A novel type of conserved DNA-binding domain in the transcriptional regulators of the AlgR/AgrA/LytR family

Nucleic Acids Research

Volumn 30, Issue 11, 2002, Pages 2453-2459

  Nikolskaya, Anastasia N ^a   Galperin, Michael Y ^a  

^a NATIONAL INSTITUTES OF HEALTH   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

ALGINIC ACID; BACTERIAL POLYSACCHARIDE; BACTERIAL TOXIN; BACTERIOCIN; DNA BINDING PROTEIN; VIRULENCE FACTOR;

AMINO ACID SEQUENCE; ARTICLE; AUTOLYSIS; BACILLUS SUBTILIS; BACTERIAL GENOME; CARBOHYDRATE SYNTHESIS; CLOSTRIDIUM PERFRINGENS; CONTROLLED STUDY; CYSTIC FIBROSIS; CYTOLYSIS; FIMBRIA; GENETIC CONSERVATION; NONHUMAN; NUCLEOTIDE SEQUENCE; PATHOGENESIS; PRIORITY JOURNAL; PROTEIN DNA BINDING; PROTEIN DOMAIN; PROTEIN EXPRESSION; PROTEIN FAMILY; PROTEIN SYNTHESIS; PSEUDOMONAS AERUGINOSA; SENSOR; SEQUENCE ANALYSIS; SIGNAL TRANSDUCTION; STAPHYLOCOCCUS AUREUS; TRANSCRIPTION REGULATION;

AGRA; BACILLUS SUBTILIS; BACTERIA (MICROORGANISMS); CLOSTRIDIUM; CLOSTRIDIUM PERFRINGENS; NEGIBACTERIA; POSIBACTERIA; PSEUDOMONAS; PSEUDOMONAS AERUGINOSA; STAPHYLOCOCCUS; STAPHYLOCOCCUS AUREUS;

EID: 0036606155     PISSN: 03051048     EISSN: None     Source Type: Journal    
DOI: 10.1093/nar/30.11.2453     Document Type: Article

References (36)

1. The histidine protein kinase superfamily
2. Two-component signal transduction
3. Histidine kinases and response regulator proteins in two-component signaling systems
4. Phosphorylation-induced signal propagation in the response regulator NtrC
5. Dimer formation and transcription activation in the sporulation response regulator Spo0A
6. Structure of the Escherichia coli response regulator NarL
7. Arac/XylS family of transcriptional regulators
8. Structural relationships in the OmpR family of winged-helix transcription factors
9. Regulation of competence for genetic transformation in Streptococcus pneumoniae by an auto-induced peptide pheromone and a two-component regulatory system
10. Characterization of the locus responsible for the bacteriocin production in Lactobacillus plantarum C11
11. Compilation of all genes encoding two-component phosphotransfer signal transducers in the genome of Escherichia coli
12. Novel domains of the prokaryotic two-component signal transduction system
13. Domain organization and molecular characterization of 13 two-component systems identified by genome sequencing of Streptococcus pneumoniae
14. Microarray-based identification of a novel Streptococcus pneumoniae regulon controlled by an autoinduced peptide
15. AlgR, a response regulator controlling mucoidy in Pseudomonas aeruginosa, binds to the FUS sites of the algD promoter located unusually far upstream from the mRNA start site
16. AlgR-binding sites within the algD promoter make up a set of inverted repeats separated by a large intervening segment of DNA
17. Identification of the DNA-binding sites for two response regulators involved in control of bacteriocin synthesis in Lactobacillus plantarum C11
18. Functional analysis of promoters involved in quorum sensing-based regulation of bacteriocin production in Lactobacillus
19. Identification of DNA binding sites for ComE, a key regulator of natural competence in Streptococcus pneumoniae
20. The VirR response regulator from Clostridium perfringens binds independently to two imperfect direct repeats located upstream of the pfoA promoter
21. Prediction of transcription regulatory sites in Archaea by a comparative genomic approach
22. Software for analysis of bacterial genomes
23. Synergistic hemolytic activity of Staphylococcus lugdunensis is mediated by three peptides encoded by a non-agr genetic locus
24. Sequence analysis, characterization and CO-specific transcription of the cox gene cluster on the megaplasmid pHCG3 of Oligotropha carboxidovorans
25. MHYT, a new integral membrane sensor domain
26. Novel genes involved in the regulation of pathogenicity factor production within the rpf gene cluster of Xanthomonas campestris
27. Identification of LytSR-regulated genes from Staphylococcus aureus
28. The virR gene, a member of a class of two-component response regulators, regulates the production of perfringolysin O, collagenase and hemagglutinin in Clostridium perfringens
29. Identification and molecular characterization of a putative regulatory locus that affects autolysis in Staphylococcus aureus
30. The alginate regulator AlgR and an associated sensor FimS are required for twitching motility in Pseudomonas aeruginosa
31. Conversion of a beta-strand to an alpha-helix induced by a single-site mutation observed in the crystal structure of Fis mutant Pro26A1a
32. Nucleotide sequence and functions of mrk determinants necessary for expression of type 3 fimbriae in Klebsiella pneumoniae
33. Prediction of protein secondary structure at better than 70% accuracy
34. Evaluation of protein multiple alignments by SAM-T99 using the BAliBASE multiple alignment test set
35. Sequence logos: A new way to display consensus sequences
36. PAS domains: Internal sensors of oxygen, redox potential and light