A map of 75 human ribosomal protein genes

Genome Research

Volumn 8, Issue 5, 1998, Pages 509-523

  Kenmochi, Naoya ^a,c   Kawaguchi, Tomoko ^a   Rozen, Steve ^a,b   Davis, Elizabeth ^a   Goodman, Nathan ^b   Hudson, Thomas J ^b   Tanaka, Tatsuo ^c   Page, David C ^a,b  

^a HOWARD HUGHES MEDICAL INSTITUTE   (United States)

^b WHITEHEAD INSTITUTE FOR BIOMEDICAL RESEARCH   (United States)

^c UNIVERSITY OF THE RYUKYUS   (Japan)

Author keywords

[No Author keywords available]

Indexed keywords

RIBOSOME PROTEIN;

ARTICLE; AUTOSOME; CHROMOSOME 19; EXON; GENE MAPPING; HUMAN; HYBRID CELL; INTRON; POLYMERASE CHAIN REACTION; PRIORITY JOURNAL; PSEUDOGENE; RODENT; SEQUENCE HOMOLOGY; SEQUENCE TAGGED SITE; SEX CHROMOSOME; YEAST ARTIFICIAL CHROMOSOME;

RODENTIA;

EID: 0031803462     PISSN: 10889051     EISSN: None     Source Type: Journal    
DOI: 10.1101/gr.8.5.509     Document Type: Article

References (71)

1. Adams, S.M., N.R. Helps, M.G. Sharp, W.J. Brammar, R.A. Walker, and J.M. Varley. 1992. Isolation and characterization of a novel gene with differential expression in benign and malignant human breast tumours. Hum. Mol. Genet. 1: 91-96.
2. Allanson, J.E. 1987. Noonan syndrome. J. Med. Genet. 24: 9-13.
3. Andersson, S., S. Saebøe-Larssen, A. Lambertsson, J. Merriam, and M. Jacobs-Lorena. 1994. A Drosophila third chromosome Minute locus encodes a ribosomal protein. Genetics 137: 513-520.
4. Annilo, T., M. Laan, J. Stahl, and A. Metspalu. 1995. The human ribosomal protein S7-encoding gene: Isolation, structure and localization in 2p25. Gene 165: 297-302.
5. Antoine, M. and M. Fried. 1992. The organization of the intron-containing human S6 ribosomal protein (rpS6) gene and determination of its location at chromosome 9p21. Hum. Mol. Genet. 1: 565-570.
6. Berry, R., T.J. Stevens, N.A. Walter, A.S. Wilcox, T. Rubano, J.A. Hopkins, J. Weber, R. Goold, M.B. Soares et al. 1995. Gene-based sequence-tagged-sites (STSs) as the basis for a human gene map. Nature Genet. 10: 415-423.
7. Chumakov, I.M., P. Rigault, I. Le Gall, C. Ballanné-Chantelot, A. Billault, S. Guillou, P. Soularue, G. Guasconi, E. Poullier et al. 1995. A YAC contig map of the human genome. Nature 377: S175-S298.
8. Colombo, P., M. Read, and M. Fried. 1996. The human L35a ribosomal protein (RPL35A) gene is located at chromosome band 3q29-qter. Genomics 32: 148-150.
9. Cramton, S.E. and F.A. Laski. 1994. string of pearls encodes Drosophila ribosomal protein S2, has Minute-like characteristics, and is required during oogenesis. Genetics 137: 1039-1048.
10. Davies, B. and M. Fried. 1993. The structure of the human intron-containing S8 ribosomal protein gene and determination of its chromosomal location at 1p32-p34.1. Genomics 15: 68-75.
11. _. 1995. The L19 ribosomal protein gene (RPL19): Gene organization, chromosomal mapping, and novel promoter region. Genomics 25: 372-380.
12. Davies, B., S. Feo, E. Heard, and M. Fried. 1989. A strategy to detect and isolate an intron-containing gene in the presence of multiple processed pseudogenes. Proc. Natl. Acad. Sci. 86: 6691-6695.
13. Drwinga, H.L., L.H. Toji, C.H. Kim, A.E. Greene, and R.A. Mulivor. 1993. NIGMS human/rodent somatic cell hybrid mapping panels 1 and 2. Genomics 16: 311-314.
14. Dudov, K.P. and R.P. Perry. 1984. The gene family encoding the mouse ribosomal protein L32 contains a uniquely expressed intron-containing gene and an unmutated processed gene. Cell 37: 457-468.
15. Fan, W., M. Christensen, E. Eichler, X. Zhang, and G. Lennon. 1997. Cloning, sequencing, gene organization, and localization of the human ribosomal protein RPL23A gene. Genomics 46: 234-239.
16. Feo, S., B. Davies, and M. Fried. 1992. The mapping of seven intron-containing ribosomal protein genes shows they are unlinked in the human genome. Genomics 13: 201-207.
17. Ferguson-Smith, M.A. 1965. Karyotype-phenotype correlations in gonadal dysgenesis and their bearing on the pathogenesis of malformations. J. Med. Genet. 2: 142-155.
18. Fisher, E.M., P. Beer-Romero, L.G. Brown, A. Ridley, J.A. McNeil, J.B. Lawrence, H.F. Willard, F.R. Bieber, and D.C. Page. 1990. Homologous ribosomal protein genes on the human X and Y chromosomes: Escape from X inactivation and possible implications for Turner syndrome. Cell 63: 1205-1218.
19. FlyBase. 1997. FlyBase: A Drosophila database. Nucleic Acids Res. 25: 63-66.
20. Ford, C.E., O.J. Miller, P.E. Polani, J.C. de Almeida, and J.H. Briggs. 1959. A sex-chromosome anomaly in a case of gonadal dysgenesis (Turner's syndrome). Lancet 1: 711-713.
21. Garcia-Barcelo, M., P.T.W. Law, S.K.W. Tsui, K.P. Fung, C.Y. Lee, and M.M.Y. Waye. 1997. Mapping of the human ribosomal large subunit protein gene RPL29 to human chromosome 3q29-qter. Genomics 46: 148-151.
22. Geerkens, C., W. Just, K.R. Held, and W. Vogel. 1996. Ullrich-Turner syndrome is not caused by haploinsufficiency of RPS4X. Hum. Genet. 97: 39-44.
23. Hariharan, N., D.E. Kelley, and R.P. Perry. 1989. Equipotent mouse ribosomal protein promoters have a similar architecture that includes internal sequence elements. Genes & Dev. 3: 1789-1800.
24. Hart, K., T. Klein, and M. Wilcox. 1993. A Minute encoding a ribosomal protein enhances wing morphogenesis mutants. Mech. Dev. 43: 101-110.
25. Henderson, A.S., D. Warburton, and K.C. Atwood. 1973. Ribosomal DNA connectives between human acrocentric chromosomes. Nature 245: 95-97.
26. Hudson, T.J., L.D. Stein, S.S. Gerety, J. Ma, A.B. Castle, J. Silva, D.K. Slonim, R. Baptista, L. Kruglyak et al. 1995. An STS-based map of the human genome. Science 270: 1945-1954.
27. Imai, T., K. Sudo, and T. Miwa. 1994. Assignment of the human ribosomal protein S25 gene (RPS25) to chromosome 11q23.3 by sequence analysis of the marker D11S456. Genomics 20: 142-143.
28. Jamieson, C.R., I. van der Burgt, A.F. Brady, M. van Reen, M.M. Elsawi, F. Hol, S. Jeffery, M.A. Patton, and E. Mariman. 1994. Mapping a gene for Noonan syndrome to the long arm of chromosome 12. Nature Genet. 8: 357-360.
29. Jones, A.M., R. Marzella, M. Rocchi, and J.E. Hewitt. 1997. Mapping of the human ribosomal small subunit protein gene RPS24 to the chromosome 10q22-q23 boundary. Genomics 39: 121-122.
30. Just, W., C. Geerkens, K.R. Held, and W. Vogel. 1992. Expression of RPS4X in fibroblasts from patients with structural aberrations of the X chromosome. Hum. Genet. 89: 240-242.
31. Kas, K., E. Schoenmakers, W. van de Ven, G. Weber, M. Nordenskjold, L. Michiels, J. Merregaert, and C. Larsson. 1993. Assignment of the human FAU gene to a subregion of chromosome 11q13. Genomics 17: 387-392.
32. Kay, M.A. and M. Jacobs-Lorena. 1987. Developmental genetics of ribosome synthesis in Drosophila. Trends Genet. 3: 347-351.
33. Kim, J., L.S. Chubatsu, A. Admon, J. Stahl, R. Fellous, and S. Linn. 1995. Implication of mammalian ribosomal protein S3 in the processing of DNA damage. J. Biol. Chem. 270: 13620-13629.
34. Kongsuwan, K., Q. Yu, A. Vincent, M.C. Frisardi, M. Rosbash, J.A. Lengyel, and J. Merriam. 1985. A Drosophila Minute gene encodes a ribosomal protein. Nature 317: 555-558.
35. Kuzumaki, T., T. Tanaka, K. Ishikawa, and K. Ogata. 1987. Rat ribosomal protein L35a multigene family: Molecular structure and characterization of three L35a-related pseudogenes. Biochim. Biophys. Acta 909: 99-106.
36. Lippe, B. 1991. Turner Syndrome. Endocrinol. Metab. Clin. of North Am. 20: 121-152.
37. Lomholt, B., S. Frederiksen, J.N. Nielsen, and C. Hallenberg. 1995. Additional assignment of the human 5S rRNA genes to chromosome region 1q31. Cytogenet. Cell Genet. 70: 76-79.
38. Maeda, N., N. Kenmochi, and T. Tanaka. 1993. The complete nucleotide sequence of chicken ribosomal protein L7a gene and the multiple factor binding sites in its 5′-flanking region. Biochimie 75: 785-790.
39. Maidak, B.L., G.J. Olsen, N. Larsen, R. Overbeek, M.J. McCaughey, and C.R. Woese. 1997. The RDP (Ribosomal Database Project). Nucleic Acids Res. 25: 109-111.
40. Mazuruk, K., T.J. Schoen, G.J. Chader, T. Iwata, and I.R. Rodriguez. 1996. Structural organization and chromosomal localization of the human ribosomal protein L9 gene. Biochim. Biophys. Acta 1305: 151-162.
41. Meyuhas, O., D. Avni, and S. Shama. 1996. Translational control of ribosomal protein mRNAs in eukaryotes. In Translational control (ed. J.W.B. Hershey, M.B. Mathews, and N. Sonenberg), pp. 363-388. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY.
42. Morton, N.E. 1991. Parameters of the human genome. Proc. Natl. Acad. Sci. 88: 7474-7476.
43. Mount, S.M. 1982. A catalogue of splice junction sequences. Nucleic Acids Res. 10: 459-472.
44. Nolte, D., G. Taimor, M. Kalff-Suske, and K.H. Seifart. 1996. The human S3a ribosomal protein: Sequence, location and cell-free transcription of the functional gene. Gene 169: 179-185.
45. Nomura, M., R. Gourse, and G. Baughman. 1984. Regulation of the synthesis of ribosomes and ribosomal components. Annu. Rev. Biochem. 53: 75-117.
46. Nucifora, G., C.R. Begy, P. Erickson, H.A. Drabkin, and J.D. Rowley. 1993. The 3;21 translocation in myelodysplasia results in a fusion transcript between the AML1 gene and the gene for EAP, a highly conserved protein associated with the Epstein-Barr virus small RNA EBER 1. Proc. Natl. Acad. Sci. 90: 7784-7788.
47. Oeltjen, J.C., X. Liu, J. Lu, R.C. Allen, D. Muzny, J.W. Belmont, and R.A. Gibbs. 1995. Sixty-nine kilobases of contiguous human genomic sequence containing the alpha-galactosidase A and Bruton's tyrosine kinase loci. Mamm. Genome 6: 334-338.
48. Omoe, K. and A. Endo. 1996. Relationship between the monosomy X phenotype and Y-linked ribosomal protein S4 (Rps4) in several species of mammals: A molecular evolutionary analysis of Rps4 homologs. Genomics 31: 44-50.
49. Polakiewicz, R.D., D.J. Munroe, S.N. Sait, K.T. Tycowski, N.J. Nowak, T.B. Shows, D.E. Housman, and D.C. Page. 1995. Mapping of ribosomal protein S3 and internally nested snoRNA U15A gene to human chromosome 11q13.3-q13.5. Genomics 25: 577-580.
50. Rhoads, D.D., A. Dixit, and D.J. Roufa. 1986. Primary structure of human ribosomal protein S14 and the gene that encodes it. Mol. Cell. Biol. 6: 2774-2783.
51. Saebøe-Larssen, S. and A. Lambertsson. 1996. A novel Drosophila Minute locus encodes ribosomal protein S13. Genetics 143: 877-885.
52. Schmidt, A., M. Hollmann, and U. Schafer. 1996. A newly identified Minute locus, M(2)32D, encodes the ribosomal protein L9 in Drosophila melanogaster. Mol. & Gen. Genet. 251: 381-387.
53. Schuler, G.D., M.S. Boguski, E.A. Stewart, L.D. Stein, G. Gyapay, K. Rice, R.E. White, P. Rodriguez-Tome, A. Aggarwal et al. 1996. A gene map of the human genome. Science 274: 540-546.
54. Schultz, J. 1929. The Minute reaction in the development of Drosophila melanogaster. Genetics 14: 366-419.
55. Sørensen, P.D., B. Lomholt, S. Frederiksen, and N. Tommerup. 1991. Fine mapping of human 5S rRNA genes to chromosome 1q42.11-q42.13. Cytogenet. Cell Genet. 57: 26-29.
56. van den Ouweland, A.M., P. Kioschis, M. Verdijk, F. Tamanini, D. Toniolo, A. Poustka, and B.A. van Oost. 1992. Identification and characterization of a new gene in the human Xq28 region. Hum. Mol. Genet. 1: 269-273.
57. Vollrath, D., S. Foote, A. Hilton, L.G. Brown, P. Beer-Romero, J.S. Bogan, and D.C. Page. 1992. The human Y chromosome: A 43-interval map based on naturally occurring deletions. Science 258: 52-59.
58. Wagner, M. and R.P. Perry. 1985. Characterization of the multigene family encoding the mouse S16 ribosomal protein: Strategy for distinguishing an expressed gene from its processed pseudogene counterparts by an analysis of total genomic DNA. Mol. Cell. Biol. 5: 3560-3576.
59. Walter, M., D. Spillett, P. Thomas, J. Weissenbach, and P. Goodfellow. 1994. A method for constructing radiation hybrid maps of whole genomes. Nature Genet. 7: 22-28.
60. Watanabe, M., A.R. Zinn, D.C. Page, and T. Nishimoto. 1993. Functional equivalence of human X- and Y-encoded isoforms of ribosomal protein S4 consistent with a role in Turner syndrome. Nature Genet. 4: 268-271.
61. Watson, K.L., K.D. Konrad, D.F. Woods, and P.J. Bryant. 1992. Drosophila homolog of the human S6 ribosomal protein is required for tumor suppression in the hematopoietic system. Proc. Natl. Acad. Sci. 89: 11302-11306.
62. Webb, G.C., R.T. Baker, M. Coggan, and P.G. Board. 1994. Localization of the human UBA52 ubiquitin fusion gene to chromosome band 19p13.1-p12. Genomics 19: 567-569.
63. Wilson, D.M.I., W.A. Deutsch, and M.R. Kelley. 1994. Drosophila ribosomal protein S3 contains an activity that cleaves DNA at apurinic/apyrimidinic sites. J. Biol. Chem. 269: 25359-25364.
64. Wool, I.G. 1979. The structure and function of eukaryotic ribosomes. Annu. Rev. Biochem. 48: 719-754.
65. _. 1996. Extraribosomal functions of ribosomal proteins. Trends Biochem. Sci. 21: 164-165.
66. Wool, I.G., Y.L. Chan, and A. Glück. 1996. Mammalian ribosomes: The structure and the evolution of the proteins. In Translational control (ed. J.W.B. Hershey, M.B. Mathews, and N. Sonenberg), pp. 685-732. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY.
67. Worton, R.G., J. Sutherland, J.E. Sylvester, H.F. Willard, S. Bodrug, I. Dube, C. Duff, V. Kean, P.N. Ray et al. 1988. Human ribosomal RNA genes: Orientation of the tandem array and conservation of the 5′ end. Science 239: 64-68.
68. Yacoub, A., L. Augeri, M.R. Kelley, P.W. Doetsch, and W.A. Deutsch. 1996. A Drosophila ribosomal protein contains 8-oxoguanine and abasic site DNA repair activities. EMBO J. 15: 2306-2312.
69. Yon, J., T. Jones, K. Garson, D. Sheer, and M. Fried. 1993. The organization and conservation of the human Surfeit gene cluster and its localization telomeric to the c-abl and can proto-oncogenes at chromosome band 9q34.1. Hum. Mol. Genet. 2: 237-240.
70. Zinn, A.R., R.K. Alagappan, L.G. Brown, I. Wool, and D.C. Page. 1994. Structure and function of ribosomal protein S4 genes on the human and mouse sex chromosomes. Mol. Cell. Biol. 14: 2485-2492.
71. Zinn, A.R., D.C. Page, and E.M.C. Fisher. 1993. Turner syndrome: The case of the missing sex chromosome. Trends Genet. 9: 90-93.