Substrate-induced conformational changes in Escherichia coli taurine/α-ketoglutarate dioxygenase and insight into the oligomeric structure

Biochemistry

Volumn 42, Issue 19, 2003, Pages 5547-5554

  O'Brien, Jessica R ^a   Schuller, David J ^b   Yang, Victoria S ^a   Dillard, Bret D ^a   Lanzilotta, William N ^a  

^a Department of Population Medicine and Diagnostic Sciences   (United States)

^b UNIVERSITY OF GEORGIA   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

CONFORMATIONS; CRYSTALLOGRAPHY; ENZYMES; OLIGOMERS; OPTICAL RESOLVING POWER; SUBSTRATES;

ECOLOGICAL ROLES;

ESCHERICHIA COLI;

2 OXOGLUTARIC ACID; ACETALDEHYDE; ALPHA KETOGLUTARATE DIOXYGENASE; CARBON DIOXIDE; OXYGENASE; SUCCINIC ACID; SULFITE; SULFUR; TAURINE; UNCLASSIFIED DRUG;

ARTICLE; CONFORMATIONAL TRANSITION; CRYSTALLOGRAPHY; ENZYME ACTIVE SITE; ENZYME STRUCTURE; ENZYME SUBSTRATE; ESCHERICHIA COLI; NONHUMAN; PRIORITY JOURNAL; PROTEIN BINDING;

APOENZYMES; CATALYTIC DOMAIN; CRYSTALLOGRAPHY, X-RAY; DIMERIZATION; ESCHERICHIA COLI; IRON; MIXED FUNCTION OXYGENASES; MODELS, MOLECULAR; PROTEIN CONFORMATION; PROTEIN STRUCTURE, QUATERNARY; SUBSTRATE SPECIFICITY; TAURINE;

BACTERIA (MICROORGANISMS); ESCHERICHIA COLI;

EID: 0038290551     PISSN: 00062960     EISSN: None     Source Type: Journal    
DOI: 10.1021/bi0341096     Document Type: Article

References (35)

1. Prescott, A. G., and Philip, J. (1996) Annu. Rev. Plant Physiol Plant Mol. Biol. 47, 245-71.
2. Que, L., Jr., and Ho, R. Y. (1996) Chem. Rev. 96, 2607-24.
3. Myllyharju, J., and Kivirikko, K. I. (1997) EMBO J. 16, 1173-80.
4. Jaakkola, P., Mole, D. R., Tian, Y. M., Wilson, M. I., Gielbert, J., Gaskell, S. J., Kriegsheim, A., Hebestreit, H. F., Mukherji, M., Schofield, C. J., Maxwell, P. H., Pugh, C. W., and Ratcliffe, P. J. (2001) Science 292, 468-72.
5. Epstein, A. C., Gleadle, J. M., McNeill, L. A., Hewitson, K. S., O'Rourke, J., Mole, D. R., Mukherji, M., Metzen, E., Wilson, M. I., Dhanda, A., Tian, Y. M., Masson, N., Hamilton, D. L., Jaakkola, P., Barstead, R., Hodgkin, J., Maxwell, P. H., Pugh, C. W., Schofield, C. J., and Ratcliffe, P. J. (2001) Cell 107, 43-54.
6. Borovok, I., Landman, O., Kreisberg-Zakarin, R., Aharonowitz, Y., and Cohen, G. (1996) Biochemistry 35, 1981-7.
7. Valegard, K., van Scheltinga, A. C., Lloyd, M. D., Hara, T., Ramaswamy, S., Perrakis, A., Thompson, A., Lee, H. J., Baldwin, J. E., Schofield, C. J., Hajdu, J., and Andersson, I. (1998) Nature 394, 805-9.
8. Roach, P. L., Clifton, I. J., Hensgens, C. M., Shibata, N., Schofield, C. J., Hajdu, J., and Baldwin, J. E. (1997) Nature 387, 827-30.
9. Hegg, E. L., and Que, L., Jr. (1997) Eur. J. Biochem. 250, 625-9.
10. Pavel, E. G., Zhou, J., Busby, R. W., Gunsior, M., Townsend, C. A., and Solomon, E. I. (1998) J. Am. Chem. Soc. 120, 743-753.
11. Elkins, J. M., Ryle, M. J., Clifton, I. J., Dunning Hotopp, J. C., Lloyd, J. S., Burzlaff, N. I., Baldwin, J. E., Hausinger, R. P., and Roach, P. L. (2002) Biochemistry 41, 5185-92.
12. Ryle, M. J., Padmakumar, R., and Hausinger, R. P. (1999) Biochemistry 38, 15278-86.
13. Hegg, E. L., Whiting, A. K., Saari, R. E., McCracken, J., Hausinger, R. P., and Que, L., Jr. (1999) Biochemistry 38, 16714-26.
14. Barton, G. J. (1993) Protein Eng. 6, 37-40.
15. Zhou, J., Gunisor, M., Bachmann, B. O., Townsend, C. A., and Solomon, E. I. (1998) J. Am. Chem. Soc. 120, 13539-40.
16. Liu, A., Ho, R. Y., Que, L., Jr., Ryle, M. J., Phinney, B. S., and Hausinger, R. P. (2001) J. Am. Chem. Soc. 123, 5126-7.
17. Eichhorn, E., van der Ploeg, J. R., Kertesz, M. A., and Leisinger, T. (1997) J. Biol. Chem. 272, 23031-6.
18. Clifton, I. J., Hsueh, L. C., Baldwin, J. E., Harlos, K., and Schofield, C. J. (2001) Eur. J. Biochem. 268, 6625-36.
19. Tabor, S. (1990) in Current Protocols in Molecular Biology (Ausubel, F. M., Brent, R., Kingston, R. E., Moore, D. D., Seidman, J. G., Smith, J. A., and Struhl, K., Eds.) p 16.2.1-16.2.11, Green Publishing Associates and Wiley-Interscience, New York.
20. Chan, J. M., Wu, W., Dean, D. R., and Seefeldt, L. C. (2000) Biochemistry 39, 7221-8.
21. Powell, H. R. (1999) Acta Crystallogr. D 55 (Pt 10), 1690-5.
22. Winn, M. D. (2003) J. Synchrotron. Radiat. 10, 23-5.
23. Brunger, A. T., Adams, P. D., Clore, G. M., DeLano, W. L., Gros, P., Grosse-Kunstleve, R. W., Jiang, J. S., Kuszewski, J., Nilges, M., Pannu, N. S., Read, R. J., Rice, L. M., Simonson, T., and Warren, G. L. (1998) Acta Crystallogr. D 54 (Pt 5), 905-21.
24. Jones, T. A., Zou, J. Y., Cowan, S. W., and Kjeldgaard. (1991) Acta Crystallogr. A 47 (Pt 2), 110-9.
25. Kraulis, P. J. (1991) J. Appl. Crystallogr. 24, 945-949.
26. McRee, D. E. (1999) J. Struct. Biol. 125, 156-65.
27. Merritt, E. A., and Bacon, D. J. (1997) Methods Enzymol. 277, 505-24.
28. Zhang, Z., Ren, J., Stammers, D. K., Baldwin, J. E., Harlos, K., and Schofield, C. J. (2000) Nat. Struct. Biol. 7, 127-33.
29. Zhang, Z., Ren, J., Harlos, K., McKinnon, C. H., Clifton, I. J., and Schofield, C. J. (2002) FEBS Lett. 517, 7-12.
30. Fernandez, A., Sosnick, T. R., and Colubri, A. (2002) J. Mol. Biol. 321, 659-75.
31. Fernandez, A., and Scheraga, H. A. (2003) Proc. Natl. Acad. Sci. U.S.A. 100, 113-8.
32. Hogan, D. A., Smith, S. R., Saari, E. A., McCracken, J., and Hausinger, R. P. (2000) J. Biol. Chem. 275, 1200-12409.
33. Arnesano, F., Banci, L., Bertini, I., Ciofi-Baffoni, S., Molteni, E., Huffman, D. L., and O'Halloran, T. V. (2002) Genome. Res. 12, 255-71.
34. Burzlaff, N. I., Rutledge, P. J., Clifton, I. J., Hensgens, C. M., Pickford, M., Adlington, R. M., Roach, P. L., and Baldwin, J. E. (1999) Nature 401, 721-4.
35. Solomon, E. I., Brunold, T. C., Davis, M. I., Kemsley, J. N., Lee, S. K., Lehnert, N., Neese, F., Skulan, A. J., Yang, Y. S., and Zhou, J. (2000) Chem. Rev. 100, 235-350.