메뉴 건너뛰기




Volumn 15, Issue 4, 1998, Pages 442-448

Estimating divergence dates from molecular sequences

Author keywords

Avian origins; Maximum likelihood; Molecular clock; Phylogeny; Quartet

Indexed keywords

ARTICLE; BIRD; FOSSIL; GENETIC VARIABILITY; MAXIMUM LIKELIHOOD METHOD; MOLECULAR EVOLUTION; NONHUMAN; NUCLEOTIDE SEQUENCE; PHYLOGENY; SPECIES DIFFERENTIATION;

EID: 0031966291     PISSN: 07374038     EISSN: None     Source Type: Journal    
DOI: 10.1093/oxfordjournals.molbev.a025940     Document Type: Article
Times cited : (216)

References (25)
  • 1
    • 0029039263 scopus 로고
    • Improved dating of the human/chimpanzee separation in the mitochondrial DNA tree: Heterogeneity among amino acid sites
    • ADACHI, J., and M. HASEGAWA. 1995. Improved dating of the human/chimpanzee separation in the mitochondrial DNA tree: heterogeneity among amino acid sites. J. Mol. Evol. 40:622-628.
    • (1995) J. Mol. Evol. , vol.40 , pp. 622-628
    • Adachi, J.1    Hasegawa, M.2
  • 2
    • 0030468869 scopus 로고    scopus 로고
    • Pattern and timing of evolutionary divergences among hominoids based on analyses of complete mtDNAs
    • ARNASON, U., A. GULLBERG, A. JANKE, and X.-F. XU. 1996. Pattern and timing of evolutionary divergences among hominoids based on analyses of complete mtDNAs. J. Mol. Evol. 43:650-661.
    • (1996) J. Mol. Evol. , vol.43 , pp. 650-661
    • Arnason, U.1    Gullberg, A.2    Janke, A.3    Xu, X.-F.4
  • 3
    • 0026778673 scopus 로고
    • Extensive variation in evolutionary rate of rbcL gene sequences among seed plants
    • BOSQUET, J., S. H. STRAUSS, A. H. DOEKSEN, and R. A. PRICE. 1992. Extensive variation in evolutionary rate of rbcL gene sequences among seed plants. Proc. Natl. Acad. Sci. USA 89:7844-7848.
    • (1992) Proc. Natl. Acad. Sci. USA , vol.89 , pp. 7844-7848
    • Bosquet, J.1    Strauss, S.H.2    Doeksen, A.H.3    Price, R.A.4
  • 4
    • 0030442757 scopus 로고    scopus 로고
    • Determinants of rate variation in DNA sequence evolution of mammals
    • BROMHAM, L. D., A. E. RAMBAUT, and P. H. HARVEY. 1996. Determinants of rate variation in DNA sequence evolution of mammals. J. Mol. Evol. 43:610-621.
    • (1996) J. Mol. Evol. , vol.43 , pp. 610-621
    • Bromham, L.D.1    Rambaut, A.E.2    Harvey, P.H.3
  • 5
    • 0030621127 scopus 로고    scopus 로고
    • Mass survival of birds across the Cretaceous-Tertiary boundary: Molecular evidence
    • COOPER, A., and D. PENNY. 1997. Mass survival of birds across the Cretaceous-Tertiary boundary: molecular evidence. Science 275:1109-1113.
    • (1997) Science , vol.275 , pp. 1109-1113
    • Cooper, A.1    Penny, D.2
  • 6
    • 0028956985 scopus 로고
    • Explosive evolution in Tertiary birds and mammals
    • FEDUCCIA, A. 1995. Explosive evolution in Tertiary birds and mammals. Science 267:637-638.
    • (1995) Science , vol.267 , pp. 637-638
    • Feduccia, A.1
  • 7
    • 0019797407 scopus 로고
    • Evolutionary trees from DNA sequences: A maximum-likelihood approach
    • FELSENSTEIN, J. 1981. Evolutionary trees from DNA sequences: a maximum-likelihood approach. J. Mol. Evol. 17:368-376.
    • (1981) J. Mol. Evol. , vol.17 , pp. 368-376
    • Felsenstein, J.1
  • 8
    • 0026099641 scopus 로고
    • Robustness of maximum-likelihood tree estimation against different patterns of base substitutions
    • FUKAMI, K. K., and Y. TATENO. 1991. Robustness of maximum-likelihood tree estimation against different patterns of base substitutions. J. Mol. Evol. 32:79-91.
    • (1991) J. Mol. Evol. , vol.32 , pp. 79-91
    • Fukami, K.K.1    Tateno, Y.2
  • 9
    • 0028887457 scopus 로고
    • Success of maximum-likelihood phylogeny inference in the four-taxon case
    • GAUT, B. S., and P. O. LEWIS. 1995. Success of maximum-likelihood phylogeny inference in the four-taxon case. Mol. Biol. Evol. 12:152-162.
    • (1995) Mol. Biol. Evol. , vol.12 , pp. 152-162
    • Gaut, B.S.1    Lewis, P.O.2
  • 10
    • 0026469557 scopus 로고
    • Relative rates of nucleotide subsitution at the rbcL locus of monocotyledonous plants
    • GAUT, B. S., S. V. MUSE, W. D. CLARK, and M. T. CLEGG. 1992. Relative rates of nucleotide subsitution at the rbcL locus of monocotyledonous plants. J. Mol. Evol. 35:292-303.
    • (1992) J. Mol. Evol. , vol.35 , pp. 292-303
    • Gaut, B.S.1    Muse, S.V.2    Clark, W.D.3    Clegg, M.T.4
  • 11
    • 0027526039 scopus 로고
    • Statistical tests of models of DNA substitution
    • GOLDMAN, N. 1993. Statistical tests of models of DNA substitution. J. Mol. Evol. 36:182-198.
    • (1993) J. Mol. Evol. , vol.36 , pp. 182-198
    • Goldman, N.1
  • 12
    • 0022376704 scopus 로고
    • Dating the human-ape splitting by a molecular clock of mitochondrial DNA
    • HASEGAWA, M., H. KISHINO, and T. YANO. 1985. Dating the human-ape splitting by a molecular clock of mitochondrial DNA. J. Mol. Evol. 22:160-174.
    • (1985) J. Mol. Evol. , vol.22 , pp. 160-174
    • Hasegawa, M.1    Kishino, H.2    Yano, T.3
  • 13
    • 38249007654 scopus 로고
    • Estimation of branching dates among primates by molecular clocks of nuclear DNA which slowed down in Hominoidea
    • _. 1989. Estimation of branching dates among primates by molecular clocks of nuclear DNA which slowed down in Hominoidea. J. Hum. Evol. 18:461-476.
    • (1989) J. Hum. Evol. , vol.18 , pp. 461-476
  • 14
    • 0029669270 scopus 로고    scopus 로고
    • Continental breakup and the ordinal diversification of birds and mammals
    • HEDGES, S. B., P. H. PARKER, C. G. SIBLEY, and S. KUMAR. 1996. Continental breakup and the ordinal diversification of birds and mammals. Nature 381:226-229.
    • (1996) Nature , vol.381 , pp. 226-229
    • Hedges, S.B.1    Parker, P.H.2    Sibley, C.G.3    Kumar, S.4
  • 15
    • 0000704795 scopus 로고    scopus 로고
    • Applications of molecular systematics: The state of the field and a look to the future
    • D. M. HILLIS, C. MORITZ, and B. K. MABLE, eds. Sinauer, Sunderland, Mass.
    • HILLIS, D. M., B. K. MABLE, and C. MORITZ. 1996. Applications of molecular systematics: the state of the field and a look to the future. Pp. 515-543 in D. M. HILLIS, C. MORITZ, and B. K. MABLE, eds. Molecular systematics. Sinauer, Sunderland, Mass.
    • (1996) Molecular Systematics , pp. 515-543
    • Hillis, D.M.1    Mable, B.K.2    Moritz, C.3
  • 16
    • 0002410257 scopus 로고    scopus 로고
    • Parametric bootstrapping in molecular phylogenetics: Applications and performance
    • J. FERRARIS and S. PALUMBI, eds. Wiley, New York
    • HUELSENBECK, J. P., D. M. HILLIS, and R. JONES. 1996. Parametric bootstrapping in molecular phylogenetics: applications and performance. Pp. 19-45 in J. FERRARIS and S. PALUMBI, eds. Molecular zoology: strategies and protocols. Wiley, New York.
    • (1996) Molecular Zoology: Strategies and Protocols , pp. 19-45
    • Huelsenbeck, J.P.1    Hillis, D.M.2    Jones, R.3
  • 17
    • 0000732090 scopus 로고
    • Evolution of protein molecules
    • H. N. MUNRO, ed. Academic Press, New York
    • JUKES, T. H., and C. R. CANTOR. 1969. Evolution of protein molecules. Pp. 21-123 in H. N. MUNRO, ed. Mammalian protein metabolism. Academic Press, New York.
    • (1969) Mammalian Protein Metabolism , pp. 21-123
    • Jukes, T.H.1    Cantor, C.R.2
  • 18
    • 0028696013 scopus 로고
    • Metabolic rate, generation time and the rate of molecular evolution in birds
    • MOOERS, A. O., and P. H. HARVEY. 1994. Metabolic rate, generation time and the rate of molecular evolution in birds. Mol. Phylogenet. Evol. 3:344-350.
    • (1994) Mol. Phylogenet. Evol. , vol.3 , pp. 344-350
    • Mooers, A.O.1    Harvey, P.H.2
  • 19
    • 0030928378 scopus 로고    scopus 로고
    • Seq-Gen: An application for the Monte Carlo simulation of DNA sequence evolution along phylogenetic trees
    • RAMBAUT, A., and N. C. GRASSLY. 1997. Seq-Gen: an application for the Monte Carlo simulation of DNA sequence evolution along phylogenetic trees. Comput. Appl. Biosci. 13:235-238.
    • (1997) Comput. Appl. Biosci. , vol.13 , pp. 235-238
    • Rambaut, A.1    Grassly, N.C.2
  • 21
    • 0029100727 scopus 로고
    • Phylogenetic test of the molecular clock and linearized trees
    • TAKEZAKI, N., A. RZHETSKY, and M. NEI. 1995. Phylogenetic test of the molecular clock and linearized trees. Mol. Biol. Evol. 12:823-833.
    • (1995) Mol. Biol. Evol. , vol.12 , pp. 823-833
    • Takezaki, N.1    Rzhetsky, A.2    Nei, M.3
  • 22
    • 0030425648 scopus 로고    scopus 로고
    • Molecular evidence for deep precambrian divergences among metazoan phyla
    • WRAY, G. A., J. S. LEVINTON, and L. H. SHAPIRO. 1996. Molecular evidence for deep precambrian divergences among metazoan phyla. Science 274:568-573.
    • (1996) Science , vol.274 , pp. 568-573
    • Wray, G.A.1    Levinton, J.S.2    Shapiro, L.H.3
  • 23
    • 0028064845 scopus 로고
    • Maximum-likelihood phylogenetic estimation from DNA sequences with variable rates over sites: Approximate methods
    • YANG, Z. 1994. maximum-likelihood phylogenetic estimation from DNA sequences with variable rates over sites: approximate methods. J. Mol. Evol. 39:306-314.
    • (1994) J. Mol. Evol. , vol.39 , pp. 306-314
    • Yang, Z.1
  • 24
    • 0030451420 scopus 로고    scopus 로고
    • Among-site rate variation and its impact on phylogenetic analyses
    • _. 1996. Among-site rate variation and its impact on phylogenetic analyses. Trends Ecol. Evol. 11:367-372.
    • (1996) Trends Ecol. Evol. , vol.11 , pp. 367-372
  • 25
    • 0029469716 scopus 로고
    • Maximum-likelihood trees from DNA sequences: A peculiar statistical estimation problem
    • YANG, Z., N. GOLDMAN, and A. FRIDAY. 1995. Maximum-likelihood trees from DNA sequences: a peculiar statistical estimation problem. Syst. Biol. 44:384-399.
    • (1995) Syst. Biol. , vol.44 , pp. 384-399
    • Yang, Z.1    Goldman, N.2    Friday, A.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.