Site-specific DNA binding using a variation of the double stranded RNA binding motif

Nature Structural Biology

Volumn 5, Issue 7 SUPPL., 1998, Pages 546-550

  Connolly, Kevin M ^a   Wojciak, Jonathan M ^a   Clubb, Robert T ^a  

^a UNIVERSITY OF CALIFORNIA   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

DNA; DOUBLE STRANDED RNA; INTEGRASE; RECOMBINASE;

ARTICLE; BACTERIUM CONJUGATION; BINDING SITE; DNA RECOMBINATION; NONHUMAN; NUCLEAR MAGNETIC RESONANCE SPECTROSCOPY; PRIORITY JOURNAL; PROTEIN DNA BINDING; PROTEIN DOMAIN; PROTEIN FOLDING; PROTEIN RNA BINDING; TRANSPOSON;

BINDING SITES; CRYSTALLOGRAPHY, X-RAY; DNA; DNA TRANSPOSABLE ELEMENTS; INTEGRASES; NUCLEAR MAGNETIC RESONANCE, BIOMOLECULAR; PROTEIN STRUCTURE, SECONDARY; RNA, DOUBLE-STRANDED;

ARCHAEA; BACTERIA (MICROORGANISMS);

EID: 0031849661     PISSN: 10728368     EISSN: None     Source Type: Journal    
DOI: 10.1038/799     Document Type: Article

References (39)

1. Scott, J.R. & Churchward, G.Annu. Rev. Microbiol. 49, 367-397 (1995).
2. Clewell, D.U. & Flannagan, S.E. In Bacterial conjugation (ed. Clewell, D.B.) 369-393 (Plenum, New York; 1993).
3. Clewell, D.B., Flannagan, S.E. & Jaworski, D.D. Trends Microbiol. 3, 229-236 (1995).
4. Argos, P. et al. EMBOJ. 5,433-440 (1996).
5. Glasgow, A.C., Hughes. K.T. & Simon, M.L. In Mobile DNA (eds Berg, D.E. SHowe, M.M.) 637-659 (American Society of Microbiology, Washington DC; 1989).
6. Blakely, G. et al. Cell75, 351-361 (1993).
7. Hoess, R.H. & Abremski, K. In Nucleic Acids and Molecular Biology (eds Eckstein, f. & Lilley. D.M.J.) 99-109 (Springer-Verlag, Berlin; 1990).
8. Cox, M.M. In Mobile DNA (eds Berg, D.E. & Howe, M.M.) 661-670 (American Society of Microbiology, Washington DC; 1989).
9. Golden, J.W., Robinson, S.L. & Haselkorn, R. Nature 314,419-423 (1985).
10. Stragier, P., Kunkel, B., Kroos, L. & Losick, R. Science 243, 507-512 (1989).
11. Thompson, J.F. & Landy, A. In Mobile DNA (eds Berg, D.E. & Howe, M.M.) 1-22 (American Society of Microbiology, Washington DC; 1989).
12. Lu, F. & Churchward, G. EMBOJ. 13,1541-1548 (1994).
13. Landy, A. Ann. Rev. Biochem. 58, 913-949 (1989).
14. Gou, F., Gopaul, D.N. & Van Duyne, G.D. Nature 389,40-46 (1997).
15. Hickman. A.B., Waninger, S., Scocca, I.I. & Dyda, F. Cell 89. 227-237 (1997).
16. Kwon, H.J., Tirumalai, R., Landy, A. & Ellenberger, T. Science 276 (1997).
17. Subramanya, H.S. etal. EMBOJ. 16, 5178-5187 (1997).
18. Wilmot, C.M. & Thornton, J.M. 1. Mol. Biol. 203,221-232 (1988).
19. Presta. LG. & Rose, G.D. Science 240,1632-1641 (1988).
20. Ramakrishnan, V. & White, S.W. Nature 358. 768-771 (1992).
21. Burd, CG. & Dreyfuss, G. Science 265, 615-620 (1994).
22. Bycroft, M., Grunert, S., Murzin, A.G., Proctor, M. & St. Johnson, D. EMBO 1. 14,3563-3571 (1995).
23. Kharrat, A., Macias. M.J.. Gibson, T.J., Nilges, M. & Pastore, A. EMBOJ. 14, 3572-3584(1995).
24. Ferrandon. D., Elphick, L., Nüsslein-Volhard, C. & St. Johnson, D. Cell 79, 1221-1231 (1994).
25. Bax, A. & Grzesiek, S.Acct. Cnem. fies. 26, 131-138 (1993).
26. Clore, G.M. & Gronenborn, A.M. Science 252.1390-1399 (1991).
27. Clore, G.M. & Gronenborn, A.M. (eds) NMR of proteins (CRC Press, Ann Arbor, Michigan; 1993).
28. Bax, A. etal. Meth. Ems. 239, 79-106 (1994).
29. Delaglio, F.J. Biomolec. NMR 6, 277-293 (1995).
30. Garrett, D.S., Powers, R., Gronenborn, A.M. & Clore, G.M. 1. Magn. Reson. 95, 214-220(1991).
31. Nilges, M. Prot. Struct. Funct. Genet. 17, 295-309 (1993).
32. Ponder, J.W. & Richards, F.M. J. Mol. Biol. 193, 775-791 (1987).
33. Brünger, A.T. X-PLOK Manual, Version 3.1. (Yale University, New Haven, Connecticut; 1993).
34. Garrett, D.S. 1. Magn. Reson. Series B 104, 99-103 (1994).
35. Kuszewski, J., Qin, J., Gronenborn, A.M. & Clore, G.M. J. Magn. Reson Series B 106,92-96(1996).
36. Kuszewski, J., Gronenborn. A.M. & Clore, G.M. Prot. Sei. 5, 1067-1080 (1996). .
37. Nilges, M., Clore. G.M. & Gronenborn, A.M. ffSS Lett. 229,129-136 (1988).
38. Koradi, R., Billeter, M. & Wuthrich. K. J. Mol. Graphics 14, 51-55 (1996)
39. Kraulis. P.J. J. Appl. Crystallogr. 24, 946-950 (1991).