-
1
-
-
0025183708
-
Basic local alignment search tool
-
Altschul, S.F., Gish, W., Miller, W., Myers, E.W. & Lipman, D.J. (1990). Basic local alignment search tool. J. Mol. Biol. 215, 403-410.
-
(1990)
J. Mol. Biol.
, vol.215
, pp. 403-410
-
-
Altschul, S.F.1
Gish, W.2
Miller, W.3
Myers, E.W.4
Lipman, D.J.5
-
2
-
-
0026651391
-
Dynamic programming algorithms for biological sequence comparison
-
Pearson, W.R. & Miller, W. (1992). Dynamic programming algorithms for biological sequence comparison. Methods Enzymol. 210, 575-601.
-
(1992)
Methods Enzymol.
, vol.210
, pp. 575-601
-
-
Pearson, W.R.1
Miller, W.2
-
3
-
-
85030333410
-
-
Genetics Computer Group (GCG), Madison, Wisconsin, USA. World Wide Web
-
Wisconsin Package Version 9, Genetics Computer Group (GCG), Madison, Wisconsin, USA. World Wide Web URL: www.gcg.com.
-
Wisconsin Package Version 9
-
-
-
4
-
-
0029310452
-
ANTHEPROT 2.0: A three-dimensional module fully coupled with protein sequence analysis methods
-
Geourjon, C. & Deleage, G. (1995). ANTHEPROT 2.0: a three-dimensional module fully coupled with protein sequence analysis methods. J. Mol. Graphics 13, 209-212.
-
(1995)
J. Mol. Graphics
, vol.13
, pp. 209-212
-
-
Geourjon, C.1
Deleage, G.2
-
6
-
-
0031839544
-
Superior performance in protein homology detection with the BLOCKS database server
-
Henikoff, S., Pietrokovski, S. & Henikoff, J.G. (1998). Superior performance in protein homology detection with the BLOCKS database server. Nucleic Acids Res. 26, 309-312.
-
(1998)
Nucleic Acids Res.
, vol.26
, pp. 309-312
-
-
Henikoff, S.1
Pietrokovski, S.2
Henikoff, J.G.3
-
7
-
-
0025830469
-
A method to identify protein sequences that fold into a known three dimensional structure
-
Bowie, J.U., Luethy, R. & Eisenberg, D. (1991). A method to identify protein sequences that fold into a known three dimensional structure. Science 253, 164-170.
-
(1991)
Science
, vol.253
, pp. 164-170
-
-
Bowie, J.U.1
Luethy, R.2
Eisenberg, D.3
-
8
-
-
0026690571
-
A new approach to protein fold recognition
-
Jones, D.T., Taylor, W.R. & Thornton, J.M. (1992). A new approach to protein fold recognition. Nature 358, 86-89.
-
(1992)
Nature
, vol.358
, pp. 86-89
-
-
Jones, D.T.1
Taylor, W.R.2
Thornton, J.M.3
-
9
-
-
0026726481
-
A topology fingerprint approach to the inverse folding problem
-
Godzik, A., Skolnick, J. & Kolinski, A. (1992). A topology fingerprint approach to the inverse folding problem. J. Mol. Biol. 227, 227-238.
-
(1992)
J. Mol. Biol.
, vol.227
, pp. 227-238
-
-
Godzik, A.1
Skolnick, J.2
Kolinski, A.3
-
10
-
-
0026704815
-
Detection of native-like models for amino acid sequences of unknown three-dimensional structure in a database of known protein conformations
-
Sippl, M.J. & Weitckus, S. (1992). Detection of native-like models for amino acid sequences of unknown three-dimensional structure in a database of known protein conformations. Proteins 13, 258-271.
-
(1992)
Proteins
, vol.13
, pp. 258-271
-
-
Sippl, M.J.1
Weitckus, S.2
-
11
-
-
0027318317
-
An empirical energy function for threading protein sequence through folding motif
-
Bryant, S.H. & Lawrence, C.E. (1993). An empirical energy function for threading protein sequence through folding motif. Proteins 16, 92-112.
-
(1993)
Proteins
, vol.16
, pp. 92-112
-
-
Bryant, S.H.1
Lawrence, C.E.2
-
12
-
-
0023375315
-
Profile analysis: Detection of distantly related proteins
-
Gribskov, M., McLachlan, M. & Eisenberg, D. (1987). Profile analysis: detection of distantly related proteins. Proc. Natl Acad. Sci. USA 84, 4355-4358.
-
(1987)
Proc. Natl Acad. Sci. USA
, vol.84
, pp. 4355-4358
-
-
Gribskov, M.1
McLachlan, M.2
Eisenberg, D.3
-
13
-
-
0029997801
-
Applying motif and profile searches
-
Bork, P. & Gibson, T.J. (1996). Applying motif and profile searches. Methods Enzymol. 266, 162-184.
-
(1996)
Methods Enzymol.
, vol.266
, pp. 162-184
-
-
Bork, P.1
Gibson, T.J.2
-
14
-
-
33646277667
-
Comparison of sequence profiles. Structural predictions with no structure information
-
in press
-
Rychlewski, L., Jaroszewski, L., Zhang, B. & Godzik, A. (1998). Comparison of sequence profiles. Structural predictions with no structure information. Protein Sci., in press.
-
(1998)
Protein Sci.
-
-
Rychlewski, L.1
Jaroszewski, L.2
Zhang, B.3
Godzik, A.4
-
15
-
-
0025026058
-
Comparison of the structure of globins and phycocyanins: Evidence for evolutionary relationship
-
Pastore, A. & Lesk, A.M. (1990). Comparison of the structure of globins and phycocyanins: evidence for evolutionary relationship. Proteins 8, 133-155.
-
(1990)
Proteins
, vol.8
, pp. 133-155
-
-
Pastore, A.1
Lesk, A.M.2
-
16
-
-
0028969335
-
Evolutionary link between glycogen phosphorylase and a DNA modifying enzyme
-
Holm, L. & Sander, C. (1995). Evolutionary link between glycogen phosphorylase and a DNA modifying enzyme. EMBO J. 14, 1287-1293.
-
(1995)
EMBO J.
, vol.14
, pp. 1287-1293
-
-
Holm, L.1
Sander, C.2
-
17
-
-
0029651191
-
Functionally diverse enzyme superfamily that abstracts the a proton of carboxylic acids
-
Babbitt, P.C., et al., & Gerlt, J.A. (1995). Functionally diverse enzyme superfamily that abstracts the a proton of carboxylic acids. Science 267, 1159-1161.
-
(1995)
Science
, vol.267
, pp. 1159-1161
-
-
Babbitt, P.C.1
Gerlt, J.A.2
-
18
-
-
0031302793
-
Distant homology recognition using structural classification of proteins
-
Murzin, A.G. & Bateman, A. (1997). Distant homology recognition using structural classification of proteins. Proteins Suppl. 1, 105-112.
-
(1997)
Proteins
, vol.1 SUPPL
, pp. 105-112
-
-
Murzin, A.G.1
Bateman, A.2
-
19
-
-
0031301752
-
Predicting protein structure using Hidden Markov Models
-
Karplus, K., et al., & Sander, C. (1997). Predicting protein structure using Hidden Markov Models. Proteins Suppl. 1, 134-139.
-
(1997)
Proteins
, vol.1 SUPPL
, pp. 134-139
-
-
Karplus, K.1
Sander, C.2
-
20
-
-
0030801002
-
Gapped BLAST and PSI-BLAST: A new generation of protein database search programs
-
Altschul, S.F., et al., & Lipman, DJ. (1997). Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acid Res. 25, 3389-3402.
-
(1997)
Nucleic Acid Res.
, vol.25
, pp. 3389-3402
-
-
Altschul, S.F.1
Lipman, D.J.2
-
21
-
-
0030724017
-
Assigning folds to the proteins encoded by the genome of Mycoplasma genitalium
-
Fischer, D. & Eisenberg, D. (1997). Assigning folds to the proteins encoded by the genome of Mycoplasma genitalium. Proc. Natl Acad. Sci. USA 94, 11929-11934.
-
(1997)
Proc. Natl Acad. Sci. USA
, vol.94
, pp. 11929-11934
-
-
Fischer, D.1
Eisenberg, D.2
-
22
-
-
0031746105
-
Fold prediction by a hierarchy of sequence and threading methods
-
in press
-
Jaroszewski, L., Rychlewski, L., Zhang, B. & Godzik, A. (1998). Fold prediction by a hierarchy of sequence and threading methods. Protein Sci., in press.
-
(1998)
Protein Sci.
-
-
Jaroszewski, L.1
Rychlewski, L.2
Zhang, B.3
Godzik, A.4
-
23
-
-
0028829125
-
The minimal gene complement of Mycoplasma genitalium
-
Fraser, C.M., et al., & Ventor, J.C. (1995). The minimal gene complement of Mycoplasma genitalium. Science 270, 397-403.
-
(1995)
Science
, vol.270
, pp. 397-403
-
-
Fraser, C.M.1
Ventor, J.C.2
-
24
-
-
0030220165
-
The current state of the art in protein structure prediction
-
Moult, J. (1996). The current state of the art in protein structure prediction. Curr. Opin. Biotechnol. 7, 422-427.
-
(1996)
Curr. Opin. Biotechnol.
, vol.7
, pp. 422-427
-
-
Moult, J.1
-
25
-
-
0030756651
-
Aminoacyl-tRNA synthetases in biology and disease: New evidence for structural and functional diversity in an ancient family of enzymes
-
Francklyn, C., Musier-Forsyth, K. & Martinis, S.A. (1997). Aminoacyl-tRNA synthetases in biology and disease: new evidence for structural and functional diversity in an ancient family of enzymes. RNA 3, 954-960.
-
(1997)
RNA
, vol.3
, pp. 954-960
-
-
Francklyn, C.1
Musier-Forsyth, K.2
Martinis, S.A.3
-
26
-
-
0030806152
-
A conformational switch in Escherichia coli 16S ribosomal RNA during decoding of messenger RNA
-
Lodmell, J.S. & Dahlber, A.E. (1997). A conformational switch in Escherichia coli 16S ribosomal RNA during decoding of messenger RNA. Science 277, 1262-1267.
-
(1997)
Science
, vol.277
, pp. 1262-1267
-
-
Lodmell, J.S.1
Dahlber, A.E.2
-
27
-
-
0031002350
-
The structure of the translational initiation factor IF1 from E. coli contains an oligomer binding motif
-
Sette, M., et al., & Boelens, R. (1997). The structure of the translational initiation factor IF1 from E. coli contains an oligomer binding motif. EMBO J. 16, 1436-1443.
-
(1997)
EMBO J.
, vol.16
, pp. 1436-1443
-
-
Sette, M.1
Boelens, R.2
-
28
-
-
0030792253
-
SCOP: A structural classification of the protein database
-
Hubbard, T.J.P., Murzin, A.G., Brenner, S.E. & Chothia, C. (1997). SCOP: a structural classification of the protein database. Nucleic Acids Res. 25, 236-239.
-
(1997)
Nucleic Acids Res.
, vol.25
, pp. 236-239
-
-
Hubbard, T.J.P.1
Murzin, A.G.2
Brenner, S.E.3
Chothia, C.4
-
29
-
-
0027302043
-
Prediction of protein structure by evaluation of sequence-structure fitness: Aligning sequences to contact profiles derived from 3D structures
-
Ouzounis, C., Sander, C., Scharf, M. & Schneider, R. (1993). Prediction of protein structure by evaluation of sequence-structure fitness: aligning sequences to contact profiles derived from 3D structures. J. Mol. Biol. 232, 805-825.
-
(1993)
J. Mol. Biol.
, vol.232
, pp. 805-825
-
-
Ouzounis, C.1
Sander, C.2
Scharf, M.3
Schneider, R.4
-
30
-
-
0030776390
-
Identifying distantly related protein sequences
-
Pearson, W.R. (1997). Identifying distantly related protein sequences. Comput. Appl. Biosci. 13, 325-332.
-
(1997)
Comput. Appl. Biosci.
, vol.13
, pp. 325-332
-
-
Pearson, W.R.1
-
31
-
-
0030002197
-
A helical arch allowing single-stranded DNA to thread through T5 5'-exonuclease
-
Ceska, T.A., Sayers, J.R., Stier, G. & Suck, D. (1996). A helical arch allowing single-stranded DNA to thread through T5 5'-exonuclease. Nature 382, 90-93.
-
(1996)
Nature
, vol.382
, pp. 90-93
-
-
Ceska, T.A.1
Sayers, J.R.2
Stier, G.3
Suck, D.4
-
32
-
-
0028871814
-
Evaluation of comparative protein modeling by MODELLER
-
Šali, A., Potterton, L., Yuan, F., van Vlijmen, H. & Karplus, M. (1995). Evaluation of comparative protein modeling by MODELLER. Proteins 23, 318-326.
-
(1995)
Proteins
, vol.23
, pp. 318-326
-
-
Šali, A.1
Potterton, L.2
Yuan, F.3
Van Vlijmen, H.4
Karplus, M.5
-
33
-
-
0019202342
-
Differentiation of mycoplasmalates from bacterial protoplast L-forms by assay for penicillin binding
-
Martin, H.H. (1980). Differentiation of mycoplasmalates from bacterial protoplast L-forms by assay for penicillin binding. Arch. Microbiol. 127, 297-299.
-
(1980)
Arch. Microbiol.
, vol.127
, pp. 297-299
-
-
Martin, H.H.1
-
35
-
-
0026656815
-
Analysis of amino acid substitution during divergent evolution
-
Gonnet, G.H., Cohen, M.A. & Benner, S.A. (1992). Analysis of amino acid substitution during divergent evolution. Science 256, 1443-1445.
-
(1992)
Science
, vol.256
, pp. 1443-1445
-
-
Gonnet, G.H.1
Cohen, M.A.2
Benner, S.A.3
-
36
-
-
0025259313
-
Methods for assessing the statistical significance of molecular sequence features by using general scoring schemes
-
Karlin, S. & Altschul, S.F. (1990). Methods for assessing the statistical significance of molecular sequence features by using general scoring schemes. Proc. Natl Acad. Sci. USA 87, 2264-2268.
-
(1990)
Proc. Natl Acad. Sci. USA
, vol.87
, pp. 2264-2268
-
-
Karlin, S.1
Altschul, S.F.2
|