-
1
-
-
0024316913
-
-
Dumas, D. P.; Caldwell, S. R.; Wild, J. R.; Raushel, F. M. J. Biol. Chem. 1989, 264, 19659.
-
(1989)
J. Biol. Chem.
, vol.264
, pp. 19659
-
-
Dumas, D.P.1
Caldwell, S.R.2
Wild, J.R.3
Raushel, F.M.4
-
2
-
-
0343580454
-
-
(a) Kuo, J. M.; Chae, M. Y.; Raushel, F. M. Biochemistry 1997, 36, 1982.
-
(1997)
Biochemistry
, vol.36
, pp. 1982
-
-
Kuo, J.M.1
Chae, M.Y.2
Raushel, F.M.3
-
3
-
-
0030798915
-
-
(b) Hong, S.-B.; Mullins, L. S.; Shim, H.; Raushel, F. M. Biochemistry 1997, 36, 9022.
-
(1997)
Biochemistry
, vol.36
, pp. 9022
-
-
Hong, S.-B.1
Mullins, L.S.2
Shim, H.3
Raushel, F.M.4
-
4
-
-
0000800918
-
-
(c) Seo, J. S.; Hynes, R. C.; Williams, D.; Chin, J. J. Am. Chem. Soc. 1998, 120, 9945.
-
(1998)
J. Am. Chem. Soc.
, vol.120
, pp. 9945
-
-
Seo, J.S.1
Hynes, R.C.2
Williams, D.3
Chin, J.4
-
5
-
-
0029993512
-
-
Vanhooke, J. L.; Benning, M. M.; Raushel, F. M.; Holden, H. M. Biochemistry 1996, 35, 6020.
-
(1996)
Biochemistry
, vol.35
, pp. 6020
-
-
Vanhooke, J.L.1
Benning, M.M.2
Raushel, F.M.3
Holden, H.M.4
-
6
-
-
0004279414
-
-
University of California, San Francisco
-
Pearlman, D. A.; Case, D. A.; Caldwell, J. W.; Ross, W. S.; Cheatham, T. E., III; Ferguson, D. M.; Seibel, G. L.; Singh, U. C.; Weiner, P. K.; Kollman, P. A. AMBER 4.1, University of California, San Francisco, 1995.
-
(1995)
AMBER 4.1
-
-
Pearlman, D.A.1
Case, D.A.2
Caldwell, J.W.3
Ross, W.S.4
Cheatham T.E. III5
Ferguson, D.M.6
Seibel, G.L.7
Singh, U.C.8
Weiner, P.K.9
Kollman, P.A.10
-
7
-
-
0029011701
-
-
(a) Cornell, W. D.; Cieplak, P.; Bayly, C. I.; Gould, I. R.; Merz, K. M., Jr.; Ferguson, D. M.; Spellmeyer, D. C.; Fox, T.; Caldwell, J. W.; Kollman, P. A. J. Am. Chem. Soc. 1995, 117, 5179.
-
(1995)
J. Am. Chem. Soc.
, vol.117
, pp. 5179
-
-
Cornell, W.D.1
Cieplak, P.2
Bayly, C.I.3
Gould, I.R.4
Merz K.M., Jr.5
Ferguson, D.M.6
Spellmeyer, D.C.7
Fox, T.8
Caldwell, J.W.9
Kollman, P.A.10
-
8
-
-
0344574129
-
-
note
-
(b) The RESP charges in the carbamylated Lys 169 and diethyl 4-methylbenzylphosphonate were determined by ourselves following the standard RESP procedure described in ref 5a. The bond and rotational parameters of a carboxylic group were used for the carbamylate end of Lys 169, and the bond and rotational parameters for the methoxy groups in the inhibitor were modeled on the basis of the parameters for the phosphate group of nucleic acid.
-
-
-
-
10
-
-
0000179594
-
-
(a) Ohtaki, H.; Yamaguchi, T.; Maeda, M. Bull. Chem. Soc. Jpn. 1976, 49, 701.
-
(1976)
Bull. Chem. Soc. Jpn.
, vol.49
, pp. 701
-
-
Ohtaki, H.1
Yamaguchi, T.2
Maeda, M.3
-
12
-
-
33846823909
-
-
Essmann, U.; Perera, L.; Berkowitz, M. L.; Darden, T. A.; Lee, H., Pedersen; L. G. J. Chem. Phys. 1995, 98, 10089.
-
(1995)
J. Chem. Phys.
, vol.98
, pp. 10089
-
-
Essmann, U.1
Perera, L.2
Berkowitz, M.L.3
Darden, T.A.4
Lee, H.5
Pedersen, L.G.6
-
13
-
-
33750587438
-
-
Berendsen, H. C.; Postma, J. P. M.; van Gunsteren, W. F.; DiNola, A.; Haak, J. R. J. Comput. Phys. 1984, 81, 3684.
-
(1984)
J. Comput. Phys.
, vol.81
, pp. 3684
-
-
Berendsen, H.C.1
Postma, J.P.M.2
Van Gunsteren, W.F.3
DiNola, A.4
Haak, J.R.5
-
14
-
-
33646940952
-
-
Ryckaert, J. P.; Ciccotti, G.; Berendsen, H. C. J. Comput. Phys. 1977, 23, 327.
-
(1977)
J. Comput. Phys.
, vol.23
, pp. 327
-
-
Ryckaert, J.P.1
Ciccotti, G.2
Berendsen, H.C.3
-
15
-
-
0004133516
-
-
B. G. Gaussian, Inc., Pittsburgh, PA
-
Frisch, M. J.; Trucks, G. W.; Schlegel, H. B.; Gill, P. M. W.; B. G. Johnson, B. G.; Robb, M. A.; Cheeseman, J. R.; Keith, T.; Petersson, G. A.; Montgomery, J. A.; Raghavachari, K.; Al-Laham, M. A.; Zakrzewski, V. G.; Ortiz, J. V.; Foresman, J. B.; Cioslowski, J.; Stefanov, B. B.; Nanayakkara, A.; Challacombe, M.; Peng, C. Y.; Ayala, P. Y.; Chen, W.; Wong, M. W.; Andres, J. L.; Replogle, E. S.; Gomperts, R.; Martin, R. L.; Fox, D. J.; Binkley, J. S.; Defrees, D. J.; Baker, J.; Stewart, J. P.; Head-Gordon, M.; Gonzalez, C.; Pople, J. A. Gaussian 94, Revision D.1, Gaussian, Inc., Pittsburgh, PA, 1995.
-
(1995)
Gaussian 94, Revision D.1
-
-
Frisch, M.J.1
Trucks, G.W.2
Schlegel, H.B.3
Gill, P.M.W.4
Johnson, B.G.5
Robb, M.A.6
Cheeseman, J.R.7
Keith, T.8
Petersson, G.A.9
Montgomery, J.A.10
Raghavachari, K.11
Al-Laham, M.A.12
Zakrzewski, V.G.13
Ortiz, J.V.14
Foresman, J.B.15
Cioslowski, J.16
Stefanov, B.B.17
Nanayakkara, A.18
Challacombe, M.19
Peng, C.Y.20
Ayala, P.Y.21
Chen, W.22
Wong, M.W.23
Andres, J.L.24
Replogle, E.S.25
Gomperts, R.26
Martin, R.L.27
Fox, D.J.28
Binkley, J.S.29
Defrees, D.J.30
Baker, J.31
Stewart, J.P.32
Head-Gordon, M.33
Gonzalez, C.34
Pople, J.A.35
more..
-
17
-
-
0001508425
-
-
(b) Rassolov, V. A.; Pople, J. A.; Ratner, M. A.; Windus, T. L. J. Chem. Phys. 1998, 109, 1223.
-
(1998)
J. Chem. Phys.
, vol.109
, pp. 1223
-
-
Rassolov, V.A.1
Pople, J.A.2
Ratner, M.A.3
Windus, T.L.4
-
19
-
-
0345491105
-
-
(b) Lee, C.; Yang, W.; Parr, R. G. Phys. Rev. B 1988, 37, 785.
-
(1988)
Phys. Rev. B
, vol.37
, pp. 785
-
-
Lee, C.1
Yang, W.2
Parr, R.G.3
-
20
-
-
84893169025
-
-
Schmidt, M. W.; Baldridge, K. K.; Boatz, J. A.; Elbert, S. T.; Gordon, M. S.; Jensen, J. H.; Koseki, S.; Matsunaga, N.; Nguyen, K. A.; Su, S. J.; Windus, T. L.; Dupuis, M.; Montgomery, J. A. J. Comput. Chem. 1993, 14, 1347.
-
(1993)
J. Comput. Chem.
, vol.14
, pp. 1347
-
-
Schmidt, M.W.1
Baldridge, K.K.2
Boatz, J.A.3
Elbert, S.T.4
Gordon, M.S.5
Jensen, J.H.6
Koseki, S.7
Matsunaga, N.8
Nguyen, K.A.9
Su, S.J.10
Windus, T.L.11
Dupuis, M.12
Montgomery, J.A.13
-
21
-
-
0001642299
-
-
(a) Zhan, C.-G.; Bentley, J.; Chipman, D. M. J. Chem. Phys. 1998, 108, 177.
-
(1998)
J. Chem. Phys.
, vol.108
, pp. 177
-
-
Zhan, C.-G.1
Bentley, J.2
Chipman, D.M.3
-
24
-
-
0344142713
-
-
note
-
(d) Dielectric constant used in this study for aqueous solution is 78.5.
-
-
-
-
25
-
-
33751500123
-
-
Lim, C.; Bashford, D.; Karplus, M. J. Phys. Chem. 1991, 95, 5610.
-
(1991)
J. Phys. Chem.
, vol.95
, pp. 5610
-
-
Lim, C.1
Bashford, D.2
Karplus, M.3
-
26
-
-
0026748791
-
-
Omburo, G. A.; Kuo, J. M.; Mullins, L. S.; Raushel, F. M. J. Biol. Chem. 1992, 267, 13278.
-
(1992)
J. Biol. Chem.
, vol.267
, pp. 13278
-
-
Omburo, G.A.1
Kuo, J.M.2
Mullins, L.S.3
Raushel, F.M.4
-
27
-
-
0024340489
-
-
Donarski, W. J.; Dumas, D. P.; Heitmeyer, D. P.; Lewis, V. E.; Raushel, F. M. Biochemistry 1989, 28, 4650.
-
(1989)
Biochemistry
, vol.28
, pp. 4650
-
-
Donarski, W.J.1
Dumas, D.P.2
Heitmeyer, D.P.3
Lewis, V.E.4
Raushel, F.M.5
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