Structure-based sequence alignment for the β-trefoil subdomain of the clostridial neurotoxin family provides residue level information about the putative ganglioside binding site

FEBS Letters

Volumn 482, Issue 1-2, 2000, Pages 119-124

  Ginalski, Krzysztof ^a,b   Venclovas, Ceslovas ^a   Lesyng, Bogdan ^b   Fidelis, Krzysztof ^a  

^a LAWRENCE LIVERMORE NATIONAL LABORATORY   (United States)

^b UNIVERSITY OF WARSAW   (Poland)

Author keywords

trefoil; Botulinum neurotoxin; Ganglioside binding site; Homology modeling; Sequence alignment; Tetanus neurotoxin

Indexed keywords

BACTERIAL TOXIN; GANGLIOSIDE; NEUROTOXIN;

ARTICLE; BINDING SITE; CLOSTRIDIUM; CRYSTAL STRUCTURE; GENETIC PROCEDURES; NONHUMAN; PRIORITY JOURNAL; PROTEIN SECONDARY STRUCTURE; STRUCTURE ANALYSIS; TOXIN ANALYSIS; TOXIN STRUCTURE;

AMINO ACID SEQUENCE; BOTULINUM TOXINS; CLOSTRIDIUM; CONSERVED SEQUENCE; MODELS, MOLECULAR; MOLECULAR SEQUENCE DATA; PROTEIN STRUCTURE, SECONDARY; SEQUENCE ALIGNMENT; SEQUENCE HOMOLOGY, AMINO ACID; TETANUS TOXIN;

LOTUS;

EID: 0034730834     PISSN: 00145793     EISSN: None     Source Type: Journal    
DOI: 10.1016/S0014-5793(00)01954-2     Document Type: Article

References (43)

1. Simpson, L.L. (1989) Botulinum Neurotoxin and Tetanus Toxin, Academic Press, San Diego.
2. Hatheway C.L. Clin. Microbiol. Rev. 3:1990;66-98.
3. Hatheway, C.L. (1993) in: Botulinum and Tetanus Neurotoxins (DasGupta, B.R., Ed.), pp. 491-502, Plenum Press, New York.
4. Montecucco C., Schiavo G. Mol. Microbiol. 13:1994;1-8.
5. Montecucco C., Papini E., Schiavo G. FEBS Lett. 346:1994;92-98.
6. Halpern J.L., Neale E.A. Curr. Top. Microbiol. Immunol. 195:1995;221-241.
7. Price D.L., Griffin J., Young A., Peck K., Stocks A. Science. 188:1975;945-947.
8. Montecucco C., Schiavo G. Q. Rev. Biophys. 28:1995;423-472.
9. Kamata Y., Kimura Y., Hiroi T., Sakaguchi G., Kozaki S. Biochim. Biophys. Acta. 1156:1993;213-218.
10. Kozaki S., Miki A., Kamata Y., Ogasawara J., Sakaguchi G. Infect. Immun. 57:1989;2634-2639.
11. Hoch D.H., Romero-Mira M., Ehrlich B.E., Finkelstein A., DasGupta B.R., Simpson L.L. Proc. Natl. Acad. Sci. USA. 82:1985;1692-1696.
12. Kozaki S., Ogasawara J., Shimote Y., Kamata Y., Sakaguchi G. Infect. Immun. 55:1987;3051-3056.
13. Takamizawa K., Iwamori M., Kozaki S., Sakaguchi G., Tanaka R., Takayama H., Nagai Y. FEBS Lett. 201:1986;229-232.
14. Schengrund C.L., DasGupta B.R., Ringler N.J. J. Neurochem. 57:1991;1024-1032.
15. Nishiki T., Tokuyama Y., Kamata Y., Nemoto Y., Yoshida A., Sato K., Sekiguchi M., Takahashi M., Kozaki S. FEBS Lett. 378:1996;253-257.
16. MacKenzie C.R., Hirama T., Lee K.K., Altman E., Young N.M. J. Biol. Chem. 272:1997;5533-5538.
17. Montecucco C. Trends Biochem. Sci. 11:1986;314-317.
18. Montecucco C., Schiavo G. Trends Biochem. Sci. 18:1993;324-327.
19. Schiavo G., Rossetto O., Catsicas S., Polverino de Laureto P., DasGupta B.R., Benfenati F., Montecucco C. J. Biol. Chem. 268:1993;23784-23787.
20. Schiavo G., Benfenati F., Poulain B., Rossetto O., Polverino de Laureto P., DasGupta B.R., Montecucco C. Nature. 359:1992;832-835.
21. Thompson D.E., Hutson R.A., East A.K., Allaway D., Collins M.D., Richardson P.T. FEMS Microbiol. Lett. 108:1993;175-182.
22. Lebeda F.J., Olson M.A. Proteins. 20:1994;293-300.
23. Minton N.P. Curr. Top. Microbiol. Immunol. 195:1995;161-194.
24. Umland T.C., Wingert L.M., Swaminathan S., Furey W.F., Schmidt J.J., Sax M. Nat. Struct. Biol. 4:1997;788-792.
25. Knapp M., Segelke B., Rupp B. Am. Cryst. Assoc. Abstr. Pap. 25:1998;90.
26. Halpern J.L., Loftus A. J. Biol. Chem. 268:1993;11188-11192.
27. Shapiro R.E., Specht C.D., Collins B.E., Woods A.S., Cotter R.J., Schnaar R.L. J. Biol. Chem. 272:1997;30380-30386.
28. Kubota T., Watanabe T., Yokosawa N., Tsuzuki K., Indoh T., Moriishi K., Sanda K., Maki Y., Inoue K., Fujii N. Appl. Environ. Microbiol. 63:1997;1214-1218.
29. Kamata Y., Yoshimoto M., Kozaki S. Toxicon. 35:1997;1337-1340.
30. Murzin A.G., Lesk A.M., Chothia C. J. Mol. Biol. 223:1992;531-543.
31. Venclovas C., Petersen C., Fidelis K. Protein Sci. 7:(Suppl. 1):1998;168.
32. Lacy D.B., Tepp W., Cohen A.C., DasGupta B.R., Stevens R.C. Nat. Struct. Biol. 5:1998;898-902.
33. Lacy D.B., Stevens R.C. J. Mol. Biol. 291:1999;1091-1104.
34. Emsley P., Fotinou C., Black I., Fairweather N.F., Charles I.G., Watts C., Hewitt E., Isaacs N.W. J. Biol. Chem. 275:2000;8889-8894.
35. Thompson J.D., Higgins D.G., Gibson T.J. Nucleic Acids Res. 22:1994;4673-4680.
36. Bower M.J., Cohen F.E., Dunbrack R.L. Jr. J. Mol. Biol. 267:1997;1268-1282.
37. Martin A.C., MacArthur M.W., Thornton J.M. Proteins Suppl. 1:1997;14-28.
38. Venclovas C., Ginalski K., Fidelis K. Proteins Suppl. 3:1999;73-80.
39. Merritt E.A., Sarfaty S., Jobling M.G., Chang T., Holmes R.K., Hirst T.R., Hol W.G. Protein Sci. 6:1997;1516-1528.
40. Sixma T.K., Pronk S.E., Kalk K.H., van Zanten B.A., Berghuis A.M., Hol W.G. Nature. 355:1992;561-564.
41. van den Akker F., Steensma E., Hol W.G. Protein Sci. 5:1996;1184-1188.
42. Kabsch W., Sander C. Biopolymers. 22:1983;2577-2637.
43. Nicholls A., Sharp K.A., Honig B. Proteins. 11:1991;281-296.