-
1
-
-
0030801002
-
Gapped BLAST and PSI-BLAST: A new generation of protein database search programs
-
Altschul S.F., Madden T.L., Schaffer A.A., Zhang J., Zhang Z., Miller W., Lipman D.J. Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Res. 25:1997;3389-3402.
-
(1997)
Nucleic Acids Res.
, vol.25
, pp. 3389-3402
-
-
Altschul, S.F.1
Madden, T.L.2
Schaffer, A.A.3
Zhang, J.4
Zhang, Z.5
Miller, W.6
Lipman, D.J.7
-
2
-
-
0037047628
-
Recent segmental duplications in the human genome
-
Bailey J.A., Gu Z., Clark R.A., Reinert K., Samonte R.V., Schwartz S., Adams M.D., Myers E.W., Li P.W., Eichler E.E. Recent segmental duplications in the human genome. Science. 297:2002;1003-1007.
-
(2002)
Science
, vol.297
, pp. 1003-1007
-
-
Bailey, J.A.1
Gu, Z.2
Clark, R.A.3
Reinert, K.4
Samonte, R.V.5
Schwartz, S.6
Adams, M.D.7
Myers, E.W.8
Li, P.W.9
Eichler, E.E.10
-
3
-
-
0033957834
-
The SWISS-PROT protein sequence database and its supplement TrEMBL in 2000
-
Bairoch A., Apweiler R. The SWISS-PROT protein sequence database and its supplement TrEMBL in 2000. Nucleic Acids Res. 28:2000;45-48.
-
(2000)
Nucleic Acids Res.
, vol.28
, pp. 45-48
-
-
Bairoch, A.1
Apweiler, R.2
-
5
-
-
0025219623
-
Isolation of a Rhodobacter capsulatus mutant that lacks c-type cytochromes and excretes porphyrins
-
Biel S.W., Biel A.J. Isolation of a Rhodobacter capsulatus mutant that lacks c-type cytochromes and excretes porphyrins. J. Bacteriol. 172:1990;1321-1326.
-
(1990)
J. Bacteriol.
, vol.172
, pp. 1321-1326
-
-
Biel, S.W.1
Biel, A.J.2
-
6
-
-
0022399830
-
Helix movements and the reconstruction of the haem pocket during the evolution of the cytochrome c family
-
Chothia C., Lesk A.M. Helix movements and the reconstruction of the haem pocket during the evolution of the cytochrome c family. J. Mol. Biol. 182:1985;151-158.
-
(1985)
J. Mol. Biol.
, vol.182
, pp. 151-158
-
-
Chothia, C.1
Lesk, A.M.2
-
7
-
-
0029129017
-
Isolation of novel human endogenous retrovirus-like elements with foamy virus-related pol sequence
-
Cordonnier A., Casella J.F., Heidmann T. Isolation of novel human endogenous retrovirus-like elements with foamy virus-related pol sequence. J. Virol. 69:1995;5890-5897.
-
(1995)
J. Virol.
, vol.69
, pp. 5890-5897
-
-
Cordonnier, A.1
Casella, J.F.2
Heidmann, T.3
-
9
-
-
0024211779
-
The human somatic cytochrome c gene: Two classes of processed pseudogenes demarcate a period of rapid molecular evolution
-
Evans M.J., Scarpulla R.C. The human somatic cytochrome c gene: two classes of processed pseudogenes demarcate a period of rapid molecular evolution. Proc. Natl. Acad. Sci. USA. 85:1988;9625-9629.
-
(1988)
Proc. Natl. Acad. Sci. USA
, vol.85
, pp. 9625-9629
-
-
Evans, M.J.1
Scarpulla, R.C.2
-
11
-
-
0036300794
-
A small reservoir of disabled ORFs in the yeast genome and its implications for the dynamics of proteome evolution
-
Harrison P., Kumar A., Lan N., Echols N., Snyder M., Gerstein M. A small reservoir of disabled ORFs in the yeast genome and its implications for the dynamics of proteome evolution. J. Mol. Biol. 316:2002;409-419.
-
(2002)
J. Mol. Biol.
, vol.316
, pp. 409-419
-
-
Harrison, P.1
Kumar, A.2
Lan, N.3
Echols, N.4
Snyder, M.5
Gerstein, M.6
-
12
-
-
0036180936
-
Molecular fossils in the human genome: Identification and analysis of the pseudogenes in chromosomes 21 and 22
-
Harrison P.M., Hegyi H., Balasubramanian S., Luscombe N.M., Bertone P., Echols N., Johnson T., Gerstein M. Molecular fossils in the human genome: identification and analysis of the pseudogenes in chromosomes 21 and 22. Genome Res. 12:2002;272-280.
-
(2002)
Genome Res.
, vol.12
, pp. 272-280
-
-
Harrison, P.M.1
Hegyi, H.2
Balasubramanian, S.3
Luscombe, N.M.4
Bertone, P.5
Echols, N.6
Johnson, T.7
Gerstein, M.8
-
13
-
-
17344370076
-
The impact of L1 retrotransposons on the human genome
-
Kazazian H.H. Jr, Moran J.V. The impact of L1 retrotransposons on the human genome. Nat. Genet. 19:1998;19-24.
-
(1998)
Nat. Genet.
, vol.19
, pp. 19-24
-
-
Kazazian H.H., Jr.1
Moran, J.V.2
-
14
-
-
0022878125
-
Antigenic analysis of testicular cytochromes c using monoclonal antibodies
-
Kim I.C., Nolla H. Antigenic analysis of testicular cytochromes c using monoclonal antibodies. Biochem. Cell Biol. 64:1986;1211-1217.
-
(1986)
Biochem. Cell Biol.
, vol.64
, pp. 1211-1217
-
-
Kim, I.C.1
Nolla, H.2
-
15
-
-
0019296687
-
A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences
-
Kimura M. A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences. J. Mol. Evol. 16:1980;111-120.
-
(1980)
J. Mol. Evol.
, vol.16
, pp. 111-120
-
-
Kimura, M.1
-
16
-
-
0031037897
-
The release of cytochrome c from mitochondria: A primary site for Bcl-2 regulation of apoptosis
-
Kluck R.M., Bossy-Wetzel E., Green D.R., Newmeyer D.D. The release of cytochrome c from mitochondria: a primary site for Bcl-2 regulation of apoptosis. Science. 275:1997;1132-1136.
-
(1997)
Science
, vol.275
, pp. 1132-1136
-
-
Kluck, R.M.1
Bossy-Wetzel, E.2
Green, D.R.3
Newmeyer, D.D.4
-
17
-
-
0036139211
-
MEGA2: Molecular evolutionary genetics analysis software
-
Kumar S., Tamura K., Jakobsen I.B., Nei M. MEGA2: molecular evolutionary genetics analysis software. Bioinformatics. 17:2001;1244-1245.
-
(2001)
Bioinformatics
, vol.17
, pp. 1244-1245
-
-
Kumar, S.1
Tamura, K.2
Jakobsen, I.B.3
Nei, M.4
-
18
-
-
2042437650
-
Initial sequencing and analysis of the human genome
-
Lander E.S., Linton L.M., Birren B., Nusbaum C., Zody M.C., Baldwin J., Devon K., Dewar K., Doyle M., FitzHugh W., et al. Initial sequencing and analysis of the human genome. Nature. 409:2001;860-921.
-
(2001)
Nature
, vol.409
, pp. 860-921
-
-
Lander, E.S.1
Linton, L.M.2
Birren, B.3
Nusbaum, C.4
Zody, M.C.5
Baldwin, J.6
Devon, K.7
Dewar, K.8
Doyle, M.9
FitzHugh, W.10
-
19
-
-
0003421005
-
-
Sunderland, MA: Sinauer Associates
-
Li W.-H. Molecular Evolution. 1997;Sinauer Associates, Sunderland, MA.
-
(1997)
Molecular Evolution
-
-
Li, W.-H.1
-
20
-
-
0022431848
-
Characterization of two Drosophila melanogaster cytochrome c genes and their transcripts
-
Limbach K.J., Wu R. Characterization of two Drosophila melanogaster cytochrome c genes and their transcripts. Nucleic Acids Res. 13:1985;631-644.
-
(1985)
Nucleic Acids Res.
, vol.13
, pp. 631-644
-
-
Limbach, K.J.1
Wu, R.2
-
23
-
-
0025817077
-
Cytochrome c: Gene structure, homology and ancestral relationships
-
Mills G.C. Cytochrome c: gene structure, homology and ancestral relationships. J. Theor. Biol. 152:1991;177-190.
-
(1991)
J. Theor. Biol.
, vol.152
, pp. 177-190
-
-
Mills, G.C.1
-
24
-
-
0036100124
-
Evidence Suggesting That a Fifth of Annotated Caenorhabditis elegans Genes May Be Pseudogenes
-
Mounsey A., Bauer P., Hope I.A. Evidence Suggesting That a Fifth of Annotated Caenorhabditis elegans Genes May Be Pseudogenes. Genome Res. 12:2002;770-775.
-
(2002)
Genome Res.
, vol.12
, pp. 770-775
-
-
Mounsey, A.1
Bauer, P.2
Hope, I.A.3
-
26
-
-
0035208118
-
Twin priming: A proposed mechanism for the creation of inversions in L1 retrotransposition
-
Ostertag E.M., Kazazian H.H. Jr. Twin priming: a proposed mechanism for the creation of inversions in L1 retrotransposition. Genome Res. 11:2001;2059-2065.
-
(2001)
Genome Res.
, vol.11
, pp. 2059-2065
-
-
Ostertag, E.M.1
Kazazian H.H., Jr.2
-
27
-
-
0031573415
-
Comparison of DNA sequences with protein sequences
-
Pearson W.R. Comparison of DNA sequences with protein sequences. Genomics. 46:1997;24-36.
-
(1997)
Genomics
, vol.46
, pp. 24-36
-
-
Pearson, W.R.1
-
28
-
-
0023375195
-
The neighbor-joining method: A new method for reconstructing phylogenetic trees
-
Saitou N., Nei M. The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol. Biol. Evol. 4:1987;406-425.
-
(1987)
Mol. Biol. Evol.
, vol.4
, pp. 406-425
-
-
Saitou, N.1
Nei, M.2
-
29
-
-
0021683812
-
Processed pseudogenes for rat cytochrome c are preferentially derived from one of three alternate mRNAs
-
Scarpulla R.C. Processed pseudogenes for rat cytochrome c are preferentially derived from one of three alternate mRNAs. Mol. Cell Biol. 4:1984;2279-2288.
-
(1984)
Mol. Cell Biol.
, vol.4
, pp. 2279-2288
-
-
Scarpulla, R.C.1
-
31
-
-
0027174559
-
Identification of a new, abundant superfamily of mammalian LTR- transposons
-
Smit A.F. Identification of a new, abundant superfamily of mammalian LTR- transposons. Nucleic Acids Res. 21:1993;1863-1872.
-
(1993)
Nucleic Acids Res.
, vol.21
, pp. 1863-1872
-
-
Smit, A.F.1
-
32
-
-
0032784908
-
Interspersed repeats and other mementos of transposable elements in mammalian genomes
-
Smit A.F. Interspersed repeats and other mementos of transposable elements in mammalian genomes. Curr. Opin. Genet. Dev. 9:1999;657-663.
-
(1999)
Curr. Opin. Genet. Dev.
, vol.9
, pp. 657-663
-
-
Smit, A.F.1
-
33
-
-
0027968068
-
CLUSTAL W: Improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice
-
Thompson J.D., Higgins D.G., Gibson T.J. CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res. 22:1994;4673-4680.
-
(1994)
Nucleic Acids Res.
, vol.22
, pp. 4673-4680
-
-
Thompson, J.D.1
Higgins, D.G.2
Gibson, T.J.3
-
34
-
-
0022293979
-
Processed pseudogenes: Characteristics and evolution
-
Vanin E.F. Processed pseudogenes: characteristics and evolution. Annu. Rev. Genet. 19:1985;253-272.
-
(1985)
Annu. Rev. Genet.
, vol.19
, pp. 253-272
-
-
Vanin, E.F.1
-
35
-
-
0023918579
-
Structure and expression of rodent genes encoding the testis-specific cytochrome c. Differences in gene structure and evolution between somatic and testicular variants
-
Virbasius J.V., Scarpulla R.C. Structure and expression of rodent genes encoding the testis-specific cytochrome c. Differences in gene structure and evolution between somatic and testicular variants. J. Biol. Chem. 263:1988;6791-6796.
-
(1988)
J. Biol. Chem.
, vol.263
, pp. 6791-6796
-
-
Virbasius, J.V.1
Scarpulla, R.C.2
-
36
-
-
1542563409
-
Initial sequencing and comparative analysis of the mouse genome
-
Waterston R.H., Lindblad-Toh K., Birney E., et al. Initial sequencing and comparative analysis of the mouse genome. Nature. 420:2002;520-562.
-
(2002)
Nature
, vol.420
, pp. 520-562
-
-
Waterston, R.H.1
Lindblad-Toh, K.2
Birney, E.3
-
37
-
-
0001514262
-
Statistics of local complexity in amino acid sequences and sequence databases
-
Wootton J.C., Federhen S. Statistics of local complexity in amino acid sequences and sequence databases. Comput. Chem. 17:1993;149-163.
-
(1993)
Comput. Chem.
, vol.17
, pp. 149-163
-
-
Wootton, J.C.1
Federhen, S.2
-
38
-
-
0022500743
-
Evolution of cytochrome c genes and pseudogenes
-
Wu C.I., Li W.H., Shen J.J., Scarpulla R.C., Limbach K.J., Wu R. Evolution of cytochrome c genes and pseudogenes. J. Mol. Evol. 23:1986;61-75.
-
(1986)
J. Mol. Evol.
, vol.23
, pp. 61-75
-
-
Wu, C.I.1
Li, W.H.2
Shen, J.J.3
Scarpulla, R.C.4
Limbach, K.J.5
Wu, R.6
-
39
-
-
0036796620
-
Identification and analysis of over 2000 ribosomal protein pseudogenes in the human genome
-
Zhang Z., Harrison P., Gerstein M. Identification and analysis of over 2000 ribosomal protein pseudogenes in the human genome. Genome Res. 12:2002;1466-1482.
-
(2002)
Genome Res.
, vol.12
, pp. 1466-1482
-
-
Zhang, Z.1
Harrison, P.2
Gerstein, M.3
|