SCOPUS 정보 검색 플랫폼

Methods in Enzymology

Volumn 380, Issue , 2004, Pages 350-379

Cooperativity Principles in Protein Folding

(3) Chan, Hue Sun a Shimizu, Seishi a Kaya, Hüseyin a

a UNIVERSITY OF TORONTO (Canada)

Author keywords

[No Author keywords available]

Indexed keywords

ARTICLE; ENERGY; ENZYME KINETICS; HYDROPHOBICITY; MODEL; PRIORITY JOURNAL; PROTEIN BINDING; PROTEIN CONFORMATION; PROTEIN DENATURATION; PROTEIN FOLDING; PROTEIN STRUCTURE; STRUCTURE ANALYSIS; THERMODYNAMICS;

EID: 1542319916 PISSN: 00766879 EISSN: None Source Type: Book Series
DOI: 10.1016/S0076-6879(04)80016-8 Document Type: Article

Times cited : (172)

References (73)

1
- 0026345750
- S. E. Jackson and A. R. Fersht, Biochemistry 30, 10428 (1991).
- (1991) Biochemistry , vol.30 , pp. 10428
- Jackson, S.E.¹ Fersht, A.R.²

2
- 0034604105
- D. Baker, Nature 405, 39 (2000).
- (2000) Nature , vol.405 , pp. 39
- Baker, D.¹

3
- 0026756702
- E. Freire and K. P. Murphy, Adv. Protein Chem. 43, 313 (1992).
- (1992) Adv. Protein Chem. , vol.43 , pp. 313
- Freire, E.¹ Murphy, K.P.²

4
- 0002134029
- (T. Jiang, Y. Xu, and M. Q. Zhang, eds.). MIT Press, Cambridge, MA
- H. S. Chan, H. Kaya, and S. Shimizu, in "Current Topics in Computational Molecular Biology" (T. Jiang, Y. Xu, and M. Q. Zhang, eds.), p. 403. MIT Press, Cambridge, MA, 2002.
- (2002) Current Topics in Computational Molecular Biology , pp. 403
- Chan, H.S.¹ Kaya, H.² Shimizu, S.³

5
- 0032559928
- H. S. Chan, Nature 392, 761 (1998).
- (1998) Nature , vol.392 , pp. 761
- Chan, H.S.¹

6
- 0003751509
- Freeman, New York
- C. R. Cantor and P. R. Schimmel, "Biophysical Chemistry," Part III. Freeman, New York, 1980.
- (1980) "Biophysical Chemistry," Part III
- Cantor, C.R.¹ Schimmel, P.R.²

7
- 1542313540
- G. K. Ackers, J. M. Holt, and A. L. Klinger, Biochemistry 39, 117 (2000).
- (2000) Biochemistry , vol.39 , pp. 117
- Ackers, G.K.¹ Holt, J.M.² Klinger, A.L.³

8
- 0031022887
- K. A. Dill, J. Biol. Chem. 272, 701 (1997).
- (1997) J. Biol. Chem. , vol.272 , pp. 701
- Dill, K.A.¹

9
- 0035880742
- S. Shimizu and H. S. Chan, J. Chem. Phys. 115, 3424 (2001).
- (2001) J. Chem. Phys. , vol.115 , pp. 3424
- Shimizu, S.¹ Chan, H.S.²

10
- 0031454652
- J. Tsai, M. Gerstein, and M. Levitt, Protein Sci. 6, 2606 (1997).
- (1997) Protein Sci. , vol.6 , pp. 2606
- Tsai, J.¹ Gerstein, M.² Levitt, M.³

11
- 0029653906
- H. S. Chan, S. Bromberg, and K. A. Dill, Phil. Trans. Roy. Soc. London B 348, 61 (1995).
- (1995) Phil. Trans. Roy. Soc. London B , vol.348 , pp. 61
- Chan, H.S.¹ Bromberg, S.² Dill, K.A.³

12
- 0034284366
- H. S. Chan, Proteins Struct. Funct. Genet. 40, 543 (2000).
- (2000) Proteins Struct. Funct. Genet. , vol.40 , pp. 543
- Chan, H.S.¹

13
- 0034284060
- Erratum: 43, 523 (2001)
- H. Kaya and H. S. Chan, Proteins Struct. Funct. Genet. 40, 637 (2000) [Erratum: 43, 523 (2001)].
- (2000) Proteins Struct. Funct. Genet. , vol.40 , pp. 637
- Kaya, H.¹ Chan, H.S.²

14
- 0034310589
- H. Kaya and H. S. Chan, Phys. Rev. Lett. 85, 4823 (2000).
- (2000) Phys. Rev. Lett. , vol.85 , pp. 4823
- Kaya, H.¹ Chan, H.S.²

15
- 0037343134
- P. Pokarowski, A. Kolinski, and J. Skolnick, Biophys. J. 84, 1518 (2003).
- (2003) Biophys. J. , vol.84 , pp. 1518
- Pokarowski, P.¹ Kolinski, A.² Skolnick, J.³

16
- 0034272188
- Erratum: 116, 8638 (2002)
- S. Shimizu and H. S. Chan, J. Chem. Phys. 113, 4683 (2000) [Erratum: 116, 8638 (2002)].
- (2000) J. Chem. Phys. , vol.113 , pp. 4683
- Shimizu, S.¹ Chan, H.S.²

17
- 0035819985
- S. Shimizu and H. S. Chan, J. Am. Chem. Soc. 123, 2083 (2001).
- (2001) J. Am. Chem. Soc. , vol.123 , pp. 2083
- Shimizu, S.¹ Chan, H.S.²

18
- 0035878954
- S. Shimizu and H. S. Chan, J. Chem. Phys. 115, 1414 (2001).
- (2001) J. Chem. Phys. , vol.115 , pp. 1414
- Shimizu, S.¹ Chan, H.S.²

19
- 0036643497
- Erratum: 49, 294 (2002)
- S. Shimizu and H. S. Chan, Proteins Struct. Funct. Genet. 48, 15 (2002) [Erratum: 49, 294 (2002)].
- (2002) Proteins Struct. Funct. Genet. , vol.48 , pp. 15
- Shimizu, S.¹ Chan, H.S.²

20
- 0036891682
- S. Shimizu and H. S. Chan, Proteins Struct. Funct. Genet. 49, 560 (2002).
- (2002) Proteins Struct. Funct. Genet. , vol.49 , pp. 560
- Shimizu, S.¹ Chan, H.S.²

21
- 0032554078
- A. Wallqvist, D. G. Covell, and D. Thirumalai, J. Am. Chem. Soc. 120, 427 (1998).
- (1998) J. Am. Chem. Soc. , vol.120 , pp. 427
- Wallqvist, A.¹ Covell, D.G.² Thirumalai, D.³

22
- 0035977650
- M. Ikeguchi, S. Nakamura, and K. Shimizu, J. Am. Chem. Soc. 123, 677 (2001).
- (2001) J. Am. Chem. Soc. , vol.123 , pp. 677
- Ikeguchi, M.¹ Nakamura, S.² Shimizu, K.³

23
- 0037448501
- T. Ghosh, A. E. García, and S. Garde, J. Phys. Chem. B 107, 612 (2003).
- (2003) J. Phys. Chem. B , vol.107 , pp. 612
- Ghosh, T.¹ García, A.E.² Garde, S.³

24
- 0013943915
- R. Lumry, R. Biltonen, and J. F. Brandts, Biopolymers 4, 917 (1966).
- (1966) Biopolymers , vol.4 , pp. 917
- Lumry, R.¹ Biltonen, R.² Brandts, J.F.³

25
- 0029147930
- G. I. Makhatadze and P. L. Privalov, Adv. Protein Chem. 47, 307 (1995).
- (1995) Adv. Protein Chem. , vol.47 , pp. 307
- Makhatadze, G.I.¹ Privalov, P.L.²

26
- 0036304480
- H. Kaya and H. S. Chan, J. Mol. Biol. 315, 899 (2002).
- (2002) J. Mol. Biol. , vol.315 , pp. 899
- Kaya, H.¹ Chan, H.S.²

27
- 0031563812
- D. Yang, Y. K. Mok, J. D. Forman-Kay, N. A. Farrow, and L. E. Kay, J. Mol. Biol. 272, 790 (1997).
- (1997) J. Mol. Biol. , vol.272 , pp. 790
- Yang, D.¹ Mok, Y.K.² Forman-Kay, J.D.³ Farrow, N.A.⁴ Kay, L.E.⁵

28
- 0030612609
- S. W. Englander, L. Mayne, Y. Bai, and T. R. Sosnick, Protein Sci. 6, 1101 (1997).
- (1997) Protein Sci. , vol.6 , pp. 1101
- Englander, S.W.¹ Mayne, L.² Bai, Y.³ Sosnick, T.R.⁴

29
- 0036382925
- A. I. Dragan and P. L. Privalov, J. Mol. Biol. 321, 891 (2002).
- (2002) J. Mol. Biol. , vol.321 , pp. 891
- Dragan, A.I.¹ Privalov, P.L.²

30
- 0025830469
- J. U. Bowie, R. Luthy, and D. Eisenberg, Science 253, 164 (1991).
- (1991) Science , vol.253 , pp. 164
- Bowie, J.U.¹ Luthy, R.² Eisenberg, D.³

31
- 0029987862
- B. Park and M. Levitt, J. Mol. Biol. 258, 367 (1996).
- (1996) J. Mol. Biol. , vol.258 , pp. 367
- Park, B.¹ Levitt, M.²

32
- 0030628825
- J. N. Onuchic, Z. Luthey-Schulten, and P. G. Wolynes, Annu. Rev. Phys. Chem. 48, 545 (1997).
- (1997) Annu. Rev. Phys. Chem. , vol.48 , pp. 545
- Onuchic, J.N.¹ Luthey-Schulten, Z.² Wolynes, P.G.³

33
- 0023449962
- J. D. Bryngelson and P. G. Wolynes, Proc. Natl. Acad. Sci. USA 84, 7524 (1987).
- (1987) Proc. Natl. Acad. Sci. USA , vol.84 , pp. 7524
- Bryngelson, J.D.¹ Wolynes, P.G.²

34
- 0034710944
- B. Gillespie and K. W. Plaxco, Proc. Natl. Acad. Sci. USA 97, 12014 (2000).
- (2000) Proc. Natl. Acad. Sci. USA , vol.97 , pp. 12014
- Gillespie, B.¹ Plaxco, K.W.²

35
- 0028174310
- A. Šali, E. Shakhnovich, and M. Karplus, Nature 369, 248 (1994).
- (1994) Nature , vol.369 , pp. 248
- Šali, A.¹ Shakhnovich, E.² Karplus, M.³

36
- 0028929204
- H. S. Chan, Nature 373, 664 (1995).
- (1995) Nature , vol.373 , pp. 664
- Chan, H.S.¹

37
- 0030443105
- D. K. Klimov and D. Thirumalai, Proteins Struct. Funct. Genet. 26, 411 (1996).
- (1996) Proteins Struct. Funct. Genet. , vol.26 , pp. 411
- Klimov, D.K.¹ Thirumalai, D.²

38
- 0028963362
- J. N. Onuchic, P. G. Wolynes, Z. Luthey-Schulten, and N. D. Socci, Proc. Natl. Acad. Sci. USA 92, 3626 (1995).
- (1995) Proc. Natl. Acad. Sci. USA , vol.92 , pp. 3626
- Onuchic, J.N.¹ Wolynes, P.G.² Luthey-Schulten, Z.³ Socci, N.D.⁴

39
- 0028924552
- P. G. Wolynes, J. N. Onuchic, and D. Thirumalai, Science 267, 1619 (1995).
- (1995) Science , vol.267 , pp. 1619
- Wolynes, P.G.¹ Onuchic, J.N.² Thirumalai, D.³

40
- 0023517017
- C. R. Matthews, Methods Enzymol. 154, 498 (1987).
- (1987) Methods Enzymol. , vol.154 , pp. 498
- Matthews, C.R.¹

41
- 0025698613
- A. Matouschek, J. T. Kellis, L. Serrano, M. Bycroft, and A. R. Fersht, Nature 346, 440 (1990).
- (1990) Nature , vol.346 , pp. 440
- Matouschek, A.¹ Kellis, J.T.² Serrano, L.³ Bycroft, M.⁴ Fersht, A.R.⁵

42
- 0029015319
- W. A. Houry, D. M. Rothwarf, and H. A. Scheraga, Nature Struct. Biol. 2, 495 (1995).
- (1995) Nature Struct. Biol. , vol.2 , pp. 495
- Houry, W.A.¹ Rothwarf, D.M.² Scheraga, H.A.³

43
- 0042130544
- H. Kaya and H. S. Chan, Proteins Struct. Funct. Genet. 52, 510 (2003).
- (2003) Proteins Struct. Funct. Genet. , vol.52 , pp. 510
- Kaya, H.¹ Chan, H.S.²

44
- 0033574069
- V. S. Pande and D. S. Rokhsar, Proc. Natl. Acad. Sci. USA 96, 1273 (1999).
- (1999) Proc. Natl. Acad. Sci. USA , vol.96 , pp. 1273
- Pande, V.S.¹ Rokhsar, D.S.²

45
- 0042093787
- H. Kaya and H. S. Chan, Phys. Rev. Lett. 90, 258104 (2003).
- (2003) Phys. Rev. Lett. , vol.90 , pp. 258104
- Kaya, H.¹ Chan, H.S.²

46
- 0000710672
- N. D. Socci, J. N. Onuchic, and P. G. Wolynes, J. Chem. Phys. 104, 5860 (1996).
- (1996) J. Chem. Phys. , vol.104 , pp. 5860
- Socci, N.D.¹ Onuchic, J.N.² Wolynes, P.G.³

47
- 0002353848
- (P. Grassberger, G. T. Barkema, and W. Nadler, eds.). World Scientific, Singapore
- H. S. Chan, in "Monte Carlo Approach to Biopolymers and Protein Folding" (P. Grassberger, G. T. Barkema, and W. Nadler, eds.), p. 29. World Scientific, Singapore, 1998.
- (1998) Monte Carlo Approach to Biopolymers and Protein Folding , pp. 29
- Chan, H.S.¹

48
- 0003166498
- H. S. Chan and K. A. Dill, Proteins Struct. Funct. Genet. 30, 2 (1998).
- (1998) Proteins Struct. Funct. Genet. , vol.30 , pp. 2
- Chan, H.S.¹ Dill, K.A.²

49
- 0037459035
- H. Kaya and H. S. Chan, J. Mol. Biol. 326, 911 (2003).
- (2003) J. Mol. Biol. , vol.326 , pp. 911
- Kaya, H.¹ Chan, H.S.²

50
- 0025370815
- K. A. Dill, Biochemistry 29, 7133 (1990).
- (1990) Biochemistry , vol.29 , pp. 7133
- Dill, K.A.¹

51
- 0036172116
- J. G. B. Northey, A. A. Di Nardo, and A. R. Davidson, Nature Struct. Biol. 9, 126 (2002).
- (2002) Nature Struct. Biol. , vol.9 , pp. 126
- Northey, J.G.B.¹ Di Nardo, A.A.² Davidson, A.R.³

52
- 0013496963
- R. Miller, C. A. Danko, M. J. Fasolka, A. C. Balazs, H. S. Chan, and K. A. Dill, J. Chem. Phys. 96, 768 (1992).
- (1992) J. Chem. Phys. , vol.96 , pp. 768
- Miller, R.¹ Danko, C.A.² Fasolka, M.J.³ Balazs, A.C.⁴ Chan, H.S.⁵ Dill, K.A.⁶

53
- 0001103473
- D. Thirumalai and S. A. Woodson, Acc. Chem. Res. 29, 433 (1996).
- (1996) Acc. Chem. Res. , vol.29 , pp. 433
- Thirumalai, D.¹ Woodson, S.A.²

54
- 0001229818
- A. Gutin, A. Sali, V. Abkevich, M. Karplus, and E. I. Shakhnovich, J. Chem. Phys. 108, 6466 (1998).
- (1998) J. Chem. Phys. , vol.108 , pp. 6466
- Gutin, A.¹ Sali, A.² Abkevich, V.³ Karplus, M.⁴ Shakhnovich, E.I.⁵

55
- 0030723486
- P. G. Wolynes, Nature Struct. Biol. 4, 871 (1997).
- (1997) Nature Struct. Biol. , vol.4 , pp. 871
- Wolynes, P.G.¹

56
- 0032725441
- H. S. Chan, Nature Struct. Biol. 6, 994 (1999).
- (1999) Nature Struct. Biol. , vol.6 , pp. 994
- Chan, H.S.¹

57
- 0013527261
- H. S. Chan and E. Bornberg-Bauer, Appl. Bioinform. 1, 121 (2002).
- (2002) Appl. Bioinform. , vol.1 , pp. 121
- Chan, H.S.¹ Bornberg-Bauer, E.²

58
- 0034681133
- H. Nymeyer, N. D. Socci, and J. N. Onuchic, Proc. Natl. Acad. Sci. USA 97, 634 (2000).
- (2000) Proc. Natl. Acad. Sci. USA , vol.97 , pp. 634
- Nymeyer, H.¹ Socci, N.D.² Onuchic, J.N.³

59
- 0020972782
- N. Gō, Annu. Rev. Biophys. Bioeng. 12, 183 (1983).
- (1983) Annu. Rev. Biophys. Bioeng. , vol.12 , pp. 183
- Go, N.¹

60
- 0031565728
- A. R. Panchenko, Z. Luthey-Schulten, R. Cole, and P. G. Wolynes, J. Mol. Biol. 272, 95 (1997).
- (1997) J. Mol. Biol. , vol.272 , pp. 95
- Panchenko, A.R.¹ Luthey-Schulten, Z.² Cole, R.³ Wolynes, P.G.⁴

61
- 0002907864
- (K. Kuwajima and M. Arai, eds.). Elsevier, Amsterdam
- N. Gō, in "Old and New Views of Protein Folding" (K. Kuwajima and M. Arai, eds.), p. 97. Elsevier, Amsterdam, 1999.
- (1999) Old and New Views of Protein Folding , pp. 97
- Go, N.¹

62
- 0034685604
- C. Clementi, H. Nymeyer, and J. N. Onuchic, J. Mol. Biol. 298, 937 (2000).
- (2000) J. Mol. Biol. , vol.298 , pp. 937
- Clementi, C.¹ Nymeyer, H.² Onuchic, J.N.³

63
- 0032502839
- K. W. Plaxco, K. T. Simons, and D. Baker, J. Mol. Biol. 227, 985 (1998).
- (1998) J. Mol. Biol. , vol.227 , pp. 985
- Plaxco, K.W.¹ Simons, K.T.² Baker, D.³

64
- 0037215268
- D. Makarov and K. W. Plaxco, Protein Sci. 12, 17 (2003).
- (2003) Protein Sci. , vol.12 , pp. 17
- Makarov, D.¹ Plaxco, K.W.²

65
- 0042631521
- H. Kaya and H. S. Chan, Proteins Struct. Funct. Genet. 52, 524 (2003).
- (2003) Proteins Struct. Funct. Genet. , vol.52 , pp. 524
- Kaya, H.¹ Chan, H.S.²

66
- 0037423710
- A. I. Jewett, V. S. Pande, and K. W. Plaxco, J. Mol. Biol. 326, 247 (2003).
- (2003) J. Mol. Biol. , vol.326 , pp. 247
- Jewett, A.I.¹ Pande, V.S.² Plaxco, K.W.³

67
- 0032972986
- R. L. Baldwin and G. D. Rose, Trends Biochem. Sci. 24, 26 (1999).
- (1999) Trends Biochem. Sci. , vol.24 , pp. 26
- Baldwin, R.L.¹ Rose, G.D.²

68
- 0028387381
- R. L. Baldwin, BioEssays 16, 207 (1994).
- (1994) BioEssays , vol.16 , pp. 207
- Baldwin, R.L.¹

69
- 85030887856
- S. Marqusee and D. Wildes, Chapter 15, this volume
- S. Marqusee and D. Wildes, Chapter 15, this volume.

70
- 0037214137
- H. Maity, W. K. Lim, J. N. Rumbley, and S. W. Englander, Protein Sci. 12, 153 (2003).
- (2003) Protein Sci. , vol.12 , pp. 153
- Maity, H.¹ Lim, W.K.² Rumbley, J.N.³ Englander, S.W.⁴

71
- 85030888869
- C. Woodward, N. Carulla, and G. Barany, Chapter 17, this volume
- C. Woodward, N. Carulla, and G. Barany, Chapter 17, this volume.

72
- 0037073934
- M. M. Garcia-Mira, M. Sadqi, N. Fischer, J. M. Sanchez-Ruiz, and V. Muñoz, Science 298, 2191 (2002).
- (2002) Science , vol.298 , pp. 2191
- Garcia-Mira, M.M.¹ Sadqi, M.² Fischer, N.³ Sanchez-Ruiz, J.M.⁴ Muñoz, V.⁵

73
- 0033200063
- C. M. Dobson, Trends Biochem. Sci. 24, 329 (1999).
- (1999) Trends Biochem. Sci. , vol.24 , pp. 329
- Dobson, C.M.¹

* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.