메뉴 건너뛰기




Volumn 81, Issue 5, 2003, Pages 468-480

Identification and characterization of over 100 mitochondrial ribosomal protein pseudogenes in the human genome

Author keywords

Bioinformatics; Evolution; Mitochondrial ribosomal protein; MRP; Pseudogene

Indexed keywords

MESSENGER RNA; MITOCHONDRIAL PROTEIN; RIBOSOME PROTEIN;

EID: 0037404108     PISSN: 08887543     EISSN: None     Source Type: Journal    
DOI: 10.1016/S0888-7543(03)00004-1     Document Type: Article
Times cited : (26)

References (47)
  • 2
    • 0032008126 scopus 로고    scopus 로고
    • Mitochondrial ribosomal proteins (MRPs) of yeast
    • Graack H.R., Wittmann-Liebold B. Mitochondrial ribosomal proteins (MRPs) of yeast. Biochem. J. 329:1998;433-448.
    • (1998) Biochem. J. , vol.329 , pp. 433-448
    • Graack, H.R.1    Wittmann-Liebold, B.2
  • 3
    • 0032567490 scopus 로고    scopus 로고
    • Mammalian mitochondrial ribosomal proteins: N-terminal amino acid sequencing, characterization, and identification of corresponding gene sequences
    • Goldschmidt-Reisin S., Kitakawa M., Herfurth E., Wittmann-Liebold B., Grohmann L., Graack H.R. Mammalian mitochondrial ribosomal proteins N-terminal amino acid sequencing, characterization, and identification of corresponding gene sequences . J. Biol. Chem. 273:1998;34828-34836.
    • (1998) J. Biol. Chem. , vol.273 , pp. 34828-34836
    • Goldschmidt-Reisin, S.1    Kitakawa, M.2    Herfurth, E.3    Wittmann-Liebold, B.4    Grohmann, L.5    Graack, H.R.6
  • 4
    • 0037029122 scopus 로고    scopus 로고
    • Evolution of a protein-rich mitochondrial ribosome: Implications for human genetic disease
    • O'Brien T.W. Evolution of a protein-rich mitochondrial ribosome implications for human genetic disease . Gene. 286:2002;73-79.
    • (2002) Gene , vol.286 , pp. 73-79
    • O'Brien, T.W.1
  • 5
    • 0035380711 scopus 로고    scopus 로고
    • The small subunit of the mammalian mitochondrial ribosome: Identification of the full complement of ribosomal proteins present
    • Cavdar Koc E., Burkhart W., Blackburn K., Moseley A., Spremulli L.L. The small subunit of the mammalian mitochondrial ribosome identification of the full complement of ribosomal proteins present . J. Biol. Chem. 276:2001;19363-19374.
    • (2001) J. Biol. Chem. , vol.276 , pp. 19363-19374
    • Cavdar Koc, E.1    Burkhart, W.2    Blackburn, K.3    Moseley, A.4    Spremulli, L.L.5
  • 6
    • 0035941287 scopus 로고    scopus 로고
    • The large subunit of the mammalian mitochondrial ribosome: Analysis of the complement of ribosomal proteins present
    • Koc E.C., Burkhart W., Blackburn K., Moyer M.B., Schlatzer D.M., Moseley A., et al. The large subunit of the mammalian mitochondrial ribosome analysis of the complement of ribosomal proteins present . J. Biol. Chem. 276:2001;43958-43969.
    • (2001) J. Biol. Chem. , vol.276 , pp. 43958-43969
    • Koc, E.C.1    Burkhart, W.2    Blackburn, K.3    Moyer, M.B.4    Schlatzer, D.M.5    Moseley, A.6
  • 7
    • 0035106250 scopus 로고    scopus 로고
    • Identification of four proteins from the small subunit of the mammalian mitochondrial ribosome using a proteomics approach
    • Koc E.C., Burkhart W., Blackburn K., Koc H., Moseley A., Spremulli L.L. Identification of four proteins from the small subunit of the mammalian mitochondrial ribosome using a proteomics approach. Protein Sci. 10:2001;471-481.
    • (2001) Protein Sci. , vol.10 , pp. 471-481
    • Koc, E.C.1    Burkhart, W.2    Blackburn, K.3    Koc, H.4    Moseley, A.5    Spremulli, L.L.6
  • 8
    • 0035980117 scopus 로고    scopus 로고
    • Proteomic analysis of the mammalian mitochondrial ribosome: Identification of protein components in the 28 S small subunit
    • Suzuki T., Terasaki M., Takemoto-Hori C., Hanada T., Ueda T., Wada A., et al. Proteomic analysis of the mammalian mitochondrial ribosome identification of protein components in the 28 S small subunit . J. Biol. Chem. 276:2001;33181-33195.
    • (2001) J. Biol. Chem. , vol.276 , pp. 33181-33195
    • Suzuki, T.1    Terasaki, M.2    Takemoto-Hori, C.3    Hanada, T.4    Ueda, T.5    Wada, A.6
  • 9
    • 0022837276 scopus 로고
    • Evolution of proteins in mammalian cytoplasmic and mitochondrial ribosomes
    • Pietromonaco S.F., Hessler R.A., O'Brien T.W. Evolution of proteins in mammalian cytoplasmic and mitochondrial ribosomes. J. Mol. Evol. 24:1986;110-117.
    • (1986) J. Mol. Evol. , vol.24 , pp. 110-117
    • Pietromonaco, S.F.1    Hessler, R.A.2    O'Brien, T.W.3
  • 10
    • 0035416644 scopus 로고    scopus 로고
    • The human mitochondrial ribosomal protein genes: Mapping of 54 genes to the chromosomes and implications for human disorders
    • Kenmochi N., Suzuki T., Uechi T., Magoori M., Kuniba M., Higa S., et al. The human mitochondrial ribosomal protein genes mapping of 54 genes to the chromosomes and implications for human disorders . Genomics. 77:2001;65-70.
    • (2001) Genomics , vol.77 , pp. 65-70
    • Kenmochi, N.1    Suzuki, T.2    Uechi, T.3    Magoori, M.4    Kuniba, M.5    Higa, S.6
  • 12
    • 0025786898 scopus 로고
    • Bovine mitochondrial ribosomes possess a high affinity binding site for guanine nucleotides
    • Denslow N.D., Anders J.C., O'Brien T.W. Bovine mitochondrial ribosomes possess a high affinity binding site for guanine nucleotides. J. Biol. Chem. 266:1991;9586-9590.
    • (1991) J. Biol. Chem. , vol.266 , pp. 9586-9590
    • Denslow, N.D.1    Anders, J.C.2    O'Brien, T.W.3
  • 13
    • 0033556151 scopus 로고    scopus 로고
    • Structure-function analysis of an evolutionarily conserved protein, DAP3, which mediates TNF-alpha- and Fas-induced cell death
    • Kissil J.L., Cohen O., Raveh T., Kimchi A. Structure-function analysis of an evolutionarily conserved protein, DAP3, which mediates TNF-alpha- and Fas-induced cell death. EMBO J. 18:1999;353-362.
    • (1999) EMBO J. , vol.18 , pp. 353-362
    • Kissil, J.L.1    Cohen, O.2    Raveh, T.3    Kimchi, A.4
  • 14
    • 0035831128 scopus 로고    scopus 로고
    • A new face on apoptosis: Death-associated protein 3 and PDCD9 are mitochondrial ribosomal proteins
    • Cavdar Koc E., Ranasinghe A., Burkhart W., Blackburn K., Koc H., Moseley A., et al. A new face on apoptosis death-associated protein 3 and PDCD9 are mitochondrial ribosomal proteins . FEBS Lett. 492:2001;166-170.
    • (2001) FEBS Lett. , vol.492 , pp. 166-170
    • Cavdar Koc, E.1    Ranasinghe, A.2    Burkhart, W.3    Blackburn, K.4    Koc, H.5    Moseley, A.6
  • 15
    • 0029402642 scopus 로고
    • Structure and evolution of mammalian ribosomal proteins
    • Wool I.G., Chan Y.L., Gluck A. Structure and evolution of mammalian ribosomal proteins. Biochem. Cell Biol. 73:1995;933-947.
    • (1995) Biochem. Cell Biol. , vol.73 , pp. 933-947
    • Wool, I.G.1    Chan, Y.L.2    Gluck, A.3
  • 16
    • 0036796620 scopus 로고    scopus 로고
    • Identification and analysis of over 2000 ribosomal protein pseudogenes in the human genome
    • Zhang Z., Harrison P., Gerstein M. Identification and analysis of over 2000 ribosomal protein pseudogenes in the human genome. Genome Res. 12:2002;1466-1482.
    • (2002) Genome Res. , vol.12 , pp. 1466-1482
    • Zhang, Z.1    Harrison, P.2    Gerstein, M.3
  • 18
    • 0022293979 scopus 로고
    • Processed pseudogenes: Characteristics and evolution
    • Vanin E.F. Processed pseudogenes characteristics and evolution . Annu. Rev. Genet. 19:1985;253-272.
    • (1985) Annu. Rev. Genet. , vol.19 , pp. 253-272
    • Vanin, E.F.1
  • 19
    • 0036180936 scopus 로고    scopus 로고
    • Molecular fossils in the human genome: Identification and analysis of the pseudogenes in chromosomes 21 and 22
    • Harrison P.M., Hegyi H., Balasubramanian S., Luscombe N.M., Bertone P., Echols N., et al. Molecular fossils in the human genome identification and analysis of the pseudogenes in chromosomes 21 and 22 . Genome Res. 12:2002;272-280.
    • (2002) Genome Res. , vol.12 , pp. 272-280
    • Harrison, P.M.1    Hegyi, H.2    Balasubramanian, S.3    Luscombe, N.M.4    Bertone, P.5    Echols, N.6
  • 20
    • 0034079713 scopus 로고    scopus 로고
    • Human LINE retrotransposons generate processed pseudogenes
    • Esnault C., Maestre J., Heidmann T. Human LINE retrotransposons generate processed pseudogenes. Nat. Genet. 24:2000;363-367.
    • (2000) Nat. Genet. , vol.24 , pp. 363-367
    • Esnault, C.1    Maestre, J.2    Heidmann, T.3
  • 21
    • 17344370076 scopus 로고    scopus 로고
    • The impact of L1 retrotransposons on the human genome
    • Kazazian H.H. Jr., Moran J.V. The impact of L1 retrotransposons on the human genome. Nat. Genet. 19:1998;19-24.
    • (1998) Nat. Genet. , vol.19 , pp. 19-24
    • Kazazian H.H., Jr.1    Moran, J.V.2
  • 22
    • 0033522145 scopus 로고    scopus 로고
    • Transcriptional analysis of the PTEN/MMAC1 pseudogene, psiPTEN
    • Fujii G.H., Morimoto A.M., Berson A.E., Bolen J.B. Transcriptional analysis of the PTEN/MMAC1 pseudogene, psiPTEN. Oncogene. 18:1999;1765-1769.
    • (1999) Oncogene , vol.18 , pp. 1765-1769
    • Fujii, G.H.1    Morimoto, A.M.2    Berson, A.E.3    Bolen, J.B.4
  • 23
    • 0030455474 scopus 로고    scopus 로고
    • Analysis of the cDNA and encoded protein of the human testis-specific PGK-2 gene
    • McCarrey J.R., Kumari M., Aivaliotis M.J., Wang Z., Zhang P., Marshall F., et al. Analysis of the cDNA and encoded protein of the human testis-specific PGK-2 gene. Dev. Genet. 19:1996;321-332.
    • (1996) Dev. Genet. , vol.19 , pp. 321-332
    • McCarrey, J.R.1    Kumari, M.2    Aivaliotis, M.J.3    Wang, Z.4    Zhang, P.5    Marshall, F.6
  • 24
    • 0033521873 scopus 로고    scopus 로고
    • Cloning, mRNA localization and evolutionary conservation of a human 5-HT7 receptor pseudogene
    • Olsen M.A., Schechter L.E. Cloning, mRNA localization and evolutionary conservation of a human 5-HT7 receptor pseudogene. Gene. 227:1999;63-69.
    • (1999) Gene , vol.227 , pp. 63-69
    • Olsen, M.A.1    Schechter, L.E.2
  • 25
    • 0033524377 scopus 로고    scopus 로고
    • Identification of a novel cytokeratin 19 pseudogene that may interfere with reverse transcriptase-polymerase chain reaction assays used to detect micrometastatic tumor cells
    • Ruud P., Fodstad O., Hovig E. Identification of a novel cytokeratin 19 pseudogene that may interfere with reverse transcriptase-polymerase chain reaction assays used to detect micrometastatic tumor cells. Int. J. Cancer. 80:1999;119-125.
    • (1999) Int. J. Cancer , vol.80 , pp. 119-125
    • Ruud, P.1    Fodstad, O.2    Hovig, E.3
  • 26
    • 0036119504 scopus 로고    scopus 로고
    • Accounting for human polymorphisms predicted to affect protein function
    • Ng P.C., Henikoff S. Accounting for human polymorphisms predicted to affect protein function. Genome Res. 12:2002;436-446.
    • (2002) Genome Res. , vol.12 , pp. 436-446
    • Ng, P.C.1    Henikoff, S.2
  • 28
    • 0035162594 scopus 로고    scopus 로고
    • RefSeq and LocusLink: NCBI gene-centered resources
    • Pruitt K.D., Maglott D.R. RefSeq and LocusLink NCBI gene-centered resources . Nucleic Acids Res. 29:2001;137-140.
    • (2001) Nucleic Acids Res. , vol.29 , pp. 137-140
    • Pruitt, K.D.1    Maglott, D.R.2
  • 29
    • 0023375195 scopus 로고
    • The neighbor-joining method: A new method for reconstructing phylogenetic trees
    • Saitou N., Nei M. The neighbor-joining method a new method for reconstructing phylogenetic trees . Mol. Biol. Evol. 4:1987;406-425.
    • (1987) Mol. Biol. Evol. , vol.4 , pp. 406-425
    • Saitou, N.1    Nei, M.2
  • 31
    • 0019296687 scopus 로고
    • A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences
    • Kimura M. A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences. J. Mol. Evol. 16:1980;111-120.
    • (1980) J. Mol. Evol. , vol.16 , pp. 111-120
    • Kimura, M.1
  • 34
    • 0035208118 scopus 로고    scopus 로고
    • Twin priming: A proposed mechanism for the creation of inversions in L1 retrotransposition
    • Ostertag E.M., Kazazian H.H. Jr. Twin priming a proposed mechanism for the creation of inversions in L1 retrotransposition . Genome Res. 11:2001;2059-2065.
    • (2001) Genome Res. , vol.11 , pp. 2059-2065
    • Ostertag, E.M.1    Kazazian H.H., Jr.2
  • 35
    • 0037047398 scopus 로고    scopus 로고
    • LINE drive: Retrotransposition and genome instability
    • Kazazian H.H. Jr., Goodier J.L. LINE drive retrotransposition and genome instability . Cell. 110:2002;277-280.
    • (2002) Cell , vol.110 , pp. 277-280
    • Kazazian H.H., Jr.1    Goodier, J.L.2
  • 36
    • 0037047396 scopus 로고    scopus 로고
    • Human L1 retrotransposition is associated with genetic instability in vivo
    • Symer D.E., Connelly C., Szak S.T., Caputo E.M., Cost G.J., Parmigiani G., et al. Human L1 retrotransposition is associated with genetic instability in vivo. Cell. 110:2002;327-338.
    • (2002) Cell , vol.110 , pp. 327-338
    • Symer, D.E.1    Connelly, C.2    Szak, S.T.3    Caputo, E.M.4    Cost, G.J.5    Parmigiani, G.6
  • 37
    • 0036122872 scopus 로고    scopus 로고
    • Processed pseudogenes of human endogenous retroviruses generated by LINEs: Their integration, stability, and distribution
    • Pavlicek A., Paces J., Elleder D., Hejnar J. Processed pseudogenes of human endogenous retroviruses generated by LINEs their integration, stability, and distribution . Genome Res. 12:2002;391-399.
    • (2002) Genome Res. , vol.12 , pp. 391-399
    • Pavlicek, A.1    Paces, J.2    Elleder, D.3    Hejnar, J.4
  • 38
    • 0342858851 scopus 로고    scopus 로고
    • Nature and structure of human genes that generate retropseudogenes
    • Goncalves I., Duret L., Mouchiroud D. Nature and structure of human genes that generate retropseudogenes. Genome Res. 10:2000;672-678.
    • (2000) Genome Res. , vol.10 , pp. 672-678
    • Goncalves, I.1    Duret, L.2    Mouchiroud, D.3
  • 40
    • 0001514262 scopus 로고
    • Statistics of local complexity in amino acid sequences and sequence databases
    • Wootton J.C., Federhen S. Statistics of local complexity in amino acid sequences and sequence databases. Comput. Chem. 17:1993;149-163.
    • (1993) Comput. Chem. , vol.17 , pp. 149-163
    • Wootton, J.C.1    Federhen, S.2
  • 41
    • 0019887799 scopus 로고
    • Identification of common molecular subsequences
    • Smith T.F., Waterman M.S. Identification of common molecular subsequences. J. Mol. Biol. 147:1981;195-197.
    • (1981) J. Mol. Biol. , vol.147 , pp. 195-197
    • Smith, T.F.1    Waterman, M.S.2
  • 42
    • 0031573415 scopus 로고    scopus 로고
    • Comparison of DNA sequences with protein sequences
    • Pearson W.R. Comparison of DNA sequences with protein sequences. Genomics. 46:1997;24-36.
    • (1997) Genomics , vol.46 , pp. 24-36
    • Pearson, W.R.1
  • 43
    • 0027249595 scopus 로고
    • DbEST - Database for "expressed sequence tags"
    • Boguski M.S., Lowe T.M., Tolstoshev C.M. dbEST - Database for "expressed sequence tags" Nat. Genet. 4:1993;332-333.
    • (1993) Nat. Genet. , vol.4 , pp. 332-333
    • Boguski, M.S.1    Lowe, T.M.2    Tolstoshev, C.M.3
  • 44
    • 0027968068 scopus 로고
    • CLUSTAL W: Improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice
    • Thompson J.D., Higgins D.G., Gibson T.J. CLUSTAL W improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice . Nucleic Acids Res. 22:1994;4673-4680.
    • (1994) Nucleic Acids Res. , vol.22 , pp. 4673-4680
    • Thompson, J.D.1    Higgins, D.G.2    Gibson, T.J.3
  • 45
    • 0024297354 scopus 로고
    • Multiple sequence alignment with hierarchical clustering
    • Corpet F. Multiple sequence alignment with hierarchical clustering. Nucleic Acids Res. 16:1988;10881-10890.
    • (1988) Nucleic Acids Res. , vol.16 , pp. 10881-10890
    • Corpet, F.1
  • 46
    • 0036139211 scopus 로고    scopus 로고
    • MEGA2: Molecular evolutionary genetics analysis software
    • Kumar S., Tamura K., Jakobsen I.B., Nei M. MEGA2 molecular evolutionary genetics analysis software . Bioinformatics. 17:2001;1244-1245.
    • (2001) Bioinformatics , vol.17 , pp. 1244-1245
    • Kumar, S.1    Tamura, K.2    Jakobsen, I.B.3    Nei, M.4
  • 47
    • 85031190123 scopus 로고    scopus 로고
    • Li, W.-H. (1997). "Molecular Evolution"
    • Li, W.-H. (1997). "Molecular Evolution"


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.