GAMOLA: A new local solution for sequence annotation and analyzing draft and finished prokaryotic genomes

OMICS A Journal of Integrative Biology

Volumn 7, Issue 2, 2003, Pages 161-169

  Altermann, Eric ^a   Klaenhammer, Todd R ^a  

^a NORTH CAROLINA STATE UNIVERSITY   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

BACTERIAL PROTEIN;

ALGORITHM; AMINO ACID SEQUENCE; ARTICLE; AUTOANALYSIS; BACTERIAL GENOME; BIOLOGY; COMPUTER ANALYSIS; COMPUTER INTERFACE; COMPUTER PROGRAM; DATA BASE; GENE LIBRARY; GENE SEQUENCE; GENETIC DATABASE; GENETICS; GENOME ANALYSIS; GENOMICS; INFORMATION PROCESSING; INFORMATION RETRIEVAL; INTERNET; METHODOLOGY; NONHUMAN; OPEN READING FRAME; PHYSIOLOGY; PRIORITY JOURNAL; SEQUENCE ALIGNMENT; SEQUENCE HOMOLOGY;

BACTERIA (MICROORGANISMS); PROKARYOTA;

EID: 0038636966     PISSN: 15362310     EISSN: None     Source Type: Journal    
DOI: 10.1089/153623103322246557     Document Type: Article

References (6)

1. ALTSCHUL, S.F., MADDEN, T.L., SCHAFFER, A.A., et al. (1997). Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Res 25, 3389-3402.
2. DELCHER, A.L., HARMON, D., KASIF, S., et al. (1999). Improved microbial gene identification with GLIMMER. Nucleic Acids Res 27, 4636-4641.
3. EDDY, S.R. (1998). Profile hidden Markov models. Bioinformatics 14, 755-763.
4. ROZEN, S., and SKALETSKY, H. (2000). Primer3 on the WWW for general users and for biologist programmers. Methods Mol Biol 132, 365-386.
5. SALZBERG, S.L., DELCHER, A.L., KASIF, S., et al. (1998). Microbial gene identification using interpolated Markov models. Nucleic Acids Res 26, 544-548.
6. SCHAFFER, A.A., ARAVIND, L., MADDEN, T.L., et al. (2001). Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements. Nucleic Acids Res 29, 2994-3005.