of mammalian genomes
-
Hardison, R. et al. Sequence and comparative analysis of the rabbit α-like globin gene cluster reveals a rapid mode of evolution in a G+C-rich region of mammalian genomes. J. Mol. Biol. 222, 233-249 (1991).
-
(1991)
J. Mol. Biol.
, vol.222
, pp. 233-249
-
-
Hardison, R.1
-
40
-
-
0033028741
-
Quantifying DNA-protein interactions by double-stranded DNA arrays
-
Bulyk, M. L. Gentalen, E., Lockhart, D. J. & Church, G. M. Quantifying DNA-protein interactions by double-stranded DNA arrays. Nature Biotechnol. 17, 573-577 (1999).
-
(1999)
Nature Biotechnol.
, vol.17
, pp. 573-577
-
-
Bulyk, M.L.1
Gentalen, E.2
Lockhart, D.J.3
Church, G.M.4
-
41
-
-
0023664018
-
Comparison of the consensus sequence flanking translational start sites in Drosophila and vertebrates
-
Cavener, D. R. Comparison of the consensus sequence flanking translational start sites in Drosophila and vertebrates. Nucleic Acids Res. 15, 1353-1361 (1987).
-
(1987)
Nucleic Acids Res.
, vol.15
, pp. 1353-1361
-
-
Cavener, D.R.1
-
42
-
-
0032776529
-
Models for prediction and recognition of eukaryotic promoters
-
Werner, T. Models for prediction and recognition of eukaryotic promoters. Mamm. Genome 10, 168-175 (1999).
-
(1999)
Mamm. Genome
, vol.10
, pp. 168-175
-
-
Werner, T.1
-
43
-
-
0030847502
-
A computational genomics approach to the identification of gene networks
-
Wagner, A. A computational genomics approach to the identification of gene networks. Nucleic Acids Res. 25, 3594-3604 (1997).
-
(1997)
Nucleic Acids Res.
, vol.25
, pp. 3594-3604
-
-
Wagner, A.1
-
44
-
-
0032483307
-
Extracting regulatory sites from the upstream region of yeast genes by computational analysis of oligonucleotide frequencies
-
van Helden, J., Andre, B. & Collado-Vides, J. Extracting regulatory sites from the upstream region of yeast genes by computational analysis of oligonucleotide frequencies. J. Mol. Biol. 281, 827-842 (1998).
-
(1998)
J. Mol. Biol.
, vol.281
, pp. 827-842
-
-
Van Helden, J.1
Andre, B.2
Collado-Vides, J.3
-
45
-
-
0033394535
-
Genes regulated cooperatively by one or more transcription factors and their identification in whole eukaryotic genomes
-
Wagner, A. Genes regulated cooperatively by one or more transcription factors and their identification in whole eukaryotic genomes. Bioinformatics 15, 776-784 (1999).
-
(1999)
Bioinformatics
, vol.15
, pp. 776-784
-
-
Wagner, A.1
-
46
-
-
0023821768
-
Embryonic ε- and γ-globin genes of a prosimian primate (Galago crassicaudatus). Nucleotide and amino acid sequences, developmental regulation and phylogenetic footprints
-
Tagle, D. A. et al. Embryonic ε- and γ-globin genes of a prosimian primate (Galago crassicaudatus). Nucleotide and amino acid sequences, developmental regulation and phylogenetic footprints. J. Mol. Biol. 203, 439-455 (1988).
-
(1988)
J. Mol. Biol.
, vol.203
, pp. 439-455
-
-
Tagle, D.A.1
-
47
-
-
0030714035
-
Cross-species characterization of the promoter region of the cystic fibrosis transmembrane conductance regulator gene reveals multiple levels of regulation
-
Vuillaumier, S. et al. Cross-species characterization of the promoter region of the cystic fibrosis transmembrane conductance regulator gene reveals multiple levels of regulation. Biochem J. 327, 651-562 (1997).
-
(1997)
Biochem J.
, vol.327
, pp. 651-1562
-
-
Vuillaumier, S.1
-
48
-
-
0030076323
-
Evolutionary strategies for the elucidation of cis- and trans-factors that regulate the developmental switching programs of the β-like globin genes
-
Gumucio, D. L. et al. Evolutionary strategies for the elucidation of cis- and trans-factors that regulate the developmental switching programs of the β-like globin genes. Mol. Phylogenet. Evol. 5, 18-32 (1996). References 46 and 48 illustrate the power of comparative genomic analyses through phylogenetic footprints of globin genes.
-
(1996)
Mol. Phylogenet. Evol.
, vol.5
, pp. 18-32
-
-
Gumucio, D.L.1
-
49
-
-
0027141519
-
Number of CpG islands and genes in human and mouse
-
Antequera, F. & Bird, A. Number of CpG islands and genes in human and mouse. Proc. Natl Acad. Sci. USA 90, 11995-11999 (1993).
-
(1993)
Proc. Natl Acad. Sci. USA
, vol.90
, pp. 11995-11999
-
-
Antequera, F.1
Bird, A.2
-
50
-
-
0033562779
-
Isolation of CpG islands from large genomic clones
-
Cross, S. H., Clark, V. H. & Bird, A. P. Isolation of CpG islands from large genomic clones. Nucleic Acids Res. 27, 2093-2107 (1999).
-
(1999)
Nucleic Acids Res.
, vol.27
, pp. 2093-2107
-
-
Cross, S.H.1
Clark, V.H.2
Bird, A.P.3
-
51
-
-
0027981741
-
Identification of genes within CpG-enriched DNA from human chromosome 4p16.3
-
John, R. M., Robbins, C. A. & Myers, R. M. Identification of genes within CpG-enriched DNA from human chromosome 4p16.3. Hum. Mol. Genet. 3, 1611-1616 (1994).
-
(1994)
Hum. Mol. Genet.
, vol.3
, pp. 1611-1616
-
-
John, R.M.1
Robbins, C.A.2
Myers, R.M.3
-
52
-
-
0031973265
-
Isolation of estrogen-responsive genes with a CpG island library
-
Watanabe, T. et al. Isolation of estrogen-responsive genes with a CpG island library. Mol. Cell. Biol. 18, 442-449 (1998).
-
(1998)
Mol. Cell. Biol.
, vol.18
, pp. 442-449
-
-
Watanabe, T.1
-
53
-
-
44049115577
-
Choice of enzymes for mapping based on CpG islands in the human genome. Genet
-
Larsen, F., Gundersen, G. & Prydz, H. Choice of enzymes for mapping based on CpG islands in the human genome. Genet. Anal. Tech. Appl. 9, 80-85 (1992).
-
(1992)
Anal. Tech. Appl.
, vol.9
, pp. 80-85
-
-
Larsen, F.1
Gundersen, G.2
Prydz, H.3
-
54
-
-
0032582377
-
Quick identification and localization of CpG islands in large genomic fragments by partial digestion with Hpall and Hhal
-
Kato, R. & Sasaki, H. Quick identification and localization of CpG islands in large genomic fragments by partial digestion with Hpall and Hhal. DNA Res. 5, 287-295 (1998).
-
(1998)
DNA Res.
, vol.5
, pp. 287-295
-
-
Kato, R.1
Sasaki, H.2
-
55
-
-
79960655760
-
The DNA sequence of human chromosome 22
-
erratum 404, 904 (2000)
-
Dunham, I. et al. The DNA sequence of human chromosome 22. Nature 402, 489-495 (1999); erratum 404, 904 (2000).
-
(1999)
Nature
, vol.402
, pp. 489-495
-
-
Dunham, I.1
-
56
-
-
0033822364
-
Large-scale human promoter mapping using CpG islands
-
Ioshikhes, I. P. & Zhang, M. Q. Large-scale human promoter mapping using CpG islands. Nature Genet. 26, 61-63 (2000).
-
(2000)
Nature Genet.
, vol.26
, pp. 61-63
-
-
Ioshikhes, I.P.1
Zhang, M.Q.2
-
57
-
-
0033150947
-
Regulatory elements and expression profiles
-
Bucher, P. Regulatory elements and expression profiles. Curr. Opin. Struct. Biol. 9, 400-407 (1999).
-
(1999)
Curr. Opin. Struct. Biol.
, vol.9
, pp. 400-407
-
-
Bucher, P.1
-
58
-
-
0033862512
-
Applications of DNA microarrays to the transcriptional analysis of mammalian genomes
-
Greenfield, A. Applications of DNA microarrays to the transcriptional analysis of mammalian genomes. Mamm. Genome 11, 609-613 (2000).
-
(2000)
Mamm. Genome
, vol.11
, pp. 609-613
-
-
Greenfield, A.1
-
59
-
-
0034721722
-
Genomic analysis of gene expression in C. elegans
-
Hill, A. A., Hunter, C. P., Tsung, B. T., Tucker-Kellogg, G. & Brown, E. L. Genomic analysis of gene expression in C. elegans. Science 290, 809-812 (2000).
-
(2000)
Science
, vol.290
, pp. 809-812
-
-
Hill, A.A.1
Hunter, C.P.2
Tsung, B.T.3
Tucker-Kellogg, G.4
Brown, E.L.5
-
60
-
-
0033775978
-
Human-mouse genome comparisons to locate regulatory sites
-
Wasserman, W. W., Palumbo, M., Thompson, W., Fickett, J. W. & Lawrence, C. E. Human-mouse genome comparisons to locate regulatory sites. Nature Genet. 26, 225-228 (2000).
-
(2000)
Nature Genet.
, vol.26
, pp. 225-228
-
-
Wasserman, W.W.1
Palumbo, M.2
Thompson, W.3
Fickett, J.W.4
Lawrence, C.E.5
-
61
-
-
0016669094
-
Evolution at two levels in humans and chimpanzees
-
King, M. C. & Wilson, A. C. Evolution at two levels in humans and chimpanzees. Science 188, 107-116 (1975). A landmark paper highlighting the large amount of sequence conservation between humans and chimpanzees, indicating that regulatory differences might account for the varying phenotypes between the two species.
-
(1975)
Science
, vol.188
, pp. 107-116
-
-
King, M.C.1
Wilson, A.C.2
-
62
-
-
0034673781
-
In search of the whales' sisters
-
Luo, Z. In search of the whales' sisters. Nature 404, 235-237 (2000).
-
(2000)
Nature
, vol.404
, pp. 235-237
-
-
Luo, Z.1
-
63
-
-
0033937019
-
The mitochondrial genome of the sperm whale and a new molecular reference for estimating eutherian divergence dates
-
Arnason, U., Gullberg, A., Gretarsdottir, S., Ursing, B. & Janke, A. The mitochondrial genome of the sperm whale and a new molecular reference for estimating eutherian divergence dates. J. Mol. Evol. 50, 569-578 (2000).
-
(2000)
J. Mol. Evol.
, vol.50
, pp. 569-578
-
-
Arnason, U.1
Gullberg, A.2
Gretarsdottir, S.3
Ursing, B.4
Janke, A.5
-
64
-
-
0032495098
-
Analyses of mitochondrial genomes strongly support a hippopotamus-whale clade
-
Ursing, B. M. & Arnason, U. Analyses of mitochondrial genomes strongly support a hippopotamus-whale clade. Proc. R. Soc. Lond. B 265, 2251-2255 (1998).
-
(1998)
Proc. R. Soc. Lond. B
, vol.265
, pp. 2251-2255
-
-
Ursing, B.M.1
Arnason, U.2
-
65
-
-
0030794201
-
Molecular evidence from retroposons that whales form a clade within even-toed ungulates
-
Shimamura, M. et al. Molecular evidence from retroposons that whales form a clade within even-toed ungulates. Nature 388, 666-670 (1997).
-
(1997)
Nature
, vol.388
, pp. 666-670
-
-
Shimamura, M.1
-
66
-
-
0033621101
-
Phylogenetic relationships among cetartiodactyls based on insertions of short and long interpersed elements: Hippopotamuses are the closest extant relatives of whales
-
Nikaido, M., Rooney, A. P. & Okada, N. Phylogenetic relationships among cetartiodactyls based on insertions of short and long interpersed elements: hippopotamuses are the closest extant relatives of whales. Proc. Natl Acad. Sci. USA 96, 10261-10266 (1999).
-
(1999)
Proc. Natl Acad. Sci. USA
, vol.96
, pp. 10261-10266
-
-
Nikaido, M.1
Rooney, A.P.2
Okada, N.3
-
67
-
-
0032479079
-
Going the distance: A current view of enhancer action
-
Blackwood, E. M. & Kadonaga, J. T. Going the distance: a current view of enhancer action. Science 281, 61-63 (1998).
-
(1998)
Science
, vol.281
, pp. 61-63
-
-
Blackwood, E.M.1
Kadonaga, J.T.2
-
68
-
-
0031861637
-
Locus control regions, chromatin activation and transcription
-
Fraser, P. & Grosveld, F. Locus control regions, chromatin activation and transcription. Curr. Opin. Cell Biol. 10, 361-365 (1998).
-
(1998)
Curr. Opin. Cell Biol.
, vol.10
, pp. 361-365
-
-
Fraser, P.1
Grosveld, F.2
-
69
-
-
0032928813
-
Activation by locus control regions?
-
Grosveld, F. Activation by locus control regions? Curr. Opin. Genet. Dev. 9, 152-157 (1999).
-
(1999)
Curr. Opin. Genet. Dev.
, vol.9
, pp. 152-157
-
-
Grosveld, F.1
-
70
-
-
0033118880
-
Stopped at the border: Boundaries and insulators
-
Bell, A. C. & Felsenfeld, G. Stopped at the border: boundaries and insulators. Curr. Opin. Genet. Dev. 9, 191-198 (1999).
-
(1999)
Curr. Opin. Genet. Dev.
, vol.9
, pp. 191-198
-
-
Bell, A.C.1
Felsenfeld, G.2
-
71
-
-
0030922269
-
The role of insulator elements in defining domains of gene expression
-
Geyer, P. K. The role of insulator elements in defining domains of gene expression. Curr. Opin. Genet. Dev. 7, 242-248 (1997).
-
(1997)
Curr. Opin. Genet. Dev.
, vol.7
, pp. 242-248
-
-
Geyer, P.K.1
-
72
-
-
0032055491
-
Transcriptional control and the role of silencers in transcriptional regulation in eukaryotes
-
Ogbourne, S. & Antalis, T. M. Transcriptional control and the role of silencers in transcriptional regulation in eukaryotes. Biochem J. 331, 1-14 (1998).
-
(1998)
Biochem J.
, vol.331
, pp. 1-14
-
-
Ogbourne, S.1
Antalis, T.M.2
-
73
-
-
0032191345
-
Facilitation of chromatin dynamics by SARs
-
Hart, C. M. & Laemmli, U. K. Facilitation of chromatin dynamics by SARs. Curr. Opin. Genet. Dev. 8, 519-525 (1998).
-
(1998)
Curr. Opin. Genet. Dev.
, vol.8
, pp. 519-525
-
-
Hart, C.M.1
Laemmli, U.K.2
-
74
-
-
0025183708
-
Basic local alignment search tool
-
Altschul, S. F., Gish, W., Miller, W., Myers, E. W. & Lipman, D. J. Basic local alignment search tool. J. Mol. Biol. 215, 403-410 (1990).
-
(1990)
J. Mol. Biol.
, vol.215
, pp. 403-410
-
-
Altschul, S.F.1
Gish, W.2
Miller, W.3
Myers, E.W.4
Lipman, D.J.5
-
75
-
-
0033861549
-
Human and mouse gene structure: Comparative analysis and application to exon prediction
-
Batzoglou, S., Pachter, L., Mesirov, J. P., Berger, B. & Lander, E. S. Human and mouse gene structure: comparative analysis and application to exon prediction. Genome Res. 10, 950-958 (2000).
-
(2000)
Genome Res.
, vol.10
, pp. 950-958
-
-
Batzoglou, S.1
Pachter, L.2
Mesirov, J.P.3
Berger, B.4
Lander, E.S.5
-
76
-
-
0033153375
-
Alignment of whole genomes
-
Delcher, A. L. et al. Alignment of whole genomes. Nucleic Acids Res. 27, 2369-2376 (1999).
-
(1999)
Nucleic Acids Res.
, vol.27
, pp. 2369-2376
-
-
Delcher, A.L.1
-
77
-
-
85142191877
-
VISTA: Visualizing global DNA sequence alignments of arbitrary length
-
in the press
-
Mayor, C. et al. VISTA: Visualizing global DNA sequence alignments of arbitrary length. Bioinformatics (in the press).
-
Bioinformatics
-
-
Mayor, C.1
-
78
-
-
0034020416
-
PipMaker - A web server for aligning two genomic DNA sequences
-
Schwartz, S. et al. PipMaker - a web server for aligning two genomic DNA sequences. Genome Res. 10, 577-586 (2000).
-
(2000)
Genome Res.
, vol.10
, pp. 577-586
-
-
Schwartz, S.1
|