-
1
-
-
2942689400
-
Shaping bacterial genomes with integrative and conjugative elements
-
V. Burrus, and M.K. Waldor Shaping bacterial genomes with integrative and conjugative elements Res. Microbiol. 155 2004 376 386
-
(2004)
Res. Microbiol.
, vol.155
, pp. 376-386
-
-
Burrus, V.1
Waldor, M.K.2
-
2
-
-
0031928701
-
Tn916 family conjugative transposons and dissemination of antimicrobial resistance determinants
-
L.B. Rice Tn916 family conjugative transposons and dissemination of antimicrobial resistance determinants Antimicrob. Agents Chemother. 42 1998 1871 1877
-
(1998)
Antimicrob. Agents Chemother.
, vol.42
, pp. 1871-1877
-
-
Rice, L.B.1
-
4
-
-
0029046947
-
Unconstrained bacterial promiscuity: The Tn916-Tn1545 family of conjugative transposons
-
D.B. Clewell, S.E. Flannagan, and D.D. Jaworski Unconstrained bacterial promiscuity: the Tn916-Tn1545 family of conjugative transposons Trends Microbiol. 3 1995 229 236
-
(1995)
Trends Microbiol.
, vol.3
, pp. 229-236
-
-
Clewell, D.B.1
Flannagan, S.E.2
Jaworski, D.D.3
-
5
-
-
0028889420
-
Conjugative transposons: An unusual and diverse set of integrated gene transfer elements
-
A.A. Salyers, N.B. Shoemaker, A.M. Stevens, and L.Y. Li Conjugative transposons: an unusual and diverse set of integrated gene transfer elements Microbiol. Rev. 59 1995 579 590
-
(1995)
Microbiol. Rev.
, vol.59
, pp. 579-590
-
-
Salyers, A.A.1
Shoemaker, N.B.2
Stevens, A.M.3
Li, L.Y.4
-
6
-
-
0029986215
-
A new type of conjugative transposon encodes resistance to sulfamethoxazole, trimethoprim, and streptomycin in Vibrio cholerae O139
-
M.K. Waldor, H. Tschäpe, and J.J. Mekalanos A new type of conjugative transposon encodes resistance to sulfamethoxazole, trimethoprim, and streptomycin in Vibrio cholerae O139 J. Bacteriol. 178 1996 4157 4165
-
(1996)
J. Bacteriol.
, vol.178
, pp. 4157-4165
-
-
Waldor, M.K.1
Tschäpe, H.2
Mekalanos, J.J.3
-
7
-
-
0026078804
-
Tn5253, the pneumococcal omega (cat tet) BM6001 element, is a composite structure of two conjugative transposons, Tn5251 and Tn5252
-
P. Ayoubi, A.O. Kilic, and M.N. Vijayakumar Tn5253, the pneumococcal omega (cat tet) BM6001 element, is a composite structure of two conjugative transposons, Tn5251 and Tn5252 J. Bacteriol. 173 1991 1617 1622
-
(1991)
J. Bacteriol.
, vol.173
, pp. 1617-1622
-
-
Ayoubi, P.1
Kilic, A.O.2
Vijayakumar, M.N.3
-
8
-
-
0034003481
-
Characterization of the Tn916-like transposon Tn3872 in a strain of Abiotrophia defectiva (Streptococcus defectivus) causing sequential episodes of endocarditis in a child
-
C. Poyart, G. Quesne, P. Acar, P. Berche, and P. Trieu-Cuot Characterization of the Tn916-like transposon Tn3872 in a strain of Abiotrophia defectiva (Streptococcus defectivus) causing sequential episodes of endocarditis in a child Antimicrob. Agents Chemother. 44 2000 790 793
-
(2000)
Antimicrob. Agents Chemother.
, vol.44
, pp. 790-793
-
-
Poyart, C.1
Quesne, G.2
Acar, P.3
Berche, P.4
Trieu-Cuot, P.5
-
9
-
-
0031783527
-
Genetic linkage and cotransfer of a novel, vanB-containing transposon (Tn5382) and a low-affinity penicillin-binding protein 5 gene in a clinical vancomycin-resistant Enterococcus faecium isolate
-
L.L. Carias, S.D. Rudin, C.J. Donskey, and L.B. Rice Genetic linkage and cotransfer of a novel, vanB-containing transposon (Tn5382) and a low-affinity penicillin-binding protein 5 gene in a clinical vancomycin-resistant Enterococcus faecium isolate J. Bacteriol. 180 1998 4426 4434
-
(1998)
J. Bacteriol.
, vol.180
, pp. 4426-4434
-
-
Carias, L.L.1
Rudin, S.D.2
Donskey, C.J.3
Rice, L.B.4
-
10
-
-
0028098113
-
Genetic and molecular studies of a composite chromosomal element (Tn3705) containing a Tn916-modified structure (Tn3704) in Streptococcus anginosus F22
-
D. Clermont, and T. Horaud Genetic and molecular studies of a composite chromosomal element (Tn3705) containing a Tn916-modified structure (Tn3704) in Streptococcus anginosus F22 Plasmid 31 1994 40 48
-
(1994)
Plasmid
, vol.31
, pp. 40-48
-
-
Clermont, D.1
Horaud, T.2
-
11
-
-
0027962445
-
Nucleotide sequence of the 18-kb conjugative transposon Tn916 from Enterococcus faecalis
-
S.E. Flannagan, L.A. Zitzow, Y.A. Su, and D.B. Clewell Nucleotide sequence of the 18-kb conjugative transposon Tn916 from Enterococcus faecalis Plasmid 32 1994 350 354
-
(1994)
Plasmid
, vol.32
, pp. 350-354
-
-
Flannagan, S.E.1
Zitzow, L.A.2
Su, Y.A.3
Clewell, D.B.4
-
12
-
-
0024827010
-
Excision and insertion of the conjugative transposon Tn916 involves a novel recombination mechanism
-
M.G. Caparon, and J.R. Scott Excision and insertion of the conjugative transposon Tn916 involves a novel recombination mechanism Cell 59 1989 1027 1034
-
(1989)
Cell
, vol.59
, pp. 1027-1034
-
-
Caparon, M.G.1
Scott, J.R.2
-
13
-
-
0029796617
-
Conjugative transposon Tn916: Evidence for excision with formation of 5′-protruding termini
-
R. Manganelli, S. Ricci, and G. Pozzi Conjugative transposon Tn916: evidence for excision with formation of 5′-protruding termini J. Bacteriol. 178 1996 5813 5816
-
(1996)
J. Bacteriol.
, vol.178
, pp. 5813-5816
-
-
Manganelli, R.1
Ricci, S.2
Pozzi, G.3
-
14
-
-
0028216655
-
Conjugative transposition of Tn916: Preferred targets and evidence for conjugative transfer of a single strand and for a double-stranded circular intermediate
-
J.R. Scott, F. Bringel, D. Marra, G. Van Alstine, and C.K. Rudy Conjugative transposition of Tn916: preferred targets and evidence for conjugative transfer of a single strand and for a double-stranded circular intermediate Mol. Microbiol. 11 1994 1099 1108
-
(1994)
Mol. Microbiol.
, vol.11
, pp. 1099-1108
-
-
Scott, J.R.1
Bringel, F.2
Marra, D.3
Van Alstine, G.4
Rudy, C.K.5
-
15
-
-
0030796354
-
The joint of Tn916 circular intermediates is a homoduplex in Enterococcus faecalis
-
R. Manganelli, S. Ricci, and G. Pozzi The joint of Tn916 circular intermediates is a homoduplex in Enterococcus faecalis Plasmid 38 1997 71 78
-
(1997)
Plasmid
, vol.38
, pp. 71-78
-
-
Manganelli, R.1
Ricci, S.2
Pozzi, G.3
-
16
-
-
0031921950
-
Circularization of Tn916 is required for expression of the transposon-encoded transfer functions: Characterization of long tetracyclin-inducible transcripts reading through the attachment site
-
J. Celli, and P. Trieu-Cuot Circularization of Tn916 is required for expression of the transposon-encoded transfer functions: characterization of long tetracyclin-inducible transcripts reading through the attachment site Mol. Microbiol. 28 1998 103 117
-
(1998)
Mol. Microbiol.
, vol.28
, pp. 103-117
-
-
Celli, J.1
Trieu-Cuot, P.2
-
17
-
-
0024468976
-
Molecular characterization of two proteins involved in the excision of the conjugative transposon Tn1545: Homologies with other site-specific recombinases
-
C. Poyart-Salmeron, P. Trieu-Cuot, C. Carlier, and P. Courvalin Molecular characterization of two proteins involved in the excision of the conjugative transposon Tn1545: homologies with other site-specific recombinases EMBO J. 8 1989 2425 2433
-
(1989)
EMBO J.
, vol.8
, pp. 2425-2433
-
-
Poyart-Salmeron, C.1
Trieu-Cuot, P.2
Carlier, C.3
Courvalin, P.4
-
18
-
-
0025815974
-
Conjugative transposition of Tn916 requires the excisive and integrative activities of the transposon-encoded integrase
-
W.M. Storrs, C. Carlier, C. Poyart-Salmeron, P. Trieu-Cuot, and P. Courvalin Conjugative transposition of Tn916 requires the excisive and integrative activities of the transposon-encoded integrase J. Bacteriol. 173 1991 4347 4352
-
(1991)
J. Bacteriol.
, vol.173
, pp. 4347-4352
-
-
Storrs, W.M.1
Carlier, C.2
Poyart-Salmeron, C.3
Trieu-Cuot, P.4
Courvalin, P.5
-
19
-
-
0027368351
-
Characterization of the left 4 kb of conjugative transposon Tn916: Determinants involved in excision
-
Y.A. Su, and D.B. Clewell Characterization of the left 4 kb of conjugative transposon Tn916: determinants involved in excision Plasmid 30 1993 234 250
-
(1993)
Plasmid
, vol.30
, pp. 234-250
-
-
Su, Y.A.1
Clewell, D.B.2
-
20
-
-
0030816550
-
The integrase family of tyrosine recombinases: Evolution of a conserved active site domain
-
D. Esposito, and J.J. Scocca The integrase family of tyrosine recombinases: evolution of a conserved active site domain Nucl. Acids Res. 25 1997 3605 3614
-
(1997)
Nucl. Acids Res.
, vol.25
, pp. 3605-3614
-
-
Esposito, D.1
Scocca, J.J.2
-
21
-
-
0038659759
-
Similarities and differences among 105 members of the Int family of site-specific recombinases
-
S.E. Nunes-Duby, H.J. Kwon, R.S. Tirumalai, T. Ellenberger, and A. Landy Similarities and differences among 105 members of the Int family of site-specific recombinases Nucl. Acids Res. 26 1998 391 406
-
(1998)
Nucl. Acids Res.
, vol.26
, pp. 391-406
-
-
Nunes-Duby, S.E.1
Kwon, H.J.2
Tirumalai, R.S.3
Ellenberger, T.4
Landy, A.5
-
22
-
-
85158019877
-
Lambda integrase and the lambda Int family
-
N.L. Craig R. Craigie M. Gellert A.M. Lambowitz ASM Press Washington, DC
-
M.A. Azaro, and A. Landy Lambda integrase and the lambda Int family N.L. Craig R. Craigie M. Gellert A.M. Lambowitz Mobile DNA II 2002 ASM Press Washington, DC 118 148
-
(2002)
Mobile DNA II
, pp. 118-148
-
-
Azaro, M.A.1
Landy, A.2
-
23
-
-
0028353171
-
Conjugative transposition: Tn916 integrase contains two independent DNA binding domains that recognize different DNA sequences
-
F. Lu, and G. Churchward Conjugative transposition: Tn916 integrase contains two independent DNA binding domains that recognize different DNA sequences EMBO J. 13 1994 1541 1548
-
(1994)
EMBO J.
, vol.13
, pp. 1541-1548
-
-
Lu, F.1
Churchward, G.2
-
24
-
-
0036202271
-
Xis protein binding to the left arm stimulates excision of conjugative transposon Tn916
-
K.M. Connolly, M. Iwahara, and R.T. Clubb Xis protein binding to the left arm stimulates excision of conjugative transposon Tn916 J. Bacteriol. 184 2002 2088 2099
-
(2002)
J. Bacteriol.
, vol.184
, pp. 2088-2099
-
-
Connolly, K.M.1
Iwahara, M.2
Clubb, R.T.3
-
25
-
-
0032925508
-
Excision of the conjugative transposon Tn916 in Lactococcus lactis
-
D. Marra, J.G. Smith, and J.R. Scott Excision of the conjugative transposon Tn916 in Lactococcus lactis Appl. Environ. Microbiol. 65 1999 2230 2231
-
(1999)
Appl. Environ. Microbiol.
, vol.65
, pp. 2230-2231
-
-
Marra, D.1
Smith, J.G.2
Scott, J.R.3
-
26
-
-
0032938505
-
Regulation of excision of the conjugative transposon Tn916
-
D. Marra, and J.R. Scott Regulation of excision of the conjugative transposon Tn916 Mol. Microbiol. 31 1999 609 621
-
(1999)
Mol. Microbiol.
, vol.31
, pp. 609-621
-
-
Marra, D.1
Scott, J.R.2
-
27
-
-
0030800329
-
Excision of a conjugative transposon in vitro by the Int and Xis proteins of Tn916
-
C. Rudy, K.L. Taylor, D. Hinerfeld, J.R. Scott, and G. Churchward Excision of a conjugative transposon in vitro by the Int and Xis proteins of Tn916 Nucl. Acids Res. 25 1997 4061 4066
-
(1997)
Nucl. Acids Res.
, vol.25
, pp. 4061-4066
-
-
Rudy, C.1
Taylor, K.L.2
Hinerfeld, D.3
Scott, J.R.4
Churchward, G.5
-
28
-
-
0031000745
-
DNA binding by the Xis protein of the conjugative transposon Tn916
-
C.K. Rudy, J.R. Scott, and G. Churchward DNA binding by the Xis protein of the conjugative transposon Tn916 J. Bacteriol. 179 1997 2567 2572
-
(1997)
J. Bacteriol.
, vol.179
, pp. 2567-2572
-
-
Rudy, C.K.1
Scott, J.R.2
Churchward, G.3
-
29
-
-
0023667024
-
Site-specific recombination intermediates trapped with suicide substrates
-
S.E. Nunes-Düby, L. Matsumoto, and A. Landy Site-specific recombination intermediates trapped with suicide substrates Cell 50 1987 779 788
-
(1987)
Cell
, vol.50
, pp. 779-788
-
-
Nunes-Düby, S.E.1
Matsumoto, L.2
Landy, A.3
-
30
-
-
0024431718
-
Half-att site substrates reveal the homology independence and minimal protein requirements for productive synapsis in lambda excisive recombination
-
S.E. Nunes-Düby, L. Matsumoto, and A. Landy Half-att site substrates reveal the homology independence and minimal protein requirements for productive synapsis in lambda excisive recombination Cell 59 1989 197 206
-
(1989)
Cell
, vol.59
, pp. 197-206
-
-
Nunes-Düby, S.E.1
Matsumoto, L.2
Landy, A.3
-
31
-
-
0023644993
-
Protein-protein interactions in a higher-order structure direct lambda site-specific recombination
-
J.F. Thompson, L.M. de Vargas, S.E. Skinner, and A. Landy Protein-protein interactions in a higher-order structure direct lambda site-specific recombination J. Mol. Biol. 195 1987 481 493
-
(1987)
J. Mol. Biol.
, vol.195
, pp. 481-493
-
-
Thompson, J.F.1
De Vargas, L.M.2
Skinner, S.E.3
Landy, A.4
-
32
-
-
0028893895
-
The Holliday junction intermediates of lambda integrative and excisive recombination respond differently to the bending proteins integration host factor and excisionase
-
B. Franz, and A. Landy The Holliday junction intermediates of lambda integrative and excisive recombination respond differently to the bending proteins integration host factor and excisionase EMBO J. 14 1995 397 406
-
(1995)
EMBO J.
, vol.14
, pp. 397-406
-
-
Franz, B.1
Landy, A.2
-
33
-
-
0022351236
-
Control of directionality in lambda site specific recombination
-
W. Bushman, J.F. Thompson, L. Vargas, and A. Landy Control of directionality in lambda site specific recombination Science 230 1985 906 911
-
(1985)
Science
, vol.230
, pp. 906-911
-
-
Bushman, W.1
Thompson, J.F.2
Vargas, L.3
Landy, A.4
-
34
-
-
0025223119
-
Mapping of a higher order protein-DNA complex: Two kinds of long-range interactions in lambda attL
-
S. Kim, L. Moitoso de Vargas, S.E. Nunes-Duby, and A. Landy Mapping of a higher order protein-DNA complex: two kinds of long-range interactions in lambda attL Cell 63 1990 773 781
-
(1990)
Cell
, vol.63
, pp. 773-781
-
-
Kim, S.1
Moitoso De Vargas, L.2
Nunes-Duby, S.E.3
Landy, A.4
-
35
-
-
0026537332
-
Lambda Int protein bridges between higher order complexes at distant chromosomal loci attL and attR
-
S. Kim, and A. Landy Lambda Int protein bridges between higher order complexes at distant chromosomal loci attL and attR Science 256 1992 198 203
-
(1992)
Science
, vol.256
, pp. 198-203
-
-
Kim, S.1
Landy, A.2
-
36
-
-
0020397021
-
Site-specific DNA condensation and pairing mediated by the it protein of bacteriophage lambda
-
M. Better, C. Lu, R.C. Williams, and H. Echols Site-specific DNA condensation and pairing mediated by the it protein of bacteriophage lambda Proc. Natl Acad Sci. USA 79 1982 5837 5841
-
(1982)
Proc. Natl Acad Sci. USA
, vol.79
, pp. 5837-5841
-
-
Better, M.1
Lu, C.2
Williams, R.C.3
Echols, H.4
-
37
-
-
0020651375
-
Role of the Xis protein of bacteriophage lambda in a specific reactive complex at the attR prophage attachment site
-
M. Better, S. Wickner, J. Auerbach, and H. Echols Role of the Xis protein of bacteriophage lambda in a specific reactive complex at the attR prophage attachment site Cell 32 1983 161 168
-
(1983)
Cell
, vol.32
, pp. 161-168
-
-
Better, M.1
Wickner, S.2
Auerbach, J.3
Echols, H.4
-
38
-
-
0026008164
-
A switch in the formation of alternative DNA loops modulates lambda site-specific recombination
-
L. Moitoso de Vargas, and A. Landy A switch in the formation of alternative DNA loops modulates lambda site-specific recombination Proc. Natl Acad Sci. USA 88 1991 588 592
-
(1991)
Proc. Natl Acad Sci. USA
, vol.88
, pp. 588-592
-
-
Moitoso De Vargas, L.1
Landy, A.2
-
39
-
-
0023771741
-
Empirical estimation of protein-induced DNA bending angles: Application to λ site-specific recombination complexes
-
J. Thompson, and A. Landy Empirical estimation of protein-induced DNA bending angles: application to λ site-specific recombination complexes Nucl. Acids Res. 16 1988 9687 9705
-
(1988)
Nucl. Acids Res.
, vol.16
, pp. 9687-9705
-
-
Thompson, J.1
Landy, A.2
-
40
-
-
0023651267
-
Cellular factors couple recombination with growth phase: Characterization of a new component in the lambda site-specific recombination pathway
-
J.F. Thompson, L. Moitoso de Vargas, C. Koch, R. Kahmann, and A. Landy Cellular factors couple recombination with growth phase: characterization of a new component in the lambda site-specific recombination pathway Cell 50 1987 901 908
-
(1987)
Cell
, vol.50
, pp. 901-908
-
-
Thompson, J.F.1
Moitoso De Vargas, L.2
Koch, C.3
Kahmann, R.4
Landy, A.5
-
41
-
-
0020355550
-
Purification of the bacteriophage lambda xis gene product required for lambda excisive recombination
-
K. Abremski, and S. Gottesman Purification of the bacteriophage lambda xis gene product required for lambda excisive recombination J. Biol. Chem. 257 1982 9658 9662
-
(1982)
J. Biol. Chem.
, vol.257
, pp. 9658-9662
-
-
Abremski, K.1
Gottesman, S.2
-
42
-
-
0036928819
-
Regulation of directionality in bacteriophage lambda site-specific recombination: Structure of the Xis protein
-
M.D. Sam, C.V. Papagiannis, K.M. Connolly, L. Corselli, J. Iwahara, and J. Lee Regulation of directionality in bacteriophage lambda site-specific recombination: structure of the Xis protein J. Mol. Biol. 324 2002 791 805
-
(2002)
J. Mol. Biol.
, vol.324
, pp. 791-805
-
-
Sam, M.D.1
Papagiannis, C.V.2
Connolly, K.M.3
Corselli, L.4
Iwahara, J.5
Lee, J.6
-
43
-
-
0032881672
-
The frequency of conjugative transposition of Tn916 is not determined by the frequency of excision
-
D. Marra, B. Pethel, G.G. Churchward, and J.R. Scott The frequency of conjugative transposition of Tn916 is not determined by the frequency of excision J. Bacteriol. 181 1999 5414 5418
-
(1999)
J. Bacteriol.
, vol.181
, pp. 5414-5418
-
-
Marra, D.1
Pethel, B.2
Churchward, G.G.3
Scott, J.R.4
-
44
-
-
0034786513
-
Xis protein of the conjugative transposon Tn916 plays dual opposing roles in transposon excision
-
D. Hinerfeld, and G. Churchward Xis protein of the conjugative transposon Tn916 plays dual opposing roles in transposon excision Mol. Microbiol. 41 2001 1459 1467
-
(2001)
Mol. Microbiol.
, vol.41
, pp. 1459-1467
-
-
Hinerfeld, D.1
Churchward, G.2
-
45
-
-
0035368920
-
Control of directionality in integrase-mediated recombination: Examination of recombination directionality factors (RDFs) including Xis and Cox proteins
-
J.A. Lewis, and G.F. Hatfull Control of directionality in integrase-mediated recombination: examination of recombination directionality factors (RDFs) including Xis and Cox proteins Nucl. Acids Res. 29 2001 2205 2216
-
(2001)
Nucl. Acids Res.
, vol.29
, pp. 2205-2216
-
-
Lewis, J.A.1
Hatfull, G.F.2
-
46
-
-
0030991671
-
Purification and characterization of HP1 Cox and definition of its role in controlling the direction of site-specific recombination
-
D. Esposito, and J.J. Scocca Purification and characterization of HP1 Cox and definition of its role in controlling the direction of site-specific recombination J. Biol. Chem. 272 1997 8660 8670
-
(1997)
J. Biol. Chem.
, vol.272
, pp. 8660-8670
-
-
Esposito, D.1
Scocca, J.J.2
-
47
-
-
0037459040
-
Control of directionality in L5 integrase-mediated site-specific recombination
-
J.A. Lewis, and G.F. Hatfull Control of directionality in L5 integrase-mediated site-specific recombination J. Mol. Biol. 326 2003 805 821
-
(2003)
J. Mol. Biol.
, vol.326
, pp. 805-821
-
-
Lewis, J.A.1
Hatfull, G.F.2
-
48
-
-
1842505115
-
Crystal structure of the excisionase-DNA complex from bacteriophage lambda
-
M.D. Sam, D. Cascio, R.C. Johnson, and R.T. Clubb Crystal structure of the excisionase-DNA complex from bacteriophage lambda J. Mol. Biol. 338 2004 229 240
-
(2004)
J. Mol. Biol.
, vol.338
, pp. 229-240
-
-
Sam, M.D.1
Cascio, D.2
Johnson, R.C.3
Clubb, R.T.4
-
49
-
-
0346880111
-
Solution structure and stability of the full-length excisionase from bacteriophage HK022
-
V.V. Rogov, C. Lucke, L. Muresanu, H. Wienk, I. Kleinhaus, and K. Werner Solution structure and stability of the full-length excisionase from bacteriophage HK022 Eur. J. Biochem. 270 2003 4846 4858
-
(2003)
Eur. J. Biochem.
, vol.270
, pp. 4846-4858
-
-
Rogov, V.V.1
Lucke, C.2
Muresanu, L.3
Wienk, H.4
Kleinhaus, I.5
Werner, K.6
-
50
-
-
0026700238
-
Characterization of the bacteriophage lambda excisionase (Xis) protein: The C-terminus is required for Xis-integrase cooperativity but not for DNA binding
-
T.E. Numrych, R.I. Gumport, and J.F. Gardner Characterization of the bacteriophage lambda excisionase (Xis) protein: the C-terminus is required for Xis-integrase cooperativity but not for DNA binding EMBO J. 11 1992 3797 3806
-
(1992)
EMBO J.
, vol.11
, pp. 3797-3806
-
-
Numrych, T.E.1
Gumport, R.I.2
Gardner, J.F.3
-
51
-
-
0021676510
-
Determinants of directionality in lambda site-specific recombination
-
W. Bushman, S. Yin, L.L. Thio, and A. Landy Determinants of directionality in lambda site-specific recombination Cell 39 1984 699 706
-
(1984)
Cell
, vol.39
, pp. 699-706
-
-
Bushman, W.1
Yin, S.2
Thio, L.L.3
Landy, A.4
-
52
-
-
0037133558
-
Arm-site binding by lambda-integrase: Solution structure and functional characterization of its amino-terminal domain
-
J.M. Wojciak, S. Sarkar, A. Landy, and R.T. Clubb Arm-site binding by lambda-integrase: solution structure and functional characterization of its amino-terminal domain Proc. Natl Acad Sci. USA 99 2002 3434 3439
-
(2002)
Proc. Natl Acad Sci. USA
, vol.99
, pp. 3434-3439
-
-
Wojciak, J.M.1
Sarkar, S.2
Landy, A.3
Clubb, R.T.4
-
53
-
-
0033614783
-
NMR structure and functional studies of the Mu repressor DNA-binding domain
-
U. Ilangovan, J.M. Wojciak, K.M. Connolly, and R.T. Clubb NMR structure and functional studies of the Mu repressor DNA-binding domain Biochemistry-USA 38 1999 8367 8376
-
(1999)
Biochemistry-USA
, vol.38
, pp. 8367-8376
-
-
Ilangovan, U.1
Wojciak, J.M.2
Connolly, K.M.3
Clubb, R.T.4
-
54
-
-
0028774530
-
A novel class of winged helix-turn-helix protein: The DNA-binding domain of Mu transposase
-
R.T. Clubb, J.G. Omichinski, H. Savilahti, K. Mizuuchi, A.M. Gronenborn, and G.M. Clore A novel class of winged helix-turn-helix protein: the DNA-binding domain of Mu transposase Structure 2 1994 1041 1048
-
(1994)
Structure
, vol.2
, pp. 1041-1048
-
-
Clubb, R.T.1
Omichinski, J.G.2
Savilahti, H.3
Mizuuchi, K.4
Gronenborn, A.M.5
Clore, G.M.6
-
55
-
-
0030061917
-
The wing of the enhancer-binding domain of Mu phage transposase is flexible and is essential for efficient transposition
-
R.T. Clubb, M. Mizuuchi, J.R. Huth, J.G. Omichinski, H. Savilahti, and K. Mizuuchi The wing of the enhancer-binding domain of Mu phage transposase is flexible and is essential for efficient transposition Proc. Natl Acad Sci. USA 93 1996 1146 1150
-
(1996)
Proc. Natl Acad Sci. USA
, vol.93
, pp. 1146-1150
-
-
Clubb, R.T.1
Mizuuchi, M.2
Huth, J.R.3
Omichinski, J.G.4
Savilahti, H.5
Mizuuchi, K.6
-
56
-
-
0024322147
-
Efficient Mu transposition requires interaction of transposase with a DNA sequence at the Mu operator: Implications for regulation
-
M. Mizuuchi, and K. Mizuuchi Efficient Mu transposition requires interaction of transposase with a DNA sequence at the Mu operator: implications for regulation Cell 58 1989 399 408
-
(1989)
Cell
, vol.58
, pp. 399-408
-
-
Mizuuchi, M.1
Mizuuchi, K.2
-
57
-
-
0021942310
-
Interaction of the lambda site-specific recombination protein Xis with attachment site DNA
-
S. Yin, W. Bushman, and A. Landy Interaction of the lambda site-specific recombination protein Xis with attachment site DNA Proc. Natl Acad Sci. USA 82 1985 1040 1044
-
(1985)
Proc. Natl Acad Sci. USA
, vol.82
, pp. 1040-1044
-
-
Yin, S.1
Bushman, W.2
Landy, A.3
-
58
-
-
0028023453
-
Identification of an HP1 phage protein required for site-specific excision
-
D. Esposito, and J.J. Scocca Identification of an HP1 phage protein required for site-specific excision Mol. Microbiol. 13 1994 685 695
-
(1994)
Mol. Microbiol.
, vol.13
, pp. 685-695
-
-
Esposito, D.1
Scocca, J.J.2
-
59
-
-
0035170973
-
The Mu repressor-DNA complex contains an immobilized "wing" within the minor groove
-
J.M. Wojciak, J. Iwahara, and R.T. Clubb The Mu repressor-DNA complex contains an immobilized "wing" within the minor groove Nature Struct. Biol. 8 2001 84 90
-
(2001)
Nature Struct. Biol.
, vol.8
, pp. 84-90
-
-
Wojciak, J.M.1
Iwahara, J.2
Clubb, R.T.3
-
60
-
-
0030004953
-
Interactions between the repressor and the early operator region of bacteriophage Mu
-
P. Rousseau, M. Bétermier, M. Chandler, and R. Alazard Interactions between the repressor and the early operator region of bacteriophage Mu J. Biol. Chem. 271 1996 9739 9745
-
(1996)
J. Biol. Chem.
, vol.271
, pp. 9739-9745
-
-
Rousseau, P.1
Bétermier, M.2
Chandler, M.3
Alazard, R.4
-
61
-
-
0035282917
-
The small DNA binding domain of lambda integrase is a context-sensitive modulator of recombinase functions
-
D. Sarkar, M. Radman-Livaja, and A. Landy The small DNA binding domain of lambda integrase is a context-sensitive modulator of recombinase functions EMBO J. 20 2001 1203 1212
-
(2001)
EMBO J.
, vol.20
, pp. 1203-1212
-
-
Sarkar, D.1
Radman-Livaja, M.2
Landy, A.3
-
62
-
-
0036923454
-
Differential affinity and cooperativity functions of the amino-terminal 70 residues of lambda integrase
-
D. Sarkar, M.A. Azaro, H. Aihara, C.V. Papagiannis, R. Tirumalai, and S.E. Nunes-Duby Differential affinity and cooperativity functions of the amino-terminal 70 residues of lambda integrase J. Mol. Biol. 324 2002 775 789
-
(2002)
J. Mol. Biol.
, vol.324
, pp. 775-789
-
-
Sarkar, D.1
Azaro, M.A.2
Aihara, H.3
Papagiannis, C.V.4
Tirumalai, R.5
Nunes-Duby, S.E.6
-
63
-
-
0015188818
-
Persistence length of DNA from hydrodynamic measurements
-
H. Triebel, K.E. Reinert, and J. Strassburger Persistence length of DNA from hydrodynamic measurements Biopolymers 10 1971 2619 2621
-
(1971)
Biopolymers
, vol.10
, pp. 2619-2621
-
-
Triebel, H.1
Reinert, K.E.2
Strassburger, J.3
-
64
-
-
0032575758
-
Defining the structural and functional roles of the carboxyl region of the bacteriophage lambda excisionase (Xis) protein
-
Z. Wu, R.I. Gumport, and J.F. Gardner Defining the structural and functional roles of the carboxyl region of the bacteriophage lambda excisionase (Xis) protein J. Mol. Biol. 281 1998 651 661
-
(1998)
J. Mol. Biol.
, vol.281
, pp. 651-661
-
-
Wu, Z.1
Gumport, R.I.2
Gardner, J.F.3
-
65
-
-
0021272019
-
Regeneration of insertionally inactivated streptococcal DNA fragments after excision of transposon Tn916 in Escherichia coli: Strategy for targeting and cloning of genes from Gram-positive bacteria
-
C. Gawron-Burke, and D.B. Clewell Regeneration of insertionally inactivated streptococcal DNA fragments after excision of transposon Tn916 in Escherichia coli: strategy for targeting and cloning of genes from Gram-positive bacteria J. Bacteriol. 159 1984 214 221
-
(1984)
J. Bacteriol.
, vol.159
, pp. 214-221
-
-
Gawron-Burke, C.1
Clewell, D.B.2
-
67
-
-
0031849661
-
Site-specific DNA binding using a variation of the double stranded RNA binding motif
-
K.M. Connolly, J.M. Wojciak, and R.T. Clubb Site-specific DNA binding using a variation of the double stranded RNA binding motif Nature Struct. Biol. 5 1998 546 550
-
(1998)
Nature Struct. Biol.
, vol.5
, pp. 546-550
-
-
Connolly, K.M.1
Wojciak, J.M.2
Clubb, R.T.3
-
68
-
-
44049117010
-
Improved 3D triple-resonance NMR techniques applied to a 31 kDa protein
-
S. Grzesiek, and A. Bax Improved 3D triple-resonance NMR techniques applied to a 31 kDa protein J. Magn. Reson. 96 1992 432 440
-
(1992)
J. Magn. Reson.
, vol.96
, pp. 432-440
-
-
Grzesiek, S.1
Bax, A.2
-
69
-
-
43949167657
-
HNCACB, a high-sensitivity 3D NMR experiment to correlate amide-proton and nitrogen resonances with the alpha-carbon and beta-carbon resonances in proteins
-
M. Wittekind, and L. Mueller HNCACB, a high-sensitivity 3D NMR experiment to correlate amide-proton and nitrogen resonances with the alpha-carbon and beta-carbon resonances in proteins J. Magn. Reson. 101 1993 201 205
-
(1993)
J. Magn. Reson.
, vol.101
, pp. 201-205
-
-
Wittekind, M.1
Mueller, L.2
-
70
-
-
9444245493
-
Correlating backbone amide and side-chain resonances in larger proteins by multiple relayed triple resonance NMR
-
S. Grzesiek, and A. Bax Correlating backbone amide and side-chain resonances in larger proteins by multiple relayed triple resonance NMR J. Am. Chem. Soc. 114 1992 6291 6293
-
(1992)
J. Am. Chem. Soc.
, vol.114
, pp. 6291-6293
-
-
Grzesiek, S.1
Bax, A.2
-
71
-
-
43949175202
-
Correlation of backbone amide and aliphatic side-chain resonances in C-13/N-15-enriched proteins by isotropic mixing of C-13 magnetization
-
S. Grzesiek, J. Anglister, and A. Bax Correlation of backbone amide and aliphatic side-chain resonances in C-13/N-15-enriched proteins by isotropic mixing of C-13 magnetization J. Magn. Reson. ser. B 101 1993 114 119
-
(1993)
J. Magn. Reson. Ser. B
, vol.101
, pp. 114-119
-
-
Grzesiek, S.1
Anglister, J.2
Bax, A.3
-
73
-
-
0026225733
-
13C-labeled protein using constant-time evolution
-
13C-labeled protein using constant-time evolution J. Biomol. NMR 1 1991 299 304
-
(1991)
J. Biomol. NMR
, vol.1
, pp. 299-304
-
-
Ikura, I.1
Kay, L.E.2
Bax, A.3
-
75
-
-
12044259775
-
Quantitative J correlation - A new approach for measuring homonuclear 3-bond J(H(N)H(Alpha)) coupling constants in N-15-enriched proteins
-
G.W. Vuister, and A. Bax Quantitative J correlation - a new approach for measuring homonuclear 3-bond J(H(N)H(Alpha)) coupling constants in N-15-enriched proteins J. Am. Chem. Soc. 115 1993 7772 7777
-
(1993)
J. Am. Chem. Soc.
, vol.115
, pp. 7772-7777
-
-
Vuister, G.W.1
Bax, A.2
-
76
-
-
0001654819
-
An alternative 3D-NMR technique for correlating backbone N-15 with side-chain H-beta-resonances in larger proteins
-
S.J. Archer, M. Ikura, D.A. Torchia, and A. Bax An alternative 3D-NMR technique for correlating backbone N-15 with side-chain H-beta-resonances in larger proteins J. Magn. Reson. 95 1991 636 641
-
(1991)
J. Magn. Reson.
, vol.95
, pp. 636-641
-
-
Archer, S.J.1
Ikura, M.2
Torchia, D.A.3
Bax, A.4
-
77
-
-
0026159281
-
Stereospecific assignment of beta-methylene protons in larger proteins using 3D 15N-separated Hartman-Hahn and C13-separated rotating frame Overhauser spectroscopy
-
G.M. Clore, A. Bax, and G.M. Gronenborn Stereospecific assignment of beta-methylene protons in larger proteins using 3D 15N-separated Hartman-Hahn and C13-separated rotating frame Overhauser spectroscopy J. Biomol. NMR 1 1991 13 22
-
(1991)
J. Biomol. NMR
, vol.1
, pp. 13-22
-
-
Clore, G.M.1
Bax, A.2
Gronenborn, G.M.3
-
78
-
-
0000470905
-
Heteronuclear three-dimensional NMR spectroscopy. A strategy for the simplification of homonuclear two-dimensional NMR spectra
-
S.W. Fesik, and E.R.P. Zuiderweg Heteronuclear three-dimensional NMR spectroscopy. A strategy for the simplification of homonuclear two-dimensional NMR spectra J. Magn. Reson. 78 1988 588 593
-
(1988)
J. Magn. Reson.
, vol.78
, pp. 588-593
-
-
Fesik, S.W.1
Zuiderweg, E.R.P.2
-
79
-
-
0013498057
-
Increased resolution and improved spectral quality in 4-dimensional C-13/C-13-separated HMQC-NOESY-HMQC spectra using pulsed field gradients
-
G.W. Vuister, G.M. Clore, A.M. Gronenborn, R. Powers, D.S. Garrett, R. Tschudin, and A. Bax Increased resolution and improved spectral quality in 4-dimensional C-13/C-13-separated HMQC-NOESY-HMQC spectra using pulsed field gradients J. Magn. Reson. ser. B 101 1993 210 213
-
(1993)
J. Magn. Reson. Ser. B
, vol.101
, pp. 210-213
-
-
Vuister, G.W.1
Clore, G.M.2
Gronenborn, A.M.3
Powers, R.4
Garrett, D.S.5
Tschudin, R.6
Bax, A.7
-
80
-
-
0026951903
-
Gradient-tailored excitation for single-quantum NMR spectroscopy of aqueous solutions
-
M. Piotto, V. Saudek, and V. Sklenar Gradient-tailored excitation for single-quantum NMR spectroscopy of aqueous solutions J. Biomol. NMR 2 1992 661 665
-
(1992)
J. Biomol. NMR
, vol.2
, pp. 661-665
-
-
Piotto, M.1
Saudek, V.2
Sklenar, V.3
-
81
-
-
0029400480
-
NMRPipe: A multidimensional spectral processing system based on UNIX pipes
-
F. Delaglio, S. Grzesiek, G.W. Vuister, G. Zhu, J. Pfeifer, and A. Bax NMRPipe: a multidimensional spectral processing system based on UNIX pipes J. Biomol. NMR 6 1995 277 293
-
(1995)
J. Biomol. NMR
, vol.6
, pp. 277-293
-
-
Delaglio, F.1
Grzesiek, S.2
Vuister, G.W.3
Zhu, G.4
Pfeifer, J.5
Bax, A.6
-
82
-
-
0000041361
-
A common sense approach to peak picking in two-, three-, and four-dimensional spectra using automated computer analysis of contour diagrams
-
D.S. Garrett, R. Powers, A.M. Gronenborn, and G.M. Clore A common sense approach to peak picking in two-, three-, and four-dimensional spectra using automated computer analysis of contour diagrams J. Magn. Reson. 95 1991 214 220
-
(1991)
J. Magn. Reson.
, vol.95
, pp. 214-220
-
-
Garrett, D.S.1
Powers, R.2
Gronenborn, A.M.3
Clore, G.M.4
-
84
-
-
0028432974
-
The impact of direct refinement against three-bond HN-CαH coupling constants on protein determination by NMR
-
D.S. Garrett The impact of direct refinement against three-bond HN-CαH coupling constants on protein determination by NMR J. Magn. Reson. ser. B 104 1994 99 103
-
(1994)
J. Magn. Reson. Ser. B
, vol.104
, pp. 99-103
-
-
Garrett, D.S.1
-
85
-
-
0030000912
-
Improving the quality of NMR and crystallographic protein structures by means of a conformational database potential derived from structure databases
-
J. Kuszewski, A.M. Gronenborn, and G.M. Clore Improving the quality of NMR and crystallographic protein structures by means of a conformational database potential derived from structure databases Protein Sci. 5 1996 1067 1080
-
(1996)
Protein Sci.
, vol.5
, pp. 1067-1080
-
-
Kuszewski, J.1
Gronenborn, A.M.2
Clore, G.M.3
-
86
-
-
0031083293
-
Improvements and extensions in the conformational database potential for the refinement of NMR and X-ray structures of proteins and nucleic acids
-
J. Kuszewski, A.M. Gronenborn, and G.M. Clore Improvements and extensions in the conformational database potential for the refinement of NMR and X-ray structures of proteins and nucleic acids J. Magn. Reson. 125 1997 171 177
-
(1997)
J. Magn. Reson.
, vol.125
, pp. 171-177
-
-
Kuszewski, J.1
Gronenborn, A.M.2
Clore, G.M.3
-
87
-
-
0023732144
-
Determination of three-dimensional structures of proteins from interproton distance data by hybrid distance geometry-dynamic simulated annealing
-
M. Nilges, G.M. Clore, and A.M. Gronenborn Determination of three-dimensional structures of proteins from interproton distance data by hybrid distance geometry-dynamic simulated annealing FEBS Letters 229 1988 129 136
-
(1988)
FEBS Letters
, vol.229
, pp. 129-136
-
-
Nilges, M.1
Clore, G.M.2
Gronenborn, A.M.3
-
89
-
-
0030339738
-
AQUA and PROCHECK-NMR: Programs for checking the quality of protein structures solved by NMR
-
R.A. Laskowski, J.A. Rullmannn, M.W. MacArthur, R. Kaptein, and J.M. Thornton AQUA and PROCHECK-NMR: programs for checking the quality of protein structures solved by NMR J. Biomol. NMR 8 1996 477 486
-
(1996)
J. Biomol. NMR
, vol.8
, pp. 477-486
-
-
Laskowski, R.A.1
Rullmannn, J.A.2
MacArthur, M.W.3
Kaptein, R.4
Thornton, J.M.5
-
90
-
-
0029881007
-
MOLMOL: A program for display and analysis of macromolecular structures
-
R. Koradi, M. Billeter, and K. Wuthrich MOLMOL: a program for display and analysis of macromolecular structures J. Mol. Graph. 14 1996 51 55
-
(1996)
J. Mol. Graph.
, vol.14
, pp. 51-55
-
-
Koradi, R.1
Billeter, M.2
Wuthrich, K.3
|