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Volumn 144, Issue 1-2, 2003, Pages 95-103

Fast 3D motif search of EM density maps using a locally normalized cross-correlation function

Author keywords

Docking; Fast local correlation; Ribosome; Ryanodine receptor; Sarcoplasmic reticulum; Signature search

Indexed keywords

RYANODINE RECEPTOR;

EID: 0344120722     PISSN: 10478477     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.jsb.2003.09.029     Document Type: Article
Times cited : (51)

References (25)
  • 1
    • 0033082710 scopus 로고    scopus 로고
    • Electron tomography of molecules and cells
    • Baumeister W., Grimm R., Walz J. Electron tomography of molecules and cells. Trends Cell Biol. 9(2):1999;81-85.
    • (1999) Trends Cell Biol. , vol.9 , Issue.2 , pp. 81-85
    • Baumeister, W.1    Grimm, R.2    Walz, J.3
  • 2
    • 0034687769 scopus 로고    scopus 로고
    • Toward detecting and identifying macromolecules in a cellular context: Template matching applied to electron tomograms
    • Böhm J., Frangakis A.S., Hegerl R., Nickell S., Typke D., Baumeister W. Toward detecting and identifying macromolecules in a cellular context: template matching applied to electron tomograms. Proc. Natl. Acad. Sci. 97:2000;14245-14250.
    • (2000) Proc. Natl. Acad. Sci. , vol.97 , pp. 14245-14250
    • Böhm, J.1    Frangakis, A.S.2    Hegerl, R.3    Nickell, S.4    Typke, D.5    Baumeister, W.6
  • 3
    • 0014894609 scopus 로고
    • The reconstruction of a three-dimensional structure from its projections and application to electron microscopy
    • Crowther R.A., DeRosier D.J., Klug A. The reconstruction of a three-dimensional structure from its projections and application to electron microscopy. Proc. R. Soc. Lond. 317:1970;319-340.
    • (1970) Proc. R. Soc. Lond. , vol.317 , pp. 319-340
    • Crowther, R.A.1    Derosier, D.J.2    Klug, A.3
  • 6
    • 0004179720 scopus 로고
    • J. Frank. New York: Plenum
    • Frank J. Electron Tomography. 1992;Plenum, New York.
    • (1992) Electron Tomography
  • 7
    • 0036089703 scopus 로고    scopus 로고
    • Single-particle imaging of macromolecules by cryo-electron microscopy
    • Frank J. Single-particle imaging of macromolecules by cryo-electron microscopy. Annu. Rev. Biomol. Struct. 31:2002;303-319.
    • (2002) Annu. Rev. Biomol. Struct. , vol.31 , pp. 303-319
    • Frank, J.1
  • 8
    • 0020484108 scopus 로고
    • Correspondence analysis of aligned images of biological particles
    • Frank J., van Heel M. Correspondence analysis of aligned images of biological particles. J. Mol. Biol. 161:1982;134-137.
    • (1982) J. Mol. Biol. , vol.161 , pp. 134-137
    • Frank, J.1    Van Heel, M.2
  • 9
    • 0029975088 scopus 로고    scopus 로고
    • SPIDER and WEB: Processing and visualization of images in 3D electron microscopy and related fields
    • Frank J., Radermacher M., Penczek P., Zhu J., Li Y., Ladjadj M., Leith A. SPIDER and WEB: processing and visualization of images in 3D electron microscopy and related fields. J. Struct. Biol. 116:1996;190-199.
    • (1996) J. Struct. Biol. , vol.116 , pp. 190-199
    • Frank, J.1    Radermacher, M.2    Penczek, P.3    Zhu, J.4    Li, Y.5    Ladjadj, M.6    Leith, A.7
  • 13
    • 3943108224 scopus 로고
    • Influence of electron noise on three-dimensional image reconstruction
    • Hegerl R., Hoppe W. Influence of electron noise on three-dimensional image reconstruction. Z. Naturforsch. 31a:1976;1717-1721.
    • (1976) Z. Naturforsch. , vol.31 , pp. 1717-1721
    • Hegerl, R.1    Hoppe, W.2
  • 14
    • 0000750464 scopus 로고
    • Towards automatic three dimensional imaging of large biological structures using intermediate voltage electron microscopy
    • Koster A.J., Braunfeld M.B., Fung J.C., Abbey C.K., Han K.F., Liu W., Chen H., Sedat J.W., Agard D. Towards automatic three dimensional imaging of large biological structures using intermediate voltage electron microscopy. MSA Bull. 23(2):1993;176-188.
    • (1993) MSA Bull. , vol.23 , Issue.2 , pp. 176-188
    • Koster, A.J.1    Braunfeld, M.B.2    Fung, J.C.3    Abbey, C.K.4    Han, K.F.5    Liu, W.6    Chen, H.7    Sedat, J.W.8    Agard, D.9
  • 15
    • 0029379689 scopus 로고
    • The relevance of dose fractionation in tomography of radiation sensitive specimens
    • McEwen B.F., Downing K.H., Glaeser R.M. The relevance of dose fractionation in tomography of radiation sensitive specimens. Ultramicroscopy. 60:1995;357-373.
    • (1995) Ultramicroscopy , vol.60 , pp. 357-373
    • McEwen, B.F.1    Downing, K.H.2    Glaeser, R.M.3
  • 16
    • 0037044862 scopus 로고    scopus 로고
    • Macromolecular architecture in eukaryotic cells visualized by cryoelectron tomography
    • Medalia O., Weber I., Frangakis A.S., Gerisch G., Baumeister W. Macromolecular architecture in eukaryotic cells visualized by cryoelectron tomography. Science. 298:2002;1209-1213.
    • (2002) Science , vol.298 , pp. 1209-1213
    • Medalia, O.1    Weber, I.2    Frangakis, A.S.3    Gerisch, G.4    Baumeister, W.5
  • 19
    • 0028004249 scopus 로고
    • Cryo-electron microscopy and three-dimensional reconstruction of the calcium release channel ryanodine receptor from skeletal muscle
    • Radermacher M., Rao V., Grassucci R., Frank J., Timerman A.P., Fleischer S., Wagenknecht T. Cryo-electron microscopy and three-dimensional reconstruction of the calcium release channel ryanodine receptor from skeletal muscle. J. Cell Biol. 127:1994;411-423.
    • (1994) J. Cell Biol. , vol.127 , pp. 411-423
    • Radermacher, M.1    Rao, V.2    Grassucci, R.3    Frank, J.4    Timerman, A.P.5    Fleischer, S.6    Wagenknecht, T.7
  • 20
    • 0031413603 scopus 로고    scopus 로고
    • Low-dose automated electron tomography: A recent implementation
    • Rath B.K., Marko M., Radermaker M., Frank J. Low-dose automated electron tomography: a recent implementation. J. Struct. Biol. 120:1997;210-218.
    • (1997) J. Struct. Biol. , vol.120 , pp. 210-218
    • Rath, B.K.1    Marko, M.2    Radermaker, M.3    Frank, J.4
  • 21
    • 0037375602 scopus 로고    scopus 로고
    • Particle finding in electron micrographs using fast local correlation algorithm
    • Roseman A.M. Particle finding in electron micrographs using fast local correlation algorithm. Ultramicroscopy. 94:2003;225-236.
    • (2003) Ultramicroscopy , vol.94 , pp. 225-236
    • Roseman, A.M.1
  • 22
    • 0033776245 scopus 로고    scopus 로고
    • Docking structures of domains into maps from cryo-electron microscopy using local correlation
    • Roseman A.M. Docking structures of domains into maps from cryo-electron microscopy using local correlation. Acta. Cryst. D. 56:2000;1332-1340.
    • (2000) Acta. Cryst. D , vol.56 , pp. 1332-1340
    • Roseman, A.M.1
  • 23
    • 0033780164 scopus 로고    scopus 로고
    • Fitting atomic models into electron-microscopy maps
    • Rossmann M.G. Fitting atomic models into electron-microscopy maps. Acta Cryst. D. 56:2000;1341-1349.
    • (2000) Acta Cryst. D , vol.56 , pp. 1341-1349
    • Rossmann, M.G.1
  • 24
    • 0027184774 scopus 로고
    • Difference imaging of adenovirus: Bridging the resolution gap between X-ray crystallography and electron microscopy
    • Stewart P.L., Fuller S.D., Burnett R.M. Difference imaging of adenovirus: bridging the resolution gap between X-ray crystallography and electron microscopy. EMBO J. 12:1993;2589-2599.
    • (1993) EMBO J. , vol.12 , pp. 2589-2599
    • Stewart, P.L.1    Fuller, S.D.2    Burnett, R.M.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.