메뉴 건너뛰기




Volumn 312, Issue 1-2, 2003, Pages 61-72

The human genome has 49 cytochrome c pseudogenes, including a relic of a primordial gene that still functions in mouse

Author keywords

Bioinformatics; Cytochrome c; Evolution; Genome; Pseudogenes

Indexed keywords

CYTOCHROME C; DNA;

EID: 0141652962     PISSN: 03781119     EISSN: None     Source Type: Journal    
DOI: 10.1016/S0378-1119(03)00579-1     Document Type: Article
Times cited : (44)

References (39)
  • 3
    • 0033957834 scopus 로고    scopus 로고
    • The SWISS-PROT protein sequence database and its supplement TrEMBL in 2000
    • Bairoch A., Apweiler R. The SWISS-PROT protein sequence database and its supplement TrEMBL in 2000. Nucleic Acids Res. 28:2000;45-48.
    • (2000) Nucleic Acids Res. , vol.28 , pp. 45-48
    • Bairoch, A.1    Apweiler, R.2
  • 5
    • 0025219623 scopus 로고
    • Isolation of a Rhodobacter capsulatus mutant that lacks c-type cytochromes and excretes porphyrins
    • Biel S.W., Biel A.J. Isolation of a Rhodobacter capsulatus mutant that lacks c-type cytochromes and excretes porphyrins. J. Bacteriol. 172:1990;1321-1326.
    • (1990) J. Bacteriol. , vol.172 , pp. 1321-1326
    • Biel, S.W.1    Biel, A.J.2
  • 6
    • 0022399830 scopus 로고
    • Helix movements and the reconstruction of the haem pocket during the evolution of the cytochrome c family
    • Chothia C., Lesk A.M. Helix movements and the reconstruction of the haem pocket during the evolution of the cytochrome c family. J. Mol. Biol. 182:1985;151-158.
    • (1985) J. Mol. Biol. , vol.182 , pp. 151-158
    • Chothia, C.1    Lesk, A.M.2
  • 7
    • 0029129017 scopus 로고
    • Isolation of novel human endogenous retrovirus-like elements with foamy virus-related pol sequence
    • Cordonnier A., Casella J.F., Heidmann T. Isolation of novel human endogenous retrovirus-like elements with foamy virus-related pol sequence. J. Virol. 69:1995;5890-5897.
    • (1995) J. Virol. , vol.69 , pp. 5890-5897
    • Cordonnier, A.1    Casella, J.F.2    Heidmann, T.3
  • 9
    • 0024211779 scopus 로고
    • The human somatic cytochrome c gene: Two classes of processed pseudogenes demarcate a period of rapid molecular evolution
    • Evans M.J., Scarpulla R.C. The human somatic cytochrome c gene: two classes of processed pseudogenes demarcate a period of rapid molecular evolution. Proc. Natl. Acad. Sci. USA. 85:1988;9625-9629.
    • (1988) Proc. Natl. Acad. Sci. USA , vol.85 , pp. 9625-9629
    • Evans, M.J.1    Scarpulla, R.C.2
  • 11
    • 0036300794 scopus 로고    scopus 로고
    • A small reservoir of disabled ORFs in the yeast genome and its implications for the dynamics of proteome evolution
    • Harrison P., Kumar A., Lan N., Echols N., Snyder M., Gerstein M. A small reservoir of disabled ORFs in the yeast genome and its implications for the dynamics of proteome evolution. J. Mol. Biol. 316:2002;409-419.
    • (2002) J. Mol. Biol. , vol.316 , pp. 409-419
    • Harrison, P.1    Kumar, A.2    Lan, N.3    Echols, N.4    Snyder, M.5    Gerstein, M.6
  • 13
    • 17344370076 scopus 로고    scopus 로고
    • The impact of L1 retrotransposons on the human genome
    • Kazazian H.H. Jr, Moran J.V. The impact of L1 retrotransposons on the human genome. Nat. Genet. 19:1998;19-24.
    • (1998) Nat. Genet. , vol.19 , pp. 19-24
    • Kazazian H.H., Jr.1    Moran, J.V.2
  • 14
    • 0022878125 scopus 로고
    • Antigenic analysis of testicular cytochromes c using monoclonal antibodies
    • Kim I.C., Nolla H. Antigenic analysis of testicular cytochromes c using monoclonal antibodies. Biochem. Cell Biol. 64:1986;1211-1217.
    • (1986) Biochem. Cell Biol. , vol.64 , pp. 1211-1217
    • Kim, I.C.1    Nolla, H.2
  • 15
    • 0019296687 scopus 로고
    • A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences
    • Kimura M. A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences. J. Mol. Evol. 16:1980;111-120.
    • (1980) J. Mol. Evol. , vol.16 , pp. 111-120
    • Kimura, M.1
  • 16
    • 0031037897 scopus 로고    scopus 로고
    • The release of cytochrome c from mitochondria: A primary site for Bcl-2 regulation of apoptosis
    • Kluck R.M., Bossy-Wetzel E., Green D.R., Newmeyer D.D. The release of cytochrome c from mitochondria: a primary site for Bcl-2 regulation of apoptosis. Science. 275:1997;1132-1136.
    • (1997) Science , vol.275 , pp. 1132-1136
    • Kluck, R.M.1    Bossy-Wetzel, E.2    Green, D.R.3    Newmeyer, D.D.4
  • 17
    • 0036139211 scopus 로고    scopus 로고
    • MEGA2: Molecular evolutionary genetics analysis software
    • Kumar S., Tamura K., Jakobsen I.B., Nei M. MEGA2: molecular evolutionary genetics analysis software. Bioinformatics. 17:2001;1244-1245.
    • (2001) Bioinformatics , vol.17 , pp. 1244-1245
    • Kumar, S.1    Tamura, K.2    Jakobsen, I.B.3    Nei, M.4
  • 19
    • 0003421005 scopus 로고    scopus 로고
    • Sunderland, MA: Sinauer Associates
    • Li W.-H. Molecular Evolution. 1997;Sinauer Associates, Sunderland, MA.
    • (1997) Molecular Evolution
    • Li, W.-H.1
  • 20
    • 0022431848 scopus 로고
    • Characterization of two Drosophila melanogaster cytochrome c genes and their transcripts
    • Limbach K.J., Wu R. Characterization of two Drosophila melanogaster cytochrome c genes and their transcripts. Nucleic Acids Res. 13:1985;631-644.
    • (1985) Nucleic Acids Res. , vol.13 , pp. 631-644
    • Limbach, K.J.1    Wu, R.2
  • 23
    • 0025817077 scopus 로고
    • Cytochrome c: Gene structure, homology and ancestral relationships
    • Mills G.C. Cytochrome c: gene structure, homology and ancestral relationships. J. Theor. Biol. 152:1991;177-190.
    • (1991) J. Theor. Biol. , vol.152 , pp. 177-190
    • Mills, G.C.1
  • 24
    • 0036100124 scopus 로고    scopus 로고
    • Evidence Suggesting That a Fifth of Annotated Caenorhabditis elegans Genes May Be Pseudogenes
    • Mounsey A., Bauer P., Hope I.A. Evidence Suggesting That a Fifth of Annotated Caenorhabditis elegans Genes May Be Pseudogenes. Genome Res. 12:2002;770-775.
    • (2002) Genome Res. , vol.12 , pp. 770-775
    • Mounsey, A.1    Bauer, P.2    Hope, I.A.3
  • 26
    • 0035208118 scopus 로고    scopus 로고
    • Twin priming: A proposed mechanism for the creation of inversions in L1 retrotransposition
    • Ostertag E.M., Kazazian H.H. Jr. Twin priming: a proposed mechanism for the creation of inversions in L1 retrotransposition. Genome Res. 11:2001;2059-2065.
    • (2001) Genome Res. , vol.11 , pp. 2059-2065
    • Ostertag, E.M.1    Kazazian H.H., Jr.2
  • 27
    • 0031573415 scopus 로고    scopus 로고
    • Comparison of DNA sequences with protein sequences
    • Pearson W.R. Comparison of DNA sequences with protein sequences. Genomics. 46:1997;24-36.
    • (1997) Genomics , vol.46 , pp. 24-36
    • Pearson, W.R.1
  • 28
    • 0023375195 scopus 로고
    • The neighbor-joining method: A new method for reconstructing phylogenetic trees
    • Saitou N., Nei M. The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol. Biol. Evol. 4:1987;406-425.
    • (1987) Mol. Biol. Evol. , vol.4 , pp. 406-425
    • Saitou, N.1    Nei, M.2
  • 29
    • 0021683812 scopus 로고
    • Processed pseudogenes for rat cytochrome c are preferentially derived from one of three alternate mRNAs
    • Scarpulla R.C. Processed pseudogenes for rat cytochrome c are preferentially derived from one of three alternate mRNAs. Mol. Cell Biol. 4:1984;2279-2288.
    • (1984) Mol. Cell Biol. , vol.4 , pp. 2279-2288
    • Scarpulla, R.C.1
  • 30
    • 0020058543 scopus 로고
    • Cytochrome c gene-related sequences in mammalian genomes
    • Scarpulla R.C., Agne K.M., Wu R. Cytochrome c gene-related sequences in mammalian genomes. Proc. Natl. Acad. Sci. USA. 79:1982;739-743.
    • (1982) Proc. Natl. Acad. Sci. USA , vol.79 , pp. 739-743
    • Scarpulla, R.C.1    Agne, K.M.2    Wu, R.3
  • 31
    • 0027174559 scopus 로고
    • Identification of a new, abundant superfamily of mammalian LTR- transposons
    • Smit A.F. Identification of a new, abundant superfamily of mammalian LTR- transposons. Nucleic Acids Res. 21:1993;1863-1872.
    • (1993) Nucleic Acids Res. , vol.21 , pp. 1863-1872
    • Smit, A.F.1
  • 32
    • 0032784908 scopus 로고    scopus 로고
    • Interspersed repeats and other mementos of transposable elements in mammalian genomes
    • Smit A.F. Interspersed repeats and other mementos of transposable elements in mammalian genomes. Curr. Opin. Genet. Dev. 9:1999;657-663.
    • (1999) Curr. Opin. Genet. Dev. , vol.9 , pp. 657-663
    • Smit, A.F.1
  • 33
    • 0027968068 scopus 로고
    • CLUSTAL W: Improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice
    • Thompson J.D., Higgins D.G., Gibson T.J. CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res. 22:1994;4673-4680.
    • (1994) Nucleic Acids Res. , vol.22 , pp. 4673-4680
    • Thompson, J.D.1    Higgins, D.G.2    Gibson, T.J.3
  • 34
    • 0022293979 scopus 로고
    • Processed pseudogenes: Characteristics and evolution
    • Vanin E.F. Processed pseudogenes: characteristics and evolution. Annu. Rev. Genet. 19:1985;253-272.
    • (1985) Annu. Rev. Genet. , vol.19 , pp. 253-272
    • Vanin, E.F.1
  • 35
    • 0023918579 scopus 로고
    • Structure and expression of rodent genes encoding the testis-specific cytochrome c. Differences in gene structure and evolution between somatic and testicular variants
    • Virbasius J.V., Scarpulla R.C. Structure and expression of rodent genes encoding the testis-specific cytochrome c. Differences in gene structure and evolution between somatic and testicular variants. J. Biol. Chem. 263:1988;6791-6796.
    • (1988) J. Biol. Chem. , vol.263 , pp. 6791-6796
    • Virbasius, J.V.1    Scarpulla, R.C.2
  • 36
    • 1542563409 scopus 로고    scopus 로고
    • Initial sequencing and comparative analysis of the mouse genome
    • Waterston R.H., Lindblad-Toh K., Birney E., et al. Initial sequencing and comparative analysis of the mouse genome. Nature. 420:2002;520-562.
    • (2002) Nature , vol.420 , pp. 520-562
    • Waterston, R.H.1    Lindblad-Toh, K.2    Birney, E.3
  • 37
    • 0001514262 scopus 로고
    • Statistics of local complexity in amino acid sequences and sequence databases
    • Wootton J.C., Federhen S. Statistics of local complexity in amino acid sequences and sequence databases. Comput. Chem. 17:1993;149-163.
    • (1993) Comput. Chem. , vol.17 , pp. 149-163
    • Wootton, J.C.1    Federhen, S.2
  • 39
    • 0036796620 scopus 로고    scopus 로고
    • Identification and analysis of over 2000 ribosomal protein pseudogenes in the human genome
    • Zhang Z., Harrison P., Gerstein M. Identification and analysis of over 2000 ribosomal protein pseudogenes in the human genome. Genome Res. 12:2002;1466-1482.
    • (2002) Genome Res. , vol.12 , pp. 1466-1482
    • Zhang, Z.1    Harrison, P.2    Gerstein, M.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.