Herbicide-degrading α-keto acid-dependent enzyme TfdA: Metal coordination environment and mechanistic insights

Biochemistry

Volumn 38, Issue 50, 1999, Pages 16714-16726

  Hegg, Eric L ^a,c   Whiting, Adam K ^a   Saari, Ruth E ^b   McCracken, John ^b   Hausinger, Robert P ^b   Que Jr , Lawrence ^a  

^a UNIVERSITY OF MINNESOTA   (United States)

^b MICHIGAN STATE UNIVERSITY   (United States)

^c UNIVERSITY OF UTAH   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

2 OXOACID; 2 OXOGLUTARIC ACID; 2,4 DICHLOROPHENOXYACETIC ACID; ENZYME; HERBICIDE; IMIDAZOLE DERIVATIVE; IRON; METAL ION; NITRIC OXIDE; SYNTHETASE;

ARTICLE; BINDING SITE; CRYSTAL STRUCTURE; DECARBOXYLATION; ELECTRON SPIN RESONANCE; ENZYME MECHANISM; NONHUMAN; OXIDATION; PRIORITY JOURNAL; SPECTROSCOPY;

2,4-DICHLOROPHENOXYACETIC ACID; ALCALIGENES; BINDING SITES; BIODEGRADATION, ENVIRONMENTAL; COPPER; DEUTERIUM; ELECTRON SPIN RESONANCE SPECTROSCOPY; FERRIC COMPOUNDS; IRON; LIGANDS; METALS; MIXED FUNCTION OXYGENASES; NITRIC OXIDE; OXYGEN;

NEGIBACTERIA;

EID: 0033554854     PISSN: 00062960     EISSN: None     Source Type: Journal    
DOI: 10.1021/bi991796l     Document Type: Article

References (67)

1. Abbott, M. T., and Udenfriend, S. (1974) in Molecular Mechanisms of Oxygen Activation (Hayaishi, O., Ed.) pp 167-214, Academic Press, New York.
2. Que, L., Jr., and Ho, R. Y. N. (1996) Chem. Rev. 96, 2607-2624.
3. Prescott, A. G., and John, P. (1996) Annu. Rev. Plant Physiol. Plant Mol. Biol. 47, 245-271.
4. Holme, E. (1975) Biochemistry 14, 4999-5003.
5. De Carolis, E., and De Luca, V. (1993) J. Biol. Chem. 268, 5504-5511.
6. Myllylä, R., Tuderman, L., and Kivirikko, K. I. (1977) Eur. J. Biochem. 80, 349-357.
7. Puistola, U., Turpeenniemi-Hujanen, T. M., Myllylä, R., and Kivirikko, K. I. (1980) Biochim. Biophys. Acta 611, 51-60.
8. Lloyd, M. D., Lee, H.-J., Harlos, K., Zhang, Z.-H., Baldwin, J. E., Schofield, C. J., Charnock, J. M., Garner, C. D., Hara, T., van Scheltinga, A. C. T., Valegård, K., Viklund, J. A. C., Hajdu, J., Andersson, I., Danielsson, A., and Bhikhabhai, R. (1999) J. Mol. Biol. 287, 943-960.
9. Valegård, K., van Scheltinga, A. C. T., Lloyd, M. D., Hara, T., Ramaswamy, S., Perrakis, A., Thompson, A., Lee, H.-J., Baldwin, J. E., Schofield, C. J., Hajdu, J., and Andersson, I. (1998) Nature 394, 805-809.
10. Serre, L., Sailland, A., Sy, D., Boudec, P., Rolland, A., Pebay-Peyroula, E., and Cohen-Addad, C. (1999) Structure 7, 977-988.
11. Senda, T., Sugiyama, K., Narita, H., Yamamoto, T., Kimbara, K., Fukuda, M., Sato, M., Yano, K., and Mitsui, Y. (1996) J. Mol. Biol. 255, 735-752.
12. Han, S., Eltis, L. D., Timmis, K. N., Muchmore, S. W., and Bolin, J. T. (1995) Science 270, 976-980.
13. Kita, A., Kita, S., Fujisawa, I., Inaka, K., Ishida, T., Horiike, K., Nozaki, M., and Miki, K. (1999) Structure 7, 25-34.
14. Sugimoto, K., Senda, T., Aoshima, H., Masai, E., Fukuda, M., and Mitsui, Y. (1999) Structure 7, 953-965.
15. Goodwill, K. E., Sabatier, C., and Stevens, R. C. (1998) Biochemistry 37, 13437-13445.
16. Erlandsen, H., Flatmark, T., Stevens, R. C., and Hough, E. (1998) Biochemistry 37, 15638-15646.
17. Kauppi, B., Lee, K., Carredano, E., Parales, R. E., Gibson, D. T., Eklund, H., and Ramaswamy, S. (1998) Structure 6, 571-586.
18. Roach, P. L., Clifton, I. J., Hensgens, C. M. H., Shibata, N., Schofield, C. J., Hajdu, J., and Baldwin, J. E. (1997) Nature 387, 827-830.
19. Hegg, E. L., and Que, L., Jr. (1997) Eur. J. Biochem. 250, 625-629.
20. Hegg, E. L., Ho, R. Y. N., and Que, L., Jr. (1999) J. Am. Chem. Soc. 121, 1972-1973.
21. Chiou, Y.-M., and Que, L., Jr. (1995) J. Am. Chem. Soc. 117, 3999-4013.
22. Hikichi, S., Ogihara, T., Fujisawa, K., Kitajima, N., Akita, M., and Moro-oka, Y. (1997) Inorg. Chem. 36, 4539-4547.
23. Pavel, E. G., Zhou, J., Busby, R. W., Gunsior, M., Townsend, C. A., and Solomon, E. I. (1998) J. Am. Chem. Soc. 120, 743-753.
24. Zhou, J., Gunsior, M., Bachmann, B. O., Townsend, C. A., and Solomon, E. I. (1998) J. Am. Chem. Soc. 120, 13539-13540.
25. Ha, E. H., Ho, R. Y. N., Kosiel, J. F., and Valentine, J. S. (1995) Inorg. Chem. 34, 2265-2266.
26. Hanauske-Abel, H. M., and Günzler, V. (1982) J. Theor. Biol. 94, 421-455.
27. Fukumori, F., and Hausinger, R. P. (1993) J. Biol. Chem. 268, 24311-24317.
28. Fukumori, F., and Hausinger, R. P. (1993) J. Bacteriol. 175, 2083-2086.
29. Streber, W. R., Timmis, K. N., and Zenk, M. H. (1987) J. Bacteriol. 169, 2950-2955.
30. Borovok, I., Landman, O., Kreisberg-Zakarin, R., Aharonowitz, Y., and Cohen, G. (1996) Biochemistry 35, 1981-1987.
31. Cosper, N. J., Stålhandske, C. M. V., Saari, R. E., Hausinger, R. P., and Scott, R. A. (1999) J. Biol. Inorg. Chem. 4, 122-129.
32. Whiting, A. K., Que, L., Jr., Saari, R. E., Hausinger, R. P., Fredrick, M. A., and McCracken, J. (1997) J. Am. Chem. Soc. 119, 3413-3414.
33. Fasman, G. D., Ed. (1976) Handbook of Biochemistry and Molecular Biology, CRC Press, Inc. CRC Press, Inc. Boca Raton, FL.
34. Saari, R. E., and Hausinger, R. P. (1998) Biochemistry 37, 3035-3042.
35. Belford, R. L., and Belford, G. G. (1973) J. Chem. Phys. 59, 853-854.
36. Cammack, R., and Cooper, C. E. (1993) Methods Enzymol. 227, 353-384.
37. McCracken, J., Shin, D.-H., and Dye, J. L. (1992) Appl. Magn. Reson. 3, 305-316.
38. Lin, C. P., Bowman, M. K., and Norris, J. R. (1985) J. Magn. Reson. 65, 369-374.
39. Britt, R. D., and Klein, M. P. (1987) J. Magn. Reson. 74, 535-540.
40. Minis, W. B. (1984) J. Magn. Reson. 59, 291-306.
41. Mims, W. B. (1972) Phys. Rev. B 5, 2409-2419.
42. Bertini, I., and Scozzafava, A. (1981) Metal Ions Biol. Sys. 12, 31-74.
43. Solomon, E. I., Baldwin, M. J., and Lowery, M. D. (1992) Chem. Rev. 92, 521-542.
44. Peisach, J., and Blumberg, W. E. (1974) Arch. Biochem. Biophys. 165, 691-708.
45. Rosenberg, R. C., Root, C. A., Bernstein, P. K., and Gray, H. B. (1975) J. Am. Chem. Soc. 97, 2092-2096.
46. Addison, A. W. (1983) in Copper Coordination Chemistry: Biochemical and Inorganic Perspectives (Karlin, K. D., and Zubieta, J., Eds.) pp 109-128, Adenine Press, New York.
47. Styring, S., and Brändén, R. (1985) Biochemistry 24, 6011-6019.
48. Dickinson, L. C., Rose, S. L., and Westhead, E. W. (1980) J. Inorg. Biochem. 13, 353-366.
49. Andersson, I. (1996) J. Mol. Biol. 259, 160-174.
50. Larsen, T. M., Wedekind, J. E., Rayment, I., and Reed, G. H. (1996) Biochemistry 35, 4349-4358.
51. Coulter, E. D., Moon, N., Batie, C. J., Dunham, W. R., and Ballou, D. P. (1999) Biochemistry 38, 11062-11072.
52. Rowan, L. G., Hahn, E. L., and Mims, W. B. (1965) Phys. Rev. 137, A61-A71.
53. Dikanov, S. A., Shubin, A. A., and Parmon, V. N. (1981) J. Magn. Reson. 42, 474-487.
54. Mims, W. B., Davis, J. L., and Peisach, J. (1984) Biophys. J. 45, 755-766.
55. McCracken, J., Peisach, J., and Dooley, D. M. (1987) J. Am. Chem. Soc. 109, 4064-4072.
56. Atherton, N. M., and Horsewill, A. J. (1979) Mol. Phys. 37, 1349-1361.
57. Kevan, L., Bowman, M. K., Narayana, P. A., Boeckman, R. K., Yudanov, V. F., and Tsvetkov, L. (1975) J. Chem. Phys. 63, 409-416.
58. Chiou, Y.-M., and Que, L., Jr. (1995) Inorg. Chem. 34, 3270-3278.
59. Wolgel, S. A., Dege, J. E., Perkins-Olson, P. E., Juarez-Garcia, C. H., Crawford, R. L., Münck, E., and Lipscomb, J. D. (1993) J. Bacteriol 175, 4414-4426.
60. Arciero, D. M., Orville, A. M., and Lipscomb, J. D. (1985) J. Biol. Chem. 260, 14035-14044.
61. Chen, V. J., Orville, A. M., Harpel, M. R., Frolik, C. A., Surerus, K. K., Münck, E., and Lipscomb, J. D. (1989) J. Biol. Chem. 264, 21677-21681.
62. Feltham, R. D., and Enemark, J. H. (1981) Top. Stereochem. 12, 155-215.
63. Brown, C. A., Pavlosky, M. A., Westre, T. E., Zhang, Y., Hedman, B., Hodgson, K. O., and Solomon, E. I. (1995) J. Am. Chem. Soc. 117, 715-732.
64. Ryle, M. J., Padmakumar, R., and Hausinger, R. P. (1999) Biochemistry 46, 15278-15286.
65. Zheng, H., and Que, L., Jr. (1997) Inorg. Chim. Acta 263, 301-307.
66. Sono, M., Roach, M. P., Coulter, E. D., and Dawson, J. H. (1996) Chem. Rev. 96, 2841-2887.
67. Wallar, B. J., and Lipscomb, J. D. (1996) Chem. Rev. 96, 2625-2657.