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Volumn 74, Issue 4, 1999, Pages 117-127

Paleo-demography of the Drosophila melanogaster subgroup: Application of the maximum likelihood method

Author keywords

[No Author keywords available]

Indexed keywords

DNA;

EID: 0033178244     PISSN: 13417568     EISSN: None     Source Type: Journal    
DOI: 10.1266/ggs.74.117     Document Type: Article
Times cited : (66)

References (45)
  • 1
    • 0028797897 scopus 로고
    • Inferring weak selection from patterns of polymorphism and divergence at "silent" sites in Drosophila DNA
    • Akashi, H. (1995) Inferring weak selection from patterns of polymorphism and divergence at "silent" sites in Drosophila DNA. Genetics 139: 1067-1076.
    • (1995) Genetics , vol.139 , pp. 1067-1076
    • Akashi, H.1
  • 4
    • 0020323414 scopus 로고
    • Molecular evolution in Drosophila and higher Diptera. I. Micro-complement fixation studies of a larval hemolymph protein
    • Beverley, S. M. and Wilson, A. C. (1982) Molecular evolution in Drosophila and higher Diptera. I. Micro-complement fixation studies of a larval hemolymph protein. J. Mol. Evol. 18, 251-264.
    • (1982) J. Mol. Evol. , vol.18 , pp. 251-264
    • Beverley, S.M.1    Wilson, A.C.2
  • 5
    • 0021244080 scopus 로고
    • Conservation and change in the DNA sequences coding for alcohol dehydrogenase in sibling species of Drosophila
    • Bodmer, M. and Ashburner, M. (1984) Conservation and change in the DNA sequences coding for alcohol dehydrogenase in sibling species of Drosophila. Nature 309, 425-430.
    • (1984) Nature , vol.309 , pp. 425-430
    • Bodmer, M.1    Ashburner, M.2
  • 6
    • 0023990929 scopus 로고
    • Rates and patterns of scnDNA and mtDNA divergence within the Drosophila melanogaster subgroup
    • Caccone, A., Amato, A. D., and Powell, J. R. (1988) Rates and patterns of scnDNA and mtDNA divergence within the Drosophila melanogaster subgroup. Genetics 118, 671-683.
    • (1988) Genetics , vol.118 , pp. 671-683
    • Caccone, A.1    Amato, A.D.2    Powell, J.R.3
  • 7
    • 0023492339 scopus 로고
    • Biochemical phylogeny of the eight species in the Drosophila melanogaster subgroup, including D. Sechellia and D. Orena
    • Cariou, M. L. (1987) Biochemical phylogeny of the eight species in the Drosophila melanogaster subgroup, including D. sechellia and D. orena. Genet. Res. Camb. 50, 181-185.
    • (1987) Genet. Res. Camb. , vol.50 , pp. 181-185
    • Cariou, M.L.1
  • 8
    • 0023998356 scopus 로고
    • Genetic variation of Drosophila melanogaster natural populations
    • David, J. R, and Capy, P. (1988) Genetic variation of Drosophila melanogaster natural populations. Trends Genet. 4 (4), 106-111.
    • (1988) Trends Genet. , vol.4 , Issue.4 , pp. 106-111
    • David, J.R.1    Capy, P.2
  • 9
    • 0002033443 scopus 로고
    • The logic of inductive inference
    • Fisher, R. A. (1935) The logic of inductive inference. J. Roy. Stat. Soc. 98, 39-54.
    • (1935) J. Roy. Stat. Soc. , vol.98 , pp. 39-54
    • Fisher, R.A.1
  • 10
    • 0017646276 scopus 로고
    • Statistical studies on protein polymorphism in natural populations. I. Distribution of single locus heterozygosity
    • Fuerst, P. A., Chakraborty, R., and Nei, M. (1977) Statistical studies on protein polymorphism in natural populations. I. Distribution of single locus heterozygosity. Genetics 86, 455-483.
    • (1977) Genetics , vol.86 , pp. 455-483
    • Fuerst, P.A.1    Chakraborty, R.2    Nei, M.3
  • 11
    • 0029910525 scopus 로고    scopus 로고
    • High nucleotide sequences variation in a region of low recombination in Drosophila simulans is consistent with the background selection model
    • Hamblin, M. T., and Aquadro, C. F. (1996) High nucleotide sequences variation in a region of low recombination in Drosophila simulans is consistent with the background selection model. Mol. Biol. Evol. 13, 1133-1140.
    • (1996) Mol. Biol. Evol. , vol.13 , pp. 1133-1140
    • Hamblin, M.T.1    Aquadro, C.F.2
  • 12
    • 0019824131 scopus 로고
    • Correlation between the abundance of Escherichia coli transfer RNAs and the occurrence of the respective codons in its protein genes: A proposal for a synonymous codon choice that is optimal for the E. Coli translation system
    • Ikemura, T. (1981) Correlation between the abundance of Escherichia coli transfer RNAs and the occurrence of the respective codons in its protein genes: a proposal for a synonymous codon choice that is optimal for the E. coli translation system. J. Mol. Biol. 151, 389-409.
    • (1981) J. Mol. Biol. , vol.151 , pp. 389-409
    • Ikemura, T.1
  • 14
    • 0017071682 scopus 로고
    • Relationships within the melanogaster species subgroup of the genus Drosophila (Sophophora). II. Phylogenetic relationships between six species based upon polytene chromosome banding sequences
    • Lemeunier, F. and Ashburner, M. (1976) Relationships within the melanogaster species subgroup of the genus Drosophila (Sophophora). II. Phylogenetic relationships between six species based upon polytene chromosome banding sequences. Proc. R. Soc. Lond. B. Biol. Sci. 193 (1112), 275-294.
    • (1976) Proc. R. Soc. Lond. B. Biol. Sci. , vol.193 , Issue.1112 , pp. 275-294
    • Lemeunier, F.1    Ashburner, M.2
  • 15
    • 0001670506 scopus 로고
    • The melanogaster species group
    • edited by Ashburner, M., Thompson, J. N. Jr., and Carson, H. L. Academic Press, New York
    • Lemeunier F., David, J. R., Tsacas, L., and Ashburner, M. (1986) The melanogaster species group. Vol 3e, pp. 147-256 in The Genetics and Biology of Drosophila, edited by Ashburner, M., Thompson, J. N. Jr., and Carson, H. L. Academic Press, New York.
    • (1986) The Genetics and Biology of Drosophila , vol.3 E , pp. 147-256
    • Lemeunier, F.1    David, J.R.2    Tsacas, L.3    Ashburner, M.4
  • 16
    • 0026053092 scopus 로고
    • Low nucleotide diversity in man
    • Li, W.-H. and Sadler, L. A., (1991) Low nucleotide diversity in man. Genetics 129, 513-523.
    • (1991) Genetics , vol.129 , pp. 513-523
    • Li, W.-H.1    Sadler, L.A.2
  • 18
    • 0019296687 scopus 로고
    • A simple method for estimating evolutionary rate of base substitutions through comparative studies of nucleotide sequences
    • Kimura, M., (1980) A simple method for estimating evolutionary rate of base substitutions through comparative studies of nucleotide sequences. J. Mol. Evol. 16, 111-120.
    • (1980) J. Mol. Evol. , vol.16 , pp. 111-120
    • Kimura, M.1
  • 19
    • 0023261932 scopus 로고
    • Higher rates of nucleotide substitution in Drosophila than in mammals
    • Moriyama, E. (1987) Higher rates of nucleotide substitution in Drosophila than in mammals. Jpn. J. Genet. 62, 139-147.
    • (1987) Jpn. J. Genet. , vol.62 , pp. 139-147
    • Moriyama, E.1
  • 20
    • 0026725308 scopus 로고
    • Rates of synonymous substitution and base composition of nuclear genes in Drosophila
    • Moriyama, E. N. and Gojobori, T. (1992) Rates of synonymous substitution and base composition of nuclear genes in Drosophila. Genetics 130, 855-864.
    • (1992) Genetics , vol.130 , pp. 855-864
    • Moriyama, E.N.1    Gojobori, T.2
  • 21
    • 0030034357 scopus 로고    scopus 로고
    • Intraspecific nuclear DNA variation in Drosophila
    • Moriyama, E. N. and Powell, J. R. (1996) Intraspecific nuclear DNA variation in Drosophila. Mol. Biol. Evol. 13, 261-277.
    • (1996) Mol. Biol. Evol. , vol.13 , pp. 261-277
    • Moriyama, E.N.1    Powell, J.R.2
  • 22
    • 0030845166 scopus 로고    scopus 로고
    • Synonymous substitution rates in Drosophila: Mitochondrial versus nuclear genes
    • Moriyama, E. N. and Powell, J. R. (1997) Synonymous substitution rates in Drosophila: Mitochondrial versus nuclear genes. J. Mol. Evol. 45, 378-391.
    • (1997) J. Mol. Evol. , vol.45 , pp. 378-391
    • Moriyama, E.N.1    Powell, J.R.2
  • 23
    • 0001893214 scopus 로고
    • Extent of protein polymorphism and the neutral mutation theory
    • Nei, M. and Graur, D. (1983) Extent of protein polymorphism and the neutral mutation theory. Evol. Biol. 17, 73-113.
    • (1983) Evol. Biol. , vol.17 , pp. 73-113
    • Nei, M.1    Graur, D.2
  • 24
    • 0022507362 scopus 로고
    • Simple methods for estimating the numbers of synonymous and nonsynonymous nucleotide substitutions
    • Nei, M. and Gojobori, T. (1986) Simple methods for estimating the numbers of synonymous and nonsynonymous nucleotide substitutions. Mol. Biol. Evol. 3, 418-426.
    • (1986) Mol. Biol. Evol. , vol.3 , pp. 418-426
    • Nei, M.1    Gojobori, T.2
  • 27
    • 0022885993 scopus 로고
    • Rates of nucleotide substitution in Drosophila mitochondrial DNA and nuclear DNA are similar
    • Powell, J. R., Caccone, A., Amato, G. D., and Yoon, C. (1986) Rates of nucleotide substitution in Drosophila mitochondrial DNA and nuclear DNA are similar. Proc. Natl. Acad. Sci. USA 83, 9090-9093.
    • (1986) Proc. Natl. Acad. Sci. USA , vol.83 , pp. 9090-9093
    • Powell, J.R.1    Caccone, A.2    Amato, G.D.3    Yoon, C.4
  • 28
    • 0030861159 scopus 로고    scopus 로고
    • Evolution of codon usage bias in Drosophila
    • Powell, J. R. and Moriyama, E. N. (1997) Evolution of codon usage bias in Drosophila. Proc. Natl. Acad. Sci. USA 94, 7784-7790.
    • (1997) Proc. Natl. Acad. Sci. USA , vol.94 , pp. 7784-7790
    • Powell, J.R.1    Moriyama, E.N.2
  • 29
    • 0029178096 scopus 로고
    • An exact test for population differentiation
    • Raymond, M. and Rousset, F. (1995) An exact test for population differentiation. Evolution 49, 1280-1283.
    • (1995) Evolution , vol.49 , pp. 1280-1283
    • Raymond, M.1    Rousset, F.2
  • 30
    • 0028910659 scopus 로고
    • Molecular phylogeny and divergence time of Drosophilid species
    • Russo, C. A., Takezaki, N. and Nei, M. (1995) Molecular phylogeny and divergence time of Drosophilid species. Mol. Biol. Evol. 12, 391-404.
    • (1995) Mol. Biol. Evol. , vol.12 , pp. 391-404
    • Russo, C.A.1    Takezaki, N.2    Nei, M.3
  • 31
    • 0026460082 scopus 로고
    • Population genetics of polymorphism and divergence
    • Sawyer, S. A. and Hartl, D. L. (1992) Population genetics of polymorphism and divergence. Genetics 132, 1161-1176.
    • (1992) Genetics , vol.132 , pp. 1161-1176
    • Sawyer, S.A.1    Hartl, D.L.2
  • 32
    • 0024591558 scopus 로고
    • On the rate of DNA sequence evolution in Drosophila
    • Sharp, P. M. and Li, W.-H. (1989) On the rate of DNA sequence evolution in Drosophila. J. Mol. Evol. 28, 398-402.
    • (1989) J. Mol. Evol. , vol.28 , pp. 398-402
    • Sharp, P.M.1    Li, W.-H.2
  • 34
    • 0024116811 scopus 로고
    • "Silent" sites in Drosophila genes are not neutral: Evidence of selection among synonymous codons
    • Shields, D. C., Sharp, P. M., Higgins, D. G., and Wright, F. (1988) "Silent" sites in Drosophila genes are not neutral: Evidence of selection among synonymous codons. Mol. Biol. Evol. 5, 704-716.
    • (1988) Mol. Biol. Evol. , vol.5 , pp. 704-716
    • Shields, D.C.1    Sharp, P.M.2    Higgins, D.G.3    Wright, F.4
  • 36
    • 0022373615 scopus 로고
    • Phylogenetic analysis of polymorphic DNA sequences at the Adh locus in Drosophila melanogaster and its sibling species
    • Stephens, J. C. and Nei, M. (1985) Phylogenetic analysis of polymorphic DNA sequences at the Adh locus in Drosophila melanogaster and its sibling species. J. Mol. Evol. 22, 289-300.
    • (1985) J. Mol. Evol. , vol.22 , pp. 289-300
    • Stephens, J.C.1    Nei, M.2
  • 37
    • 0030895289 scopus 로고    scopus 로고
    • Evolution of the primate lineage leading to modern humans: Phylogenetic and demographic inferences from DNA sequences
    • Takahata, N. and Satta, Y. (1997) Evolution of the primate lineage leading to modern humans: phylogenetic and demographic inferences from DNA sequences. Proc. Natl. Acad. Sci. USA 94, 4811-4815.
    • (1997) Proc. Natl. Acad. Sci. USA , vol.94 , pp. 4811-4815
    • Takahata, N.1    Satta, Y.2
  • 38
    • 0029415835 scopus 로고
    • Divergence time and population size in the lineage leading to modern humans
    • Takahata, N., Satta, Y. and Klein, J. (1995) Divergence time and population size in the lineage leading to modern humans. Theor. Pop. Biol. 48, 198-221.
    • (1995) Theor. Pop. Biol. , vol.48 , pp. 198-221
    • Takahata, N.1    Satta, Y.2    Klein, J.3
  • 39
    • 0022919117 scopus 로고
    • An attempt to estimate the effective population size of the ancestral species common to two extant species from which homologous genes are sequenced
    • Takahata, N., (1986) An attempt to estimate the effective population size of the ancestral species common to two extant species from which homologous genes are sequenced. Genet. Res. 48, 187-190.
    • (1986) Genet. Res. , vol.48 , pp. 187-190
    • Takahata, N.1
  • 41
    • 0031018637 scopus 로고    scopus 로고
    • Estimating ancestral population parameters
    • Wakely, J. and Hey, J. (1997) Estimating ancestral population parameters. Genetics 145, 847-855.
    • (1997) Genetics , vol.145 , pp. 847-855
    • Wakely, J.1    Hey, J.2
  • 43
    • 0025318864 scopus 로고
    • The 'effective number of codons' used in a gene
    • Wright, F. (1990) The 'effective number of codons' used in a gene. Gene 87, 23-29.
    • (1990) Gene , vol.87 , pp. 23-29
    • Wright, F.1
  • 44
    • 0030741747 scopus 로고    scopus 로고
    • On the estimation of ancestral population sizes of modern humans
    • Yang, Z. (1997) On the estimation of ancestral population sizes of modern humans. Genet. Res. Camb. 69, 111-116.
    • (1997) Genet. Res. Camb. , vol.69 , pp. 111-116
    • Yang, Z.1
  • 45
    • 0018675860 scopus 로고
    • Mutation rates, population size and amounts of electrophoretic variation of enzyme loci in natural populations
    • Zouros, E. (1979) Mutation rates, population size and amounts of electrophoretic variation of enzyme loci in natural populations. Genetics 92, 623-646.
    • (1979) Genetics , vol.92 , pp. 623-646
    • Zouros, E.1


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