-
1
-
-
0030185892
-
Legionella-like amebal pathogens - Phylogenetic status and possible role in respiratory disease
-
Adeleke A., Pruckler J., Benson R., Rowbotham T., Halablab M., Fields B. Legionella-like amebal pathogens - phylogenetic status and possible role in respiratory disease. Emerg. Infect Dis. 2:1996;225-230.
-
(1996)
Emerg. Infect Dis.
, vol.2
, pp. 225-230
-
-
Adeleke, A.1
Pruckler, J.2
Benson, R.3
Rowbotham, T.4
Halablab, M.5
Fields, B.6
-
2
-
-
0025183708
-
Basic local alignment search tool
-
Altschul S.F., Gish W., Miller W., Myers E.W., Lipman D.J. Basic local alignment search tool. J. Mol. Biol. 215:1990;403-410. doi: 10.1006/jmbi.1990. 9999.
-
(1990)
J. Mol. Biol.
, vol.215
, pp. 403-410
-
-
Altschul, S.F.1
Gish, W.2
Miller, W.3
Myers, E.W.4
Lipman, D.J.5
-
3
-
-
0031937678
-
Identification of linked Legionella pneumophila genes essential for intracellular growth and evasion of the endocytic pathway
-
id: 0019-9567/98/$04.00+0
-
Andrews H.L., Vogel J.P., Isberg R.R. Identification of linked Legionella pneumophila genes essential for intracellular growth and evasion of the endocytic pathway. Infect. Immun. 66:1998;950-958. id: 0019-9567/98/ $04.00+0.
-
(1998)
Infect. Immun.
, vol.66
, pp. 950-958
-
-
Andrews, H.L.1
Vogel, J.P.2
Isberg, R.R.3
-
4
-
-
0036735169
-
Sequence and genome context analysis of a new molecular class D β-lactamase gene from Legionella pneumophila
-
Avison M.B., Simm A.M. Sequence and genome context analysis of a new molecular class D β-lactamase gene from Legionella pneumophila. J. Antimicrob. Chemother. 50:2002;331-338. doi: 10.1093/jac/dkf135.
-
(2002)
J. Antimicrob. Chemother.
, vol.50
, pp. 331-338
-
-
Avison, M.B.1
Simm, A.M.2
-
5
-
-
0011542799
-
The Pfam protein families database
-
Bateman A., Birney E., Cerruti L., Durbin R., Etwiller L., Eddy S.R., Griffiths-Jones S., Howe K.L., Marshall M., Sonnhammer E.L. The Pfam protein families database. Nucleic Acids Res. 30:2002;276-280.
-
(2002)
Nucleic Acids Res.
, vol.30
, pp. 276-280
-
-
Bateman, A.1
Birney, E.2
Cerruti, L.3
Durbin, R.4
Etwiller, L.5
Eddy, S.R.6
Griffiths-Jones, S.7
Howe, K.L.8
Marshall, M.9
Sonnhammer, E.L.10
-
6
-
-
0035188391
-
Structure determination of human and murine β-defensins reveals structural conservation in the absence of significant sequence similarity
-
Bauer F., Schweimer K., Kluver E., Conejo-Garcia J.-R., Forssmann W.-G., Rosch P., Adermann K., Sticht H. Structure determination of human and murine β-defensins reveals structural conservation in the absence of significant sequence similarity. Protein Sci. 10:2001;2470-2479.
-
(2001)
Protein Sci.
, vol.10
, pp. 2470-2479
-
-
Bauer, F.1
Schweimer, K.2
Kluver, E.3
Conejo-Garcia, J.-R.4
Forssmann, W.-G.5
Rosch, P.6
Adermann, K.7
Sticht, H.8
-
7
-
-
0031837032
-
Classification of the genus Legionella
-
Benson R., Fields B. Classification of the genus Legionella. Semin. Respir. Infect. 13:1998;90-99.
-
(1998)
Semin. Respir. Infect.
, vol.13
, pp. 90-99
-
-
Benson, R.1
Fields, B.2
-
8
-
-
0027472133
-
Two distinct defects in intracellular growth complemented by a single genetic locus in Legionella pneumophila
-
Berger K.H., Isberg R.R. Two distinct defects in intracellular growth complemented by a single genetic locus in Legionella pneumophila. Mol. Microbiol. 7:1993;7-19.
-
(1993)
Mol. Microbiol.
, vol.7
, pp. 7-19
-
-
Berger, K.H.1
Isberg, R.R.2
-
9
-
-
0019142976
-
Evolution of the amino acid substitution in the mammalian myoglobin gene
-
Bogardt R.A., Jones B.N., Dwulet F.E., Garner W.H., Lehman L.D., Gurd F.R. Evolution of the amino acid substitution in the mammalian myoglobin gene. J. Mol. Evol. 15:1980;197-218.
-
(1980)
J. Mol. Evol.
, vol.15
, pp. 197-218
-
-
Bogardt, R.A.1
Jones, B.N.2
Dwulet, F.E.3
Garner, W.H.4
Lehman, L.D.5
Gurd, F.R.6
-
10
-
-
15144352558
-
Comparative genetics of the inv-spa invasion gene complex of Salmonella enterica
-
id: 0021-9193/97/$04.00+0
-
Boyd E.F., Li J., Ochman H., Selander R.K. Comparative genetics of the inv-spa invasion gene complex of Salmonella enterica. J. Bacteriol. 179:1997;1985-1991. id: 0021-9193/97/$04.00+0.
-
(1997)
J. Bacteriol.
, vol.179
, pp. 1985-1991
-
-
Boyd, E.F.1
Li, J.2
Ochman, H.3
Selander, R.K.4
-
11
-
-
0037766764
-
A 65-kilobase pathogenicity island is unique to Philadelphia-1 strains
-
Brassinga A.K.C., Hiltz M.F., Sisson G.R., Morash M.G., Hill N., Garduno E., Edelstein P.H., Garduno R.A., Hoffman P.S. A 65-kilobase pathogenicity island is unique to Philadelphia-1 strains. J. Bacteriol. 185:2003;4630-4637. doi: 10.1128/JB185.15.4630-4637.2003.
-
(2003)
J. Bacteriol.
, vol.185
, pp. 4630-4637
-
-
Brassinga, A.K.C.1
Hiltz, M.F.2
Sisson, G.R.3
Morash, M.G.4
Hill, N.5
Garduno, E.6
Edelstein, P.H.7
Garduno, R.A.8
Hoffman, P.S.9
-
12
-
-
0023714050
-
Legionella pneumophila serogroup lansing 3 isolated from a patient with fatal pneumonia, and descriptions of L. pneumophila subsp. pneumophila subsp. nov., L. pneumophila subsp. fraseri subsp. nov., and L. pneumophila subsp. pascullei subsp. nov
-
Brenner D.J., Steigerwalt A.G., Epple P., Bibb W.F., McKinney R.M., Starnes R.W., Colville J.M., Selander R.K., Edelstein P.H., Moss C.W. Legionella pneumophila serogroup lansing 3 isolated from a patient with fatal pneumonia, and descriptions of L. pneumophila subsp. pneumophila subsp. nov., L. pneumophila subsp. fraseri subsp. nov., and L. pneumophila subsp. pascullei subsp. nov. J. Clin. Microbiol. 26:1988;1695-1703.
-
(1988)
J. Clin. Microbiol.
, vol.26
, pp. 1695-1703
-
-
Brenner, D.J.1
Steigerwalt, A.G.2
Epple, P.3
Bibb, W.F.4
McKinney, R.M.5
Starnes, R.W.6
Colville, J.M.7
Selander, R.K.8
Edelstein, P.H.9
Moss, C.W.10
-
13
-
-
0036580742
-
Sequence polymorphism of dotA and mip alleles mediating invasion and intracellular replication of Legionella pneumophila
-
Bumbaugh A.C., McGraw E.A., Page K.L., Selander R.K., Whittam T.S. Sequence polymorphism of dotA and mip alleles mediating invasion and intracellular replication of Legionella pneumophila. Curr. Microbiol. 44:2002;314-322. doi: 10.1007/s0024-01-0024-6.
-
(2002)
Curr. Microbiol.
, vol.44
, pp. 314-322
-
-
Bumbaugh, A.C.1
McGraw, E.A.2
Page, K.L.3
Selander, R.K.4
Whittam, T.S.5
-
14
-
-
0035035578
-
Type IV secretion: Intercellular transfer of macromolecules by systems ancestrally related to conjugation machines
-
Christie P.J. Type IV secretion: intercellular transfer of macromolecules by systems ancestrally related to conjugation machines. Mol. Microbiol. 40:2001;294-305. doi: 10.1046/j.1365-2958.
-
(2001)
Mol. Microbiol.
, vol.40
, pp. 294-305
-
-
Christie, P.J.1
-
15
-
-
0025340848
-
A mutation in the mip gene results in an attenuation of Legionella pneumophila virulence
-
Cianciotto N.P., Eisenstein B.I., Mody C.H., Engleberg N.C. A mutation in the mip gene results in an attenuation of Legionella pneumophila virulence. J. Infect. Dis. 162:1990;121-126.
-
(1990)
J. Infect. Dis.
, vol.162
, pp. 121-126
-
-
Cianciotto, N.P.1
Eisenstein, B.I.2
Mody, C.H.3
Engleberg, N.C.4
-
16
-
-
0033636197
-
Identification of Icm protein complexes that play distinct roles in the biogenesis of an organelle permissive for Legionella pneumophila intracellular growth
-
Coers J., Kagan J.C., Matthews M., Nagai H., Zuckman D.M., Roy C.R. Identification of Icm protein complexes that play distinct roles in the biogenesis of an organelle permissive for Legionella pneumophila intracellular growth. Mol. Microbiol. 38:2000;719-736. doi: 10.1046/j.1365-2958.2000.02176.x.
-
(2000)
Mol. Microbiol.
, vol.38
, pp. 719-736
-
-
Coers, J.1
Kagan, J.C.2
Matthews, M.3
Nagai, H.4
Zuckman, D.M.5
Roy, C.R.6
-
17
-
-
0032038702
-
Sequence analysis of the mip gene of the soilborne pathogen Legionella longbeachae
-
id: 0019-9567/98/$04.00+0
-
Doyle R.M., Steele T.W., McLennan A.M., Parkinson I.H., Manning P.A., Heuzenroeder M.W. Sequence analysis of the mip gene of the soilborne pathogen Legionella longbeachae. Infect. Immun. 66:1998;1492-1499. id: 0019-9567/98/$04.00+0.
-
(1998)
Infect. Immun.
, vol.66
, pp. 1492-1499
-
-
Doyle, R.M.1
Steele, T.W.2
McLennan, A.M.3
Parkinson, I.H.4
Manning, P.A.5
Heuzenroeder, M.W.6
-
18
-
-
0034971660
-
The Legionella pneumophila IcmR protein exhibits chaperone activity for IcmQ by preventing its participation in high-molecular-weight complexes
-
Dumenil G., Isberg R. The Legionella pneumophila IcmR protein exhibits chaperone activity for IcmQ by preventing its participation in high-molecular-weight complexes. Mol. Microbiol. 40:2001;1113-1127. doi: 10.1046/j.1365-2958.2001.02454.x.
-
(2001)
Mol. Microbiol.
, vol.40
, pp. 1113-1127
-
-
Dumenil, G.1
Isberg, R.2
-
19
-
-
0036314980
-
Legionella and Legionnaires' disease: 25 years of investigation
-
Fields B.S., Benson R.F., Besser R.E. Legionella and Legionnaires' disease: 25 years of investigation. Clin. Microbiol. Rev. 15:2002;506-526. doi: 10.1128/CMR.15.3.506-526.2002.
-
(2002)
Clin. Microbiol. Rev.
, vol.15
, pp. 506-526
-
-
Fields, B.S.1
Benson, R.F.2
Besser, R.E.3
-
20
-
-
0017726281
-
Legionnaires' disease: Description of an epidemic of pneumonia
-
Fraser D.W., Tsai T.R., Orenstein W., Parkin W.E., Beecham H.J., Sharrar R.G., Harris J., Mallison G.F., Martin S.M., McDade J.E., Shepard C.C., Brachman P.S. Legionnaires' disease: description of an epidemic of pneumonia. N. Engl. J. Med. 297:1977;1189-1197.
-
(1977)
N. Engl. J. Med.
, vol.297
, pp. 1189-1197
-
-
Fraser, D.W.1
Tsai, T.R.2
Orenstein, W.3
Parkin, W.E.4
Beecham, H.J.5
Sharrar, R.G.6
Harris, J.7
Mallison, G.F.8
Martin, S.M.9
McDade, J.E.10
Shepard, C.C.11
Brachman, P.S.12
-
21
-
-
0029960031
-
Nucleotide sequence and characterization of the trbABC region of the IncI1 plasmid R64: Existence of the pnd gene for plasmid maintenance within the transfer region
-
id: 0021-9193/96/$04.00+0
-
Furuya N., Komano T. Nucleotide sequence and characterization of the trbABC region of the IncI1 plasmid R64: existence of the pnd gene for plasmid maintenance within the transfer region. J. Bacteriol. 178:1996;1491-1497. id: 0021-9193/96/$04.00+0.
-
(1996)
J. Bacteriol.
, vol.178
, pp. 1491-1497
-
-
Furuya, N.1
Komano, T.2
-
22
-
-
0034730834
-
Structure-based sequence alignment for the beta-trefoil subdomain of the clostridial neurotoxin family provides residue level information about the putative ganglioside binding site
-
Ginalski K., Venclovas C., Lesyng B., Fidelis K. Structure-based sequence alignment for the beta-trefoil subdomain of the clostridial neurotoxin family provides residue level information about the putative ganglioside binding site. FEBS Lett. 482:2000;119-124. doi: 10.1016/S0014-5793(00)01954-2.
-
(2000)
FEBS Lett.
, vol.482
, pp. 119-124
-
-
Ginalski, K.1
Venclovas, C.2
Lesyng, B.3
Fidelis, K.4
-
23
-
-
0033949051
-
Conserved structural features in class i major fimbrial subunits (Pilin) in gram-negative bacteria. Molecular basis of classification in seven subfamilies and identification of intrasubfamily sequence signature motifs which might be implicated in quaternary structure
-
ISSN: 0022-2844
-
Girardeau J.P., Bertin Y., Callebaut I. Conserved structural features in class i major fimbrial subunits (Pilin) in gram-negative bacteria. Molecular basis of classification in seven subfamilies and identification of intrasubfamily sequence signature motifs which might be implicated in quaternary structure. J. Mol. Evol. 50:2000;424-442. ISSN: 0022-2844.
-
(2000)
J. Mol. Evol.
, vol.50
, pp. 424-442
-
-
Girardeau, J.P.1
Bertin, Y.2
Callebaut, I.3
-
24
-
-
0032100688
-
A new beat for the SNARE drum
-
Gotte M., von Mollard G.F. A new beat for the SNARE drum. Trends Cell. Biol. 8:1998;215-218. doi: 10.1016/S0962-8924(98)01272-0.
-
(1998)
Trends Cell. Biol.
, vol.8
, pp. 215-218
-
-
Gotte, M.1
Von Mollard, G.F.2
-
25
-
-
0036460269
-
Pan-European study on culture-proven legionnaires' disease: Distribution of Legionella pneumophila serogroups and monoclonal subgroups
-
Helbig J.H., Bernander S., Castellani Pastoris M., Etienne J., Gaia V., Lauwers S., Lindsay D., Luck P.C., Marques T., Mentula S., Peeters M.F., Pelaz C., Struelens M., Uldum S.A., Wewalka G., Harrison T.G. Pan-European study on culture-proven legionnaires' disease: distribution of Legionella pneumophila serogroups and monoclonal subgroups. Eur. J. Clin. Microbiol. Infect Dis. 21:2002;710-716. doi:10.1007/s10096-002-0820-3.
-
(2002)
Eur. J. Clin. Microbiol. Infect Dis.
, vol.21
, pp. 710-716
-
-
Helbig, J.H.1
Bernander, S.2
Castellani Pastoris, M.3
Etienne, J.4
Gaia, V.5
Lauwers, S.6
Lindsay, D.7
Luck, P.C.8
Marques, T.9
Mentula, S.10
Peeters, M.F.11
Pelaz, C.12
Struelens, M.13
Uldum, S.A.14
Wewalka, G.15
Harrison, T.G.16
-
26
-
-
0031678692
-
SplitsTree: Analyzing and visualizing evolutionary data
-
Huson D. SplitsTree: analyzing and visualizing evolutionary data. Bioinformatics. 14:1998;68-73.
-
(1998)
Bioinformatics
, vol.14
, pp. 68-73
-
-
Huson, D.1
-
28
-
-
0031973809
-
Evidence for pore-forming ability by Legionella pneumophila
-
Kirby J.E., Vogel J.P., Andrews H.L., Isberg R.R. Evidence for pore-forming ability by Legionella pneumophila. Mol. Microbiol. 27:1998;323-336. doi: 10.1046/j.1365-2958.1998.00680.x.
-
(1998)
Mol. Microbiol.
, vol.27
, pp. 323-336
-
-
Kirby, J.E.1
Vogel, J.P.2
Andrews, H.L.3
Isberg, R.R.4
-
29
-
-
0036305718
-
Application of RNA polymerase beta-subunit gene (rpoB) sequences for the molecular differentiation of Legionella species
-
Ko K.S., Lee H.K., Park M.Y., Lee K.-H., Yun Y.-J., Woo S.-Y., Miyamoto H., Kook Y.-H. Application of RNA polymerase beta-subunit gene (rpoB) sequences for the molecular differentiation of Legionella species. J. Clin. Microbiol. 40:2002;2653-2658. doi: 10.1128/JCM.40.7.2653-2658.2002.
-
(2002)
J. Clin. Microbiol.
, vol.40
, pp. 2653-2658
-
-
Ko, K.S.1
Lee, H.K.2
Park, M.Y.3
Lee, K.-H.4
Yun, Y.-J.5
Woo, S.-Y.6
Miyamoto, H.7
Kook, Y.-H.8
-
30
-
-
0036202035
-
Population genetic structure of Legionella pneumophila inferred from rna polymerase gene (rpoB) and DotA gene (dotA) sequences
-
Ko K.S., Lee H.K., Park M.-Y., Park M.-S., Lee K.-H., Woo S.-Y., Yun Y.-J., Kook Y.-H. Population genetic structure of Legionella pneumophila inferred from rna polymerase gene (rpoB) and DotA gene (dotA) sequences. J. Bacteriol. 184:2002;2123-2130. doi: 10.1128/JB.184.8.2123-2130.2002.
-
(2002)
J. Bacteriol.
, vol.184
, pp. 2123-2130
-
-
Ko, K.S.1
Lee, H.K.2
Park, M.-Y.3
Park, M.-S.4
Lee, K.-H.5
Woo, S.-Y.6
Yun, Y.-J.7
Kook, Y.-H.8
-
31
-
-
0033624817
-
The transfer region of IncI1 plasmid R64: Similarities between R64 tra and Legionella icm/dot genes
-
Komano T., Yoshida S., Narahara K., Furuya N. The transfer region of IncI1 plasmid R64: similarities between R64 tra and Legionella icm/dot genes. Mol. Microbiol. 35:2000;1348-1359. doi: 10.1046/j.1365-2958.2000.01769.x.
-
(2000)
Mol. Microbiol.
, vol.35
, pp. 1348-1359
-
-
Komano, T.1
Yoshida, S.2
Narahara, K.3
Furuya, N.4
-
32
-
-
0036139211
-
MEGA2: Molecular evolutionary genetics analysis software
-
Kumar S., Tamura K., Jakobsen I.B., Nei M. MEGA2: molecular evolutionary genetics analysis software. Bioinformatics. 17:2001;1244-1245.
-
(2001)
Bioinformatics
, vol.17
, pp. 1244-1245
-
-
Kumar, S.1
Tamura, K.2
Jakobsen, I.B.3
Nei, M.4
-
33
-
-
0036086410
-
Recent improvements to the SMART domain-based sequence annotation resource
-
Letunic I., Goodstadt L., Dickens N.J., Doerks T., Schultz J., Mott R., Ciccarelli F., Copley R.R., Ponting C.P., Bork P. Recent improvements to the SMART domain-based sequence annotation resource. Nucleic Acids Res. 30:2002;242-244.
-
(2002)
Nucleic Acids Res.
, vol.30
, pp. 242-244
-
-
Letunic, I.1
Goodstadt, L.2
Dickens, N.J.3
Doerks, T.4
Schultz, J.5
Mott, R.6
Ciccarelli, F.7
Copley, R.R.8
Ponting, C.P.9
Bork, P.10
-
34
-
-
0022005270
-
A new method for estimating synonymous and nonsynonymous rates of nucleotide substitution considering the relative likelihood of nucleotide and codon changes
-
id: 0737-4038/85/0202-0201$02.00
-
Li W.H., Wu C.I., Luo C.C. A new method for estimating synonymous and nonsynonymous rates of nucleotide substitution considering the relative likelihood of nucleotide and codon changes. Mol. Biol. Evol. 2:1985;150-174. id: 0737-4038/85/0202-0201$02.00.
-
(1985)
Mol. Biol. Evol.
, vol.2
, pp. 150-174
-
-
Li, W.H.1
Wu, C.I.2
Luo, C.C.3
-
35
-
-
0035107220
-
Chromosomal insertion and excision of a 30 kb unstable genetic element is responsible for phase variation of lipopolysaccharide and other virulence determinants in Legionella pneumophila
-
Luneberg E., Mayer B., Daryab N., Koolstra O., Zahringer U., Rohde M., Swanson J., Frosch M. Chromosomal insertion and excision of a 30. kb unstable genetic element is responsible for phase variation of lipopolysaccharide and other virulence determinants in Legionella pneumophila Mol. Microbiol. 39:2001;1259-1271. doi: 10.1046/j.1365-2958.2001.02314.x.
-
(2001)
Mol. Microbiol.
, vol.39
, pp. 1259-1271
-
-
Luneberg, E.1
Mayer, B.2
Daryab, N.3
Koolstra, O.4
Zahringer, U.5
Rohde, M.6
Swanson, J.7
Frosch, M.8
-
36
-
-
0018415510
-
Two types of amino acid substitutions in protein evolution
-
Miyata T., Miyazawa S., Yasunaga T. Two types of amino acid substitutions in protein evolution. J. Mol. Evol. 12:1979;219-236.
-
(1979)
J. Mol. Evol.
, vol.12
, pp. 219-236
-
-
Miyata, T.1
Miyazawa, S.2
Yasunaga, T.3
-
37
-
-
0037169078
-
A bacterial guanine nucleotide exchange factor activates ARF on Legionella phagosomes
-
Nagai H., Kagan J.C., Zhu X., Kahn R.A., Roy C.R. A bacterial guanine nucleotide exchange factor activates ARF on Legionella phagosomes. Science. 295:2002;679-682.
-
(2002)
Science
, vol.295
, pp. 679-682
-
-
Nagai, H.1
Kagan, J.C.2
Zhu, X.3
Kahn, R.A.4
Roy, C.R.5
-
39
-
-
0344417226
-
The Helicobacter pylori genome: From sequence analysis to structural and functional predictions
-
3.0.CO;2-X"locator-type="doi">doi:10.1002/(SICI) 1097-0134(19990701)36.1<20::AID-PROT2>3.0.CO;2-X
-
Pawlowski K., Zhang B., Rychlewski L., Godzik A. The Helicobacter pylori genome: from sequence analysis to structural and functional predictions. Proteins: Struct., Funct., Genet. 36:1999;20-30. 3.0.CO;2-X" locator-type="doi">doi: 10.1002/(SICI)1097-0134(19990701)36. 1<20::AID-PROT2>3.0.CO;2-X.
-
(1999)
Proteins: Struct., Funct., Genet.
, vol.36
, pp. 20-30
-
-
Pawlowski, K.1
Zhang, B.2
Rychlewski, L.3
Godzik, A.4
-
40
-
-
0036672335
-
Sequence diversity of the internal transcribed spacer (its) region of the rRNA operons among different serogroups of Legionella pneumophila isolates
-
Perez-Luz S., Fernandez J., Rodriguez-Valera F., Pascual L., Moreno C., Amo A., Apraiz D., Catalan V. Sequence diversity of the internal transcribed spacer (its) region of the rRNA operons among different serogroups of Legionella pneumophila isolates. Syst. Appl. Microbiol. 25:2002;212-219. doi:10.1078/072320202320386370.
-
(2002)
Syst. Appl. Microbiol.
, vol.25
, pp. 212-219
-
-
Perez-Luz, S.1
Fernandez, J.2
Rodriguez-Valera, F.3
Pascual, L.4
Moreno, C.5
Amo, A.6
Apraiz, D.7
Catalan, V.8
-
41
-
-
0036568279
-
Improving the prediction of protein secondary structure in three and eight classes using recurrent neural networks and profiles
-
online ISSN: 1097-0134; print ISSN:0887-3585
-
Pollastri G., Przybylski D., Rost B., Baldi P. Improving the prediction of protein secondary structure in three and eight classes using recurrent neural networks and profiles. Proteins. 47:2002;228-235. online ISSN: 1097-0134; print ISSN:0887-3585.
-
(2002)
Proteins
, vol.47
, pp. 228-235
-
-
Pollastri, G.1
Przybylski, D.2
Rost, B.3
Baldi, P.4
-
42
-
-
0038285421
-
Protein secondary structure prediction using nearest neighbor and neural network approach
-
Raghava G.P.S. Protein secondary structure prediction using nearest neighbor and neural network approach. CASP. 4:2000;75-76.
-
(2000)
CASP
, vol.4
, pp. 75-76
-
-
Raghava, G.P.S.1
-
43
-
-
0030924593
-
Interspecies sequence differences in the Mip protein from the genus Legionella: Implications for function and evolutionary relatedness
-
Ratcliff R., Donnellan S.C., Lanser J.A., Manning P.A., Heuzenroeder M.W. Interspecies sequence differences in the Mip protein from the genus Legionella: implications for function and evolutionary relatedness. Mol. Microbiol. 25:1997;1149-1158.
-
(1997)
Mol. Microbiol.
, vol.25
, pp. 1149-1158
-
-
Ratcliff, R.1
Donnellan, S.C.2
Lanser, J.A.3
Manning, P.A.4
Heuzenroeder, M.W.5
-
44
-
-
0031977470
-
Sequence-based classification scheme for the genus Legionella targeting the mip gene
-
id: 0095-1137/98/$04.00+0
-
Ratcliff R.M., Lanser J.A., Manning P.A., Heuzenroeder M.W. Sequence-based classification scheme for the genus Legionella targeting the mip gene. J. Clin. Microbiol. 36:1998;1560-1567. id: 0095-1137/98/$04.00+0.
-
(1998)
J. Clin. Microbiol.
, vol.36
, pp. 1560-1567
-
-
Ratcliff, R.M.1
Lanser, J.A.2
Manning, P.A.3
Heuzenroeder, M.W.4
-
45
-
-
0035174578
-
The species concept for prokaryotes
-
Rosello-Mora R., Amann R. The species concept for prokaryotes. FEMS Microbiol. Lett. 25:2001;39-67. doi: 10.1016/S0168-6445(00)00040-1.
-
(2001)
FEMS Microbiol. Lett.
, vol.25
, pp. 39-67
-
-
Rosello-Mora, R.1
Amann, R.2
-
46
-
-
0029889988
-
PHD: Predicting one-dimensional protein structure by profile based neural networks
-
Rost B. PHD: predicting one-dimensional protein structure by profile based neural networks. Methods Enzymol. 266:1996;525-539.
-
(1996)
Methods Enzymol.
, vol.266
, pp. 525-539
-
-
Rost, B.1
-
47
-
-
0031844330
-
Fold and function predictions for Mycoplasma genitalium proteins
-
ISSN: 1359-0278
-
Rychlewski L., Zhang B., Godzik A. Fold and function predictions for Mycoplasma genitalium proteins. Fold Des. 3:1998;229-238. ISSN: 1359-0278.
-
(1998)
Fold Des.
, vol.3
, pp. 229-238
-
-
Rychlewski, L.1
Zhang, B.2
Godzik, A.3
-
48
-
-
0027443142
-
Identification of Legionella pneumophila genes required for growth within and killing of human macrophages
-
Sadosky A., Wiater L.A., Shuman H.A. Identification of Legionella pneumophila genes required for growth within and killing of human macrophages. Infect. Immun. 61:1993;5361-5373.
-
(1993)
Infect. Immun.
, vol.61
, pp. 5361-5373
-
-
Sadosky, A.1
Wiater, L.A.2
Shuman, H.A.3
-
49
-
-
0023375195
-
The Neighbor-Joining Method: A new method for reconstructing phylogenetic trees
-
id: 0737-4038/87/0
-
Saitou N., Nei M. The Neighbor-Joining Method: a new method for reconstructing phylogenetic trees. Mol. Biol. Evol. 4:1987;406-425. id: 0737-4038/87/0.
-
(1987)
Mol. Biol. Evol.
, vol.4
, pp. 406-425
-
-
Saitou, N.1
Nei, M.2
-
50
-
-
0036203406
-
Genetic and phenotypic differences between Legionella pneumophila strains
-
Samrakandi M.M., Cirillo S.L.G., Ridenour D.A., Bermudez L.E., Cirillo J.D. Genetic and phenotypic differences between Legionella pneumophila strains. J. Clin. Microbiol. 40:2002;1352-1362. doi: 10.1128/JCM.40.4.1352-1362.2002.
-
(2002)
J. Clin. Microbiol.
, vol.40
, pp. 1352-1362
-
-
Samrakandi, M.M.1
Cirillo, S.L.G.2
Ridenour, D.A.3
Bermudez, L.E.4
Cirillo, J.D.5
-
51
-
-
0034237578
-
Large-scale comparison of protein sequence alignment algorithms with structure alignments
-
online ISSN:1097-0134, print ISSN:0887-3585
-
Sauder J.M., Arthur J.W., Dunbrack R.L. Jr. Large-scale comparison of protein sequence alignment algorithms with structure alignments. Proteins: Struct., Funct., Genet. 40:2000;6-22. online ISSN:1097-0134, print ISSN:0887-3585.
-
(2000)
Proteins: Struct., Funct., Genet.
, vol.40
, pp. 6-22
-
-
Sauder, J.M.1
Arthur, J.W.2
Dunbrack, R.L.Jr.3
-
52
-
-
1842406033
-
Characterization of a new region required for macrophage killing by Legionella pneumophila
-
id: 0019-9567/$04.00+0
-
Segal G., Shuman H.A. Characterization of a new region required for macrophage killing by Legionella pneumophila. Infect. Immun. 65:1997;5057-5066. id: 0019-9567/$04.00+0.
-
(1997)
Infect. Immun.
, vol.65
, pp. 5057-5066
-
-
Segal, G.1
Shuman, H.A.2
-
53
-
-
0031663585
-
Intracellular multiplication and human macrophage killing by Legionella pneumophila are inhibited by conjugal components of IncQ plasmid RSF1010
-
Segal G., Shuman H.A. Intracellular multiplication and human macrophage killing by Legionella pneumophila are inhibited by conjugal components of IncQ plasmid RSF1010. Mol. Microbiol. 30:1998;197-208.
-
(1998)
Mol. Microbiol.
, vol.30
, pp. 197-208
-
-
Segal, G.1
Shuman, H.A.2
-
54
-
-
0031858965
-
How is the intracellular fate of the Legionella pneumophila phagosome determined
-
Segal G., Shuman H.A. How is the intracellular fate of the Legionella pneumophila phagosome determined. Trends Microbiol. 6:1998;253-255. doi: 10.1016/S0966-842X(98)01308-0.
-
(1998)
Trends Microbiol.
, vol.6
, pp. 253-255
-
-
Segal, G.1
Shuman, H.A.2
-
55
-
-
0032790237
-
Possible origin of the Legionella pneumophila virulence genes and their relation to Coxiella burnetii
-
Segal G., Shuman H.A. Possible origin of the Legionella pneumophila virulence genes and their relation to Coxiella burnetii. Mol. Microbiol. 33:1999;669-670. doi: 10.1046/j.1365-2958.1999.01511.x.
-
(1999)
Mol. Microbiol.
, vol.33
, pp. 669-670
-
-
Segal, G.1
Shuman, H.A.2
-
56
-
-
0032539674
-
Host cell killing and bacterial conjugation require overlapping sets of genes within a 22-kb region of the Legionella pneumophila genome
-
Segal G., Purcell M., Shuman H.A. Host cell killing and bacterial conjugation require overlapping sets of genes within a 22-kb region of the Legionella pneumophila genome. Proc. Natl. Acad. Sci. USA. 95:1998;1669-1674.
-
(1998)
Proc. Natl. Acad. Sci. USA
, vol.95
, pp. 1669-1674
-
-
Segal, G.1
Purcell, M.2
Shuman, H.A.3
-
57
-
-
0032701004
-
Relationships between a new type iv secretion system and the icm/dot virulence system of Legionella pneumophila
-
Segal G., Russo J.J., Shuman H.A. Relationships between a new type iv secretion system and the icm/dot virulence system of Legionella pneumophila. Mol. Microbiol. 34:1999;799-809. doi: 10.1046/j.1365-2958.1999.01642.x.
-
(1999)
Mol. Microbiol.
, vol.34
, pp. 799-809
-
-
Segal, G.1
Russo, J.J.2
Shuman, H.A.3
-
58
-
-
0038222539
-
Complete genome sequence of the Q-fever pathogen Coxiella burnetii
-
Seshadri R., Paulsen I.T., Eisen J.A., Read T.D., Nelson K.E., Nelson W.C., Ward N.L., Tettelin H., Davidsen T.M., Beanan M.J., Deboy R.T., Daugherty S.C., Brinkac L.M., Madupu R., Dodson R.J., Khouri H.M., Lee K.H., Carty H.A., Scanlan D., Heinzen R.A., Thompson H.A., Samuel J.E., Fraser C.M., Heidelberg J.F. Complete genome sequence of the Q-fever pathogen Coxiella burnetii. Proc. Natl. Acad. Sci. USA. 100:2003;5455-5460. doi 10.1073.
-
(2003)
Proc. Natl. Acad. Sci. USA
, vol.100
, pp. 5455-5460
-
-
Seshadri, R.1
Paulsen, I.T.2
Eisen, J.A.3
Read, T.D.4
Nelson, K.E.5
Nelson, W.C.6
Ward, N.L.7
Tettelin, H.8
Davidsen, T.M.9
Beanan, M.J.10
Deboy, R.T.11
Daugherty, S.C.12
Brinkac, L.M.13
Madupu, R.14
Dodson, R.J.15
Khouri, H.M.16
Lee, K.H.17
Carty, H.A.18
Scanlan, D.19
Heinzen, R.A.20
Thompson, H.A.21
Samuel, J.E.22
Fraser, C.M.23
Heidelberg, J.F.24
more..
-
59
-
-
0036112267
-
Type IVB secretion by intracellular pathogens
-
Sexton J.A., Vogel J.P. Type IVB secretion by intracellular pathogens. Traffic. 3:2002;178-185. doi: 10.1034/j.1600-0854.2002.030303.x.
-
(2002)
Traffic
, vol.3
, pp. 178-185
-
-
Sexton, J.A.1
Vogel, J.P.2
-
60
-
-
0034566380
-
Legionella pneumophila pathogenesis: A fateful journey from amoebae to macrophages
-
Swanson M.S., Hammer B.K. Legionella pneumophila pathogenesis: a fateful journey from amoebae to macrophages. Annu. Rev. Microbiol. 54:2000;567-613.
-
(2000)
Annu. Rev. Microbiol.
, vol.54
, pp. 567-613
-
-
Swanson, M.S.1
Hammer, B.K.2
-
61
-
-
0037352409
-
Comparative assessment of virulence traits in Legionella spp
-
Terry Alli O.A., Zink S., von Lackum N.K., Abu-Kwaik Y. Comparative assessment of virulence traits in Legionella spp. Microbiology. 149:2003;631-641. doi: 10.1099/mic.0.25980-0.
-
(2003)
Microbiology
, vol.149
, pp. 631-641
-
-
Terry Alli, O.A.1
Zink, S.2
Von Lackum, N.K.3
Abu-Kwaik, Y.4
-
62
-
-
0027968068
-
CLUSTAL W: Improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice
-
Thompson J.D., Higgins D.G., Gilbson T.J. CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res. 22:1994;4673-4680.
-
(1994)
Nucleic Acids Res.
, vol.22
, pp. 4673-4680
-
-
Thompson, J.D.1
Higgins, D.G.2
Gilbson, T.J.3
-
63
-
-
0032488861
-
Conjugative transfer by the virulence system of Legionella pneumophila
-
Vogel J.P., Andrews H.L., Wong S.K., Isberg R.R. Conjugative transfer by the virulence system of Legionella pneumophila. Science. 279:1998;873-876.
-
(1998)
Science
, vol.279
, pp. 873-876
-
-
Vogel, J.P.1
Andrews, H.L.2
Wong, S.K.3
Isberg, R.R.4
-
64
-
-
0035155060
-
Formation of a fibrous structure on the surface of Legionella pneumophila associated with exposure of DotH and DotO proteins after intracellular growth
-
Watarai M., Andrews H.L., Isberg R.R. Formation of a fibrous structure on the surface of Legionella pneumophila associated with exposure of DotH and DotO proteins after intracellular growth. Mol. Microbiol. 39:2001;313-329. doi: 10.1046/j.1365-2958.2001.02193.x.
-
(2001)
Mol. Microbiol.
, vol.39
, pp. 313-329
-
-
Watarai, M.1
Andrews, H.L.2
Isberg, R.R.3
-
65
-
-
0032549708
-
SNAREpins: Minimal machinery for membrane fusion
-
Weber T., Zemelman B.V., McNew J.A., Westermann B., Gmachl M., Parlati F., Sollner T.H., Rothman J.E. SNAREpins: minimal machinery for membrane fusion. Cell. 92:1998;759-772.
-
(1998)
Cell
, vol.92
, pp. 759-772
-
-
Weber, T.1
Zemelman, B.V.2
McNew, J.A.3
Westermann, B.4
Gmachl, M.5
Parlati, F.6
Sollner, T.H.7
Rothman, J.E.8
-
66
-
-
12644298688
-
A conserved domain is present in different families of vesicular fusion proteins: A new superfamily
-
Weimbs T., Low S.H., Chapin S.J., Mostov K.E., Bucher P., Hofmann K. A conserved domain is present in different families of vesicular fusion proteins: a new superfamily. Proc. Natl. Acad. Sci. USA. 94:1997;3046-3051.
-
(1997)
Proc. Natl. Acad. Sci. USA
, vol.94
, pp. 3046-3051
-
-
Weimbs, T.1
Low, S.H.2
Chapin, S.J.3
Mostov, K.E.4
Bucher, P.5
Hofmann, K.6
-
67
-
-
0032404442
-
A model for structural similarity between different SNARE complexes based on sequence relationships
-
Weimbs T., Mostov K., Low S.H., Hofmann K. A model for structural similarity between different SNARE complexes based on sequence relationships. Trends Cell Biol. 8:1998;260-262. doi: 10.1016/S0962-8924(98)01285-9.
-
(1998)
Trends Cell Biol.
, vol.8
, pp. 260-262
-
-
Weimbs, T.1
Mostov, K.2
Low, S.H.3
Hofmann, K.4
-
68
-
-
0036889373
-
Inferences from whole-genome sequences of bacterial pathogens
-
Whittam T.S., Bumbaugh A.C. Inferences from whole-genome sequences of bacterial pathogens. Curr. Opin. Genet. Dev. 12:2002;719-725. doi: 10.1016/S0959-437X(02)0036-1.
-
(2002)
Curr. Opin. Genet. Dev.
, vol.12
, pp. 719-725
-
-
Whittam, T.S.1
Bumbaugh, A.C.2
-
69
-
-
0036642514
-
Distribution of Legionella species and serogroups isolated by culture in patients with sporadic community-acquired legionellosis: An international collaborative survey
-
id: 0022-1899/2002/18601-0020$15.00
-
Yu V.L., Plouffe J.F., Castellani Pastoris M., Stout J.E., Schousboe M., Widmer A., Summersgill J., File T., Heath C.M., Paterson D.L., Chereshsky A. Distribution of Legionella species and serogroups isolated by culture in patients with sporadic community-acquired legionellosis: an international collaborative survey. J. Infect. Dis. 186:2002;127-128. id: 0022-1899/2002/ 18601-0020$15.00.
-
(2002)
J. Infect. Dis.
, vol.186
, pp. 127-128
-
-
Yu, V.L.1
Plouffe, J.F.2
Castellani Pastoris, M.3
Stout, J.E.4
Schousboe, M.5
Widmer, A.6
Summersgill, J.7
File, T.8
Heath, C.M.9
Paterson, D.L.10
Chereshsky, A.11
|