Nonglassy kinetics in the folding of a simple single-domain protein

Proceedings of the National Academy of Sciences of the United States of America

Volumn 97, Issue 22, 2000, Pages 12014-12019

  Gillespie, Blake ^a   Plaxco, Kevin W ^a  

^a UNIVERSITY OF CALIFORNIA   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

BACTERIAL PROTEIN; FUNCTIONAL GROUP; POLYMER; PROLINE; PROTEIN L; UNCLASSIFIED DRUG;

ARTICLE; CONFORMATIONAL TRANSITION; CONTROLLED STUDY; DISULFIDE BOND; ENERGY; LOW TEMPERATURE; MELTING POINT; NONHUMAN; PEPTOSTREPTOCOCCUS; PRIORITY JOURNAL; PROTEIN FOLDING; PROTEIN STRUCTURE; THEORY;

CIRCULAR DICHROISM; KINETICS; PROTEIN DENATURATION; PROTEIN FOLDING; TEMPERATURE;

BACTERIA (MICROORGANISMS); PEPTOSTREPTOCOCCUS;

EID: 0034710944     PISSN: 00278424     EISSN: None     Source Type: Journal    
DOI: 10.1073/pnas.97.22.12014     Document Type: Article

References (48)

1. Levinthal, C. (1968) J. Chem. Phys. 65, 44-45.
2. Onuchic, J. N., Lutney-Schulten, Z. & Wolynes, P. G. (1997) Annu. Rev. Phys. Chem. 48, 545-600.
3. Chan, H. S. & Dill, K. A. (1998) Protein Struct. Funct. Genet. 30, 2-33.
4. Pande, V. S., Grosberg, A., Tanaka, T. & Rokhsar, D. S. (1998) Curr. Opin. Struct. Biol. 8, 68-79.
5. Thirumalai, D. & Klimov, D. K. (1999) Curr. Opin. Struct. Biol. 9, 197-207.
6. Bryngelson, J. D. & Wolynes, P. G. (1987) Proc. Natl. Acad. Sci. USA 84, 7524-7528.
7. Onuchic, J. N., Wolynes, P. G., Luthey-Schulten, Z. & Socci, N. D. (1995) Proc. Natl. Acad. Sci. USA 92, 3626-3630.
8. Dill, K. A., Bromberg, S., Yue, K., Fiebig, K. M., Yee, D. P., Thomas, P. D. & Chan, H. S. (1995) Protein Sci. 4, 561-602.
9. Gutin, A., Sali, A., Abkevich, V., Karplus, M. & Shakhnovich, E. I. (1998) J. Chem. Phys. 108, 6466-6483.
10. Pande, V. S. & Rokhsar, D. S. (1999) Proc. Natl. Acad. Sci. USA 96, 1273-1278.
11. Socci, N. D., Onuchic, J. N. & Wolynes, P. G. (1998) Protein Struct. Funct. Genet. 32, 1356-1358.
12. Nymeyer, H., García, A. E. & Onuchic, J. N. (1998) Proc. Natl. Acad. Sci. USA 95, 5921-5928.
13. Skorobogatiy, M., Guo, H. & Zuckermann, M. (1998) J. Chem. Phys. 109, 2528-2535.
14. Thirumalai, D., Ashwin, V. & Bhattacharjee, J. K. (1996) Phys. Rev. Lett. 77, 5385-5388.
15. Angell, C. A. (1995) Science 267, 1924-1935.
16. Sabelko, J., Ervin, J. & Gruebele, M. (1999) Proc. Natl. Acad. Sci. USA 96, 6031-6036.
17. Morozova-Roche, L. A., Jones, J. A., Noppe, W. & Dobson, C. M. (1999) J. Mol. Biol. 289, 1055-1073.
18. Leeson, D. T., Gai, F., Rodriguez, H. M., Gregoret, L. M. & Dyer, R. B. (2000) Proc. Natl. Acad. Sci. USA. 97, 2527-2532.
19. Wikstrom, M., Sjobring, U., Kastern, W., Bjorck, L., Drakenberg, T. & Forsen, S. (1993) Biochemistry 32, 3381-3386.
20. Scalley, M. L., Yi, Q., Gu, H., McCormack, A., Yates, J. R., 3rd & Baker, D. (1997) Biochemistry 36, 3373-3382.
21. Scalley, M. L. & Baker, D. (1997) Proc. Natl. Acad. Sci. USA 94, 10636-10640.
22. Plaxco, K. W. & Baker, D. (1998) Proc. Natl. Acad. Sci. USA 95, 13591-13596.
23. Plaxco, K. W., Millett, I. S., Segel, D. J., Doniach, S. & Baker, D. (1999) Nat. Struct. Biol. 6, 554-556.
24. Scalley, M. L., Nauli, S., Gladwin, S. T. & Baker, D. (1999) Biochemistry 38, 15927-15935.
25. Becktel, W. J. & Schellman, J. A. (1987) Biopolymers 26, 1859-1877.
26. Pace, C. N. (1990) Trends Biochem. Sci. 15, 14-17.
27. Goldstein, R. A., Luthey-Schulten, Z. A. & Wolynes, P. G. (1992) Proc. Natl. Acad. Sci. USA 89, 4918-4922.
28. Guo, Z. & Thirumalai, D. (1996) J. Mol. Biol. 263, 323-343.
29. Reid, K. L., Rodriguez, H. M., Hillier, B. J. & Gregoret, L. M. (1998) Protein Sci. 7, 470-479.
30. Parker, M. J., Spencer, J. & Clarke, A. R. (1995) J. Mol. Biol. 253, 771-786.
31. Van Dael, H., Haezebrouck, P., Morozova, L., Arico-Muendel, C. & Dobson, C. M. (1993) Biochemistry 32, 11886-11894.
32. Khorasanizadeh, S., Peters, I. D., Butt, T. R. & Roder, H. (1993) Biochemistry 32, 7054-7063.
33. Khorasanizadeh, S., Peters, I. D. & Roder, H. (1996) Nat. Struct. Biol. 3, 193-205.
34. Schreiber, G. & Fersht, A. R. (1993) Biochemistry 32, 11195-11203.
35. Kiefhaber, T., Kohler, H. H. & Schmid, F. X. (1992) J. Mol. Biol. 224, 217-229.
36. Clarke, A. R. & Waltho, J. P. (1997) Curr. Opin. Biotechnol. 8, 400-410.
37. Frauenfelder, H., Alberding, N. A., Ansari, A., Braunstein, D., Cowen, B. R., Hong, M. K., Iben, I. E. T., Johnson, J. B., Luck, S., Marden, M. C., et al. (1990) J. Phys. Chem. 94, 1024-1037.
38. Karplus, M. & Weaver, D. L. (1994) Protein Sci. 3, 650-668.
39. Kaya, H. & Chan, H. S. (2000) Protein Struct. Funct. Gen. 40, 637-661.
40. Karplus, M. (1999) J. Phys. Chem. B 104, 11-27.
41. De Prat Gay, G., Ruiz-Sanz, J., Neira, J. L., Itzhaki, L. S. & Fersht, A. R. (1995) Proc. Natl. Acad. Sci. USA 92, 3683-6368.
42. Jing, G. Z., Zhou, B., Xie, L., Liu, L. J. & Liu, Z. G. (1995) Biochim. Biophys. Acta 1250, 189-196.
43. Debe, D. A. & Goddard, W. A., 3rd (1999) J. Mol. Biol. 294, 619-625.
44. Shea, J. E., Onuchic, J. N. & Brooks, C. L., 3rd (1999) Proc. Natl. Acad. Sci. USA 96, 12512-12517.
45. Clementi, C., Jennings, P. A. & Onuchic, J. N. (2000) Proc. Natl. Acad. Sci. USA 97, 5871-5876.
46. Bhattacharyya, R. P. & Sosnick, T. R. (1999) Biochemistry 38, 2601-2609.
47. Jacob, M. & Schmid, F. X. (1999) Biochemistry 38, 13773-13779.
48. Plaxco, K. W., Simons, K. T. & Baker, D. (1998) J. Mol. Biol. 277, 985-994.