메뉴 건너뛰기




Volumn 59, Issue 5, 2004, Pages 609-619

The origin of eukaryotes is suggested as the symbiosis of pyrococcus into γ-proteobacteria by phylogenetic tree based on gene content

Author keywords

Eukaryote; Gene content; Nucleus symbiosis; Origin; Phylogenetic tree

Indexed keywords

RIBOSOME RNA;

EID: 16444372420     PISSN: 00222844     EISSN: None     Source Type: Journal    
DOI: 10.1007/s00239-004-2652-5     Document Type: Article
Times cited : (36)

References (102)
  • 10
    • 0031470387 scopus 로고    scopus 로고
    • Archaea and the prokaryote-to-eukaryote transition
    • Brown JR, Doolittle WF (1997) Archaea and the prokaryote-to-eukaryote transition. Microbiol Mol Biol Rev 61:456-502
    • (1997) Microbiol Mol Biol Rev , vol.61 , pp. 456-502
    • Brown, J.R.1    Doolittle, W.F.2
  • 17
    • 0032404453 scopus 로고    scopus 로고
    • You are what you eat: A gene transfer ratchet could account for bacterial genes in eukaryotic nuclear genomes
    • Doolittle WF (1998) You are what you eat: A gene transfer ratchet could account for bacterial genes in eukaryotic nuclear genomes. Trends Genet 14:307-311
    • (1998) Trends Genet , vol.14 , pp. 307-311
    • Doolittle, W.F.1
  • 18
    • 0033603539 scopus 로고    scopus 로고
    • Phylogenetic classification and the universal tree
    • Doolittle WF (1999) Phylogenetic classification and the universal tree. Science 284:2124-2129
    • (1999) Science , vol.284 , pp. 2124-2129
    • Doolittle, W.F.1
  • 19
    • 0034080049 scopus 로고    scopus 로고
    • Searching for the common ancestor
    • Doolittle RF (2000) Searching for the common ancestor. Res Microbiol 151:85-89
    • (2000) Res Microbiol , vol.151 , pp. 85-89
    • Doolittle, R.F.1
  • 20
    • 0042027896 scopus 로고    scopus 로고
    • Structural dynamics of eukaryotic chromosome evolution
    • Eichler EE, Sankoff D (2003) Structural dynamics of eukaryotic chromosome evolution. Science 301:793-797
    • (2003) Science , vol.301 , pp. 793-797
    • Eichler, E.E.1    Sankoff, D.2
  • 22
    • 0030696044 scopus 로고    scopus 로고
    • Determining divergence times with a protein clock: Update and reevaluation
    • Feng DF, Cho G, Doolittle RF (1997) Determining divergence times with a protein clock: update and reevaluation. Proc Natl Acad Sci USA 25:13028-13033
    • (1997) Proc Natl Acad Sci USA , vol.25 , pp. 13028-13033
    • Feng, D.F.1    Cho, G.2    Doolittle, R.F.3
  • 23
    • 0034178257 scopus 로고    scopus 로고
    • Homology a personal view on some of the problems
    • Fitch WM (2000) Homology a personal view on some of the problems. Trends Genet 16:227-231
    • (2000) Trends Genet , vol.16 , pp. 227-231
    • Fitch, W.M.1
  • 24
    • 0033231209 scopus 로고    scopus 로고
    • Whole genome-based phylogenetic analysis of free-living microorganisms
    • Fitz-Gibbon ST, House CH (1999) Whole genome-based phylogenetic analysis of free-living microorganisms. Nucleic Acids Res 27:4218-4222
    • (1999) Nucleic Acids Res , vol.27 , pp. 4218-4222
    • Fitz-Gibbon, S.T.1    House, C.H.2
  • 32
    • 0028888465 scopus 로고
    • Protein-based phylogenies support a chimeric origin for the eukaryotic genome
    • Golding GB, Gupta RS (1995) Protein-based phylogenies support a chimeric origin for the eukaryotic genome. Mol Biol Evol 12:1-6
    • (1995) Mol Biol Evol , vol.12 , pp. 1-6
    • Golding, G.B.1    Gupta, R.S.2
  • 33
    • 0031794743 scopus 로고    scopus 로고
    • Protein phylogenies and signature sequences: A reappraisal of evolutionary relationships among archaebacteria, eubacteria, and eukaryotes
    • Gupta RS (1998) Protein phylogenies and signature sequences: A reappraisal of evolutionary relationships among archaebacteria, eubacteria, and eukaryotes. Microbiol Mol Biol Rev 62:1435-1491
    • (1998) Microbiol Mol Biol Rev , vol.62 , pp. 1435-1491
    • Gupta, R.S.1
  • 34
    • 0028344493 scopus 로고
    • Cloning of Giardia lamblia heat shock protein HSP70 homologs: Implications regarding origin of eukaryotic cells and of endoplasmic reticulum
    • Gupta RS, Aitken K, Falah M, Singh B (1994) Cloning of Giardia lamblia heat shock protein HSP70 homologs: implications regarding origin of eukaryotic cells and of endoplasmic reticulum. Proc Natl Acad Sci USA 91:2895-2899
    • (1994) Proc Natl Acad Sci USA , vol.91 , pp. 2895-2899
    • Gupta, R.S.1    Aitken, K.2    Falah, M.3    Singh, B.4
  • 36
    • 0037022287 scopus 로고    scopus 로고
    • The origin of the eukaryotic cell: A genomic investigation
    • Hartman H, Fedorov A (2002) The origin of the eukaryotic cell: A genomic investigation. Proc Natl Acad Sci USA 99:1420-1425
    • (2002) Proc Natl Acad Sci USA , vol.99 , pp. 1420-1425
    • Hartman, H.1    Fedorov, A.2
  • 39
    • 0035150726 scopus 로고    scopus 로고
    • Origin of eukaryotic cell nuclei by symbiosis of Archaea in Bacteria is revealed by homology-hit analysis
    • Horiike T, Hamada K, Kanaya S, Shinozawa T (2001) Origin of eukaryotic cell nuclei by symbiosis of Archaea in Bacteria is revealed by homology-hit analysis. Nat Cell Biol 3:210-214
    • (2001) Nat Cell Biol , vol.3 , pp. 210-214
    • Horiike, T.1    Hamada, K.2    Kanaya, S.3    Shinozawa, T.4
  • 40
    • 0036814957 scopus 로고    scopus 로고
    • Origin of eukaryotic cell nuclei by symbiosis of Archaea in Bacteria supported by the newly clarified origin of functional genes
    • Horiike T, Hamada K, Shinozawa T (2002) Origin of eukaryotic cell nuclei by symbiosis of Archaea in Bacteria supported by the newly clarified origin of functional genes. Genes Genet Syst 77:369-76
    • (2002) Genes Genet Syst , vol.77 , pp. 369-376
    • Horiike, T.1    Hamada, K.2    Shinozawa, T.3
  • 41
    • 0036218557 scopus 로고    scopus 로고
    • Using homolog groups to create a whole-genomic tree of free-living organisms: An update
    • House CH, Fitz-Gibbon ST (2002) Using homolog groups to create a whole-genomic tree of free-living organisms: An update. J Mol Evol 54:539-547
    • (2002) J Mol Evol , vol.54 , pp. 539-547
    • House, C.H.1    Fitz-Gibbon, S.T.2
  • 42
    • 0038781925 scopus 로고    scopus 로고
    • Parallel evolution by gene duplication in the genomes of two unicellular fungi
    • Hughes AL, Friedman R (2003) Parallel evolution by gene duplication in the genomes of two unicellular fungi. Genome Res 13:1259-1264
    • (2003) Genome Res , vol.13 , pp. 1259-1264
    • Hughes, A.L.1    Friedman, R.2
  • 43
    • 0024358140 scopus 로고
    • Evolutionary relationship of archaebacteria, eubacteria, and eukaryotes inferred from phylogenetic trees of duplicated genes
    • Iwabe N, Kuma K, Hasegawa M, Osawa S, Miyata T (1989) Evolutionary relationship of archaebacteria, eubacteria, and eukaryotes inferred from phylogenetic trees of duplicated genes. Proc Natl Acad Sci USA 86:9355-9359
    • (1989) Proc Natl Acad Sci USA , vol.86 , pp. 9355-9359
    • Iwabe, N.1    Kuma, K.2    Hasegawa, M.3    Osawa, S.4    Miyata, T.5
  • 44
    • 0033616714 scopus 로고    scopus 로고
    • Horizontal gene transfer among genomes: The complexity hypothesis
    • Jain R, Rivera MC, Lake JA (1999) Horizontal gene transfer among genomes: the complexity hypothesis. Proc Natl Acad Sci USA 96:3801-3806
    • (1999) Proc Natl Acad Sci USA , vol.96 , pp. 3801-3806
    • Jain, R.1    Rivera, M.C.2    Lake, J.A.3
  • 53
    • 0027139172 scopus 로고
    • Lateral transfer in natural populations of eukaryotes
    • Kidwell MG (1993) Lateral transfer in natural populations of eukaryotes. Annu Rev Genet 27:235-256
    • (1993) Annu Rev Genet , vol.27 , pp. 235-256
    • Kidwell, M.G.1
  • 57
    • 0024285855 scopus 로고
    • Origin of the eukaryotic nucleus determined by rate-invariant analysis of rRNA sequences
    • Lake JA (1988) Origin of the eukaryotic nucleus determined by rate-invariant analysis of rRNA sequences. Nature 331:184-186
    • (1988) Nature , vol.331 , pp. 184-186
    • Lake, J.A.1
  • 58
    • 0028203243 scopus 로고
    • Was the nucleus the first endosymbiont?
    • Lake JA, Rivera MC (1994) Was the nucleus the first endosymbiont? Proc Natl Acad Sci USA 91:2880-2881
    • (1994) Proc Natl Acad Sci USA , vol.91 , pp. 2880-2881
    • Lake, J.A.1    Rivera, M.C.2
  • 59
    • 0030034839 scopus 로고    scopus 로고
    • Filamentous sulfide-oxidizing bacteria at hydrocarbon seeps of the Gulf of Mexico
    • Larkin JM, Henk MC (1996) Filamentous sulfide-oxidizing bacteria at hydrocarbon seeps of the Gulf of Mexico. Microsci Res Tech 33:23-31
    • (1996) Microsci Res Tech , vol.33 , pp. 23-31
    • Larkin, J.M.1    Henk, M.C.2
  • 60
    • 0141519279 scopus 로고    scopus 로고
    • OrthoMCL: Identification of ortholog groups for eukaryotic genomes
    • Li L, Stoeckert CJ Jr, Roos DS (2003) OrthoMCL: Identification of ortholog groups for eukaryotic genomes. Genome Res 13:2178-2189
    • (2003) Genome Res , vol.13 , pp. 2178-2189
    • Li, L.1    Stoeckert Jr., C.J.2    Roos, D.S.3
  • 61
    • 0345299175 scopus 로고    scopus 로고
    • Metabolic symbiosis at the origin of eukaryotes
    • Lopez-Garcia P, Moreira D (1999) Metabolic symbiosis at the origin of eukaryotes. Trends Biochem Sci 24:88-93
    • (1999) Trends Biochem Sci , vol.24 , pp. 88-93
    • Lopez-Garcia, P.1    Moreira, D.2
  • 62
    • 2642689666 scopus 로고    scopus 로고
    • The hydrogen hypothesis for the first eukaryote
    • Martin W, Muller M (1998) The hydrogen hypothesis for the first eukaryote. Nature 392:37-41
    • (1998) Nature , vol.392 , pp. 37-41
    • Martin, W.1    Muller, M.2
  • 65
    • 0031735879 scopus 로고    scopus 로고
    • Symbiosis between methanogenic archaea and delta-proteobacteria as the origin of eukaryotes: The syntrophic hypothesis
    • Moreira D, Lopez-Garcia P (1998) Symbiosis between methanogenic archaea and delta-proteobacteria as the origin of eukaryotes: The syntrophic hypothesis. J Mol Evol 47:517-530
    • (1998) J Mol Evol , vol.47 , pp. 517-530
    • Moreira, D.1    Lopez-Garcia, P.2
  • 75
    • 0023989064 scopus 로고
    • Improved tools for biological sequence comparison
    • Pearson WR, Lipman DJ (1988) Improved tools for biological sequence comparison. Proc Natl Acad Sci USA 85:2444-2448
    • (1988) Proc Natl Acad Sci USA , vol.85 , pp. 2444-2448
    • Pearson, W.R.1    Lipman, D.J.2
  • 76
    • 0035861990 scopus 로고    scopus 로고
    • Automatic clustering of orthologs and in-paralogs from pairwise species comparisons
    • Remm M, Storm CE, Sonnhammer EL (2001) Automatic clustering of orthologs and in-paralogs from pairwise species comparisons. J Mol Biol 314:1041-1052
    • (2001) J Mol Biol , vol.314 , pp. 1041-1052
    • Remm, M.1    Storm, C.E.2    Sonnhammer, E.L.3
  • 77
    • 0031828312 scopus 로고    scopus 로고
    • The mosaic nature of the eukaryotic nucleus
    • Ribeiro S, Golding GB (1998) The mosaic nature of the eukaryotic nucleus. Mol Biol Evol 15:779-788
    • (1998) Mol Biol Evol , vol.15 , pp. 779-788
    • Ribeiro, S.1    Golding, G.B.2
  • 80
    • 0023375195 scopus 로고
    • The neighbor-joining method: A new method for reconstructing phylogenetic trees
    • Saitou N, Nei M (1987) The neighbor-joining method: A new method for reconstructing phylogenetic trees. Mol Biol Evol 4:406-425
    • (1987) Mol Biol Evol , vol.4 , pp. 406-425
    • Saitou, N.1    Nei, M.2
  • 88
    • 0032900532 scopus 로고    scopus 로고
    • Genome phylogeny based on gene content
    • Snel B, Bork P, Huynen MA (1999) Genome phylogeny based on gene content. Nat Genet 21:108-110
    • (1999) Nat Genet , vol.21 , pp. 108-110
    • Snel, B.1    Bork, P.2    Huynen, M.A.3
  • 91
    • 0037106449 scopus 로고    scopus 로고
    • Genome sequence of Oceanobacillus iheyensis isolated from the Iheya Ridge and its unexpected adaptive capabilities to extreme environments
    • Takami H, Takaki Y, Uchiyama I (2002) Genome sequence of Oceanobacillus iheyensis isolated from the Iheya Ridge and its unexpected adaptive capabilities to extreme environments. Nucleic Acids Res 30:3927-3935
    • (2002) Nucleic Acids Res , vol.30 , pp. 3927-3935
    • Takami, H.1    Takaki, Y.2    Uchiyama, I.3
  • 94
    • 0032509302 scopus 로고    scopus 로고
    • Genome sequence of the nematode C. elegans: A platform for investigating biology
    • The C. elegans Sequencing Consortium (1998) Genome sequence of the nematode C. elegans: A platform for investigating biology. Science 282:2012-2018
    • (1998) Science , vol.282 , pp. 2012-2018
  • 96
    • 0033533089 scopus 로고    scopus 로고
    • The origin of eukaryotes: The difference between prokaryotic and eukaryotic cells
    • Vellai T, Vida G (1999) The origin of eukaryotes: The difference between prokaryotic and eukaryotic cells. Proc R Soc Lond B Biol Sci 266:1571-1577
    • (1999) Proc R Soc Lond B Biol Sci , vol.266 , pp. 1571-1577
    • Vellai, T.1    Vida, G.2
  • 99
    • 0034682457 scopus 로고    scopus 로고
    • Interpreting the universal phylogenetic tree
    • Woese CR (2000) Interpreting the universal phylogenetic tree. Proc Natl Acad Sci USA 97:8392-8396
    • (2000) Proc Natl Acad Sci USA , vol.97 , pp. 8392-8396
    • Woese, C.R.1
  • 102
    • 0001673027 scopus 로고
    • Jackknife, bootstrap and other resampling methods in regression analysis
    • Wu CFJ (1986) Jackknife, bootstrap and other resampling methods in regression analysis. Ann Stat 14:1261-1295
    • (1986) Ann Stat , vol.14 , pp. 1261-1295
    • Wu, C.F.J.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.