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Volumn 48, Issue 3, 1999, Pages 274-283

Estimation of the transition/transversion rate bias and species sampling

Author keywords

Lemurs; Maximum likelihood; Primates; Saturation; Species sampling; Transition transversion rate ratio

Indexed keywords

CYTOCHROME B; DNA;

EID: 0033004740     PISSN: 00222844     EISSN: None     Source Type: Journal    
DOI: 10.1007/PL00006470     Document Type: Article
Times cited : (174)

References (28)
  • 1
    • 0019423856 scopus 로고
    • Sequence and organization of the human mitochondrial genome
    • Anderson SA, Bankier T, Barrell BG, et al. (1981) Sequence and organization of the human mitochondrial genome. Nature 290:457-465
    • (1981) Nature , vol.290 , pp. 457-465
    • Anderson, S.A.1    Bankier, T.2    Barrell, B.G.3
  • 2
    • 0020328686 scopus 로고
    • Mitochondrial DNA sequences of primates, tempo and mode of evolution
    • Brown WM, Prager EM, Wang A, Wilson AC (1982) Mitochondrial DNA sequences of primates, tempo and mode of evolution. J Mol Evol 18:225-239
    • (1982) J Mol Evol , vol.18 , pp. 225-239
    • Brown, W.M.1    Prager, E.M.2    Wang, A.3    Wilson, A.C.4
  • 3
    • 0028837682 scopus 로고
    • Insertions and duplications of mtDNA in the nuclear genomes of old world monkeys and hominoids
    • Collura RV, Stewart C-B (1995) Insertions and duplications of mtDNA in the nuclear genomes of Old World monkeys and hominoids. Nature 378:485-489
    • (1995) Nature , vol.378 , pp. 485-489
    • Collura, R.V.1    Stewart, C.-B.2
  • 4
    • 0021750971 scopus 로고
    • Molecular evolution of chloroplast DNA sequences
    • Curtis SE, Clegg MT (1984) Molecular evolution of chloroplast DNA sequences. Mol Biol Evol 1:291-301
    • (1984) Mol Biol Evol , vol.1 , pp. 291-301
    • Curtis, S.E.1    Clegg, M.T.2
  • 5
    • 0019797407 scopus 로고
    • Evolutionary trees from DNA sequences: A maximum likelihood approach
    • Felsenstein J (1981) Evolutionary trees from DNA sequences: a maximum likelihood approach. J Mol Evol 17:368-376
    • (1981) J Mol Evol , vol.17 , pp. 368-376
    • Felsenstein, J.1
  • 7
    • 0020317308 scopus 로고
    • Patterns of nucleotide substitution in pseudogenes and functional genes
    • Gojobori T, Li W-H, Graur D (1982) Patterns of nucleotide substitution in pseudogenes and functional genes. J Mol Evol 18:360-369
    • (1982) J Mol Evol , vol.18 , pp. 360-369
    • Gojobori, T.1    Li, W.-H.2    Graur, D.3
  • 8
    • 0028168856 scopus 로고
    • A codon-based model of nucleotide substitution for protein-coding DNA sequences
    • Goldman N, Yang Z (1994) A codon-based model of nucleotide substitution for protein-coding DNA sequences. Mol Biol Evol 11: 725-736
    • (1994) Mol Biol Evol , vol.11 , pp. 725-736
    • Goldman, N.1    Yang, Z.2
  • 9
    • 0022376704 scopus 로고
    • Dating the human-ape splitting by a molecular clock of mitochondrial DNA
    • Hasegawa M, Kishino H, Yano T (1985) Dating the human-ape splitting by a molecular clock of mitochondrial DNA. J Mol Evol 22: 160-174
    • (1985) J Mol Evol , vol.22 , pp. 160-174
    • Hasegawa, M.1    Kishino, H.2    Yano, T.3
  • 10
    • 0025074891 scopus 로고
    • Mitochondrial DNA evolution in primates: Transition rate has been extremely low in the lemur
    • Hasegawa M, Kishino H, Hayasaga K, Horai S (1990) Mitochondrial DNA evolution in primates: transition rate has been extremely low in the lemur. J Mol Evol 31:113-121
    • (1990) J Mol Evol , vol.31 , pp. 113-121
    • Hasegawa, M.1    Kishino, H.2    Hayasaga, K.3    Horai, S.4
  • 11
    • 0024120079 scopus 로고
    • Molecular phylogeny and evolution of primate mitochondrial DNA
    • Hayasaga K, Gojobori T, Horai S (1988) Molecular phylogeny and evolution of primate mitochondrial DNA, Mol Biol Evol 5:626-644
    • (1988) Mol Biol Evol , vol.5 , pp. 626-644
    • Hayasaga, K.1    Gojobori, T.2    Horai, S.3
  • 12
    • 0028894410 scopus 로고
    • Recent African origin of modern humans revealed by complete sequences of hominoid mitochondrial DNAs
    • Horai S, Hayasaka K, Kondo R, Tsugane K, Takahata N (1995) Recent African origin of modern humans revealed by complete sequences of hominoid mitochondrial DNAs. Proc Natl Acad Sci USA 92: 532-536
    • (1995) Proc Natl Acad Sci USA , vol.92 , pp. 532-536
    • Horai, S.1    Hayasaka, K.2    Kondo, R.3    Tsugane, K.4    Takahata, N.5
  • 13
    • 0025061094 scopus 로고
    • Limitations of the evolutionary parsimony method of phylogenetic analysis
    • Jin L, Nei M (1990) Limitations of the evolutionary parsimony method of phylogenetic analysis. Mol Biol Evol 7:82-102
    • (1990) Mol Biol Evol , vol.7 , pp. 82-102
    • Jin, L.1    Nei, M.2
  • 14
    • 0023516968 scopus 로고
    • Transitions, transversions, and the molecular clock
    • Jukes TH (1987) Transitions, transversions, and the molecular clock. J Mol Evol 26:87-98
    • (1987) J Mol Evol , vol.26 , pp. 87-98
    • Jukes, T.H.1
  • 15
    • 0019296687 scopus 로고
    • A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences
    • Kimura M (1980) A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences. J Mol Evol 16:111-120
    • (1980) J Mol Evol , vol.16 , pp. 111-120
    • Kimura, M.1
  • 16
    • 0023480940 scopus 로고
    • Evolution of animal mitochondrial DNA: Relevance for population biology and systematics
    • Moritz C, Dowling TE, Brown WM (1987) Evolution of animal mitochondrial DNA: Relevance for population biology and systematics. Annu Rev Ecol Syst 18:269-292
    • (1987) Annu Rev Ecol Syst , vol.18 , pp. 269-292
    • Moritz, C.1    Dowling, T.E.2    Brown, W.M.3
  • 17
    • 0031015213 scopus 로고    scopus 로고
    • Estimating the transition/transversion ratio from independent pairwise comparisons with an assumed phylogeny
    • Purvis A, Bromham L (1997) Estimating the transition/transversion ratio from independent pairwise comparisons with an assumed phylogeny. J Mol Evol 44:112-119
    • (1997) J Mol Evol , vol.44 , pp. 112-119
    • Purvis, A.1    Bromham, L.2
  • 18
    • 0028297534 scopus 로고
    • Substitution rate variation among sites and the estimation of transition bias
    • Wakeley J (1994) Substitution rate variation among sites and the estimation of transition bias. Mol Biol Evol 11:436-442
    • (1994) Mol Biol Evol , vol.11 , pp. 436-442
    • Wakeley, J.1
  • 19
    • 0001062055 scopus 로고    scopus 로고
    • The excess of transitions among nucleotide substitutions: New methods of estimating transition bias underscore its significance
    • Wakeley J (1996) The excess of transitions among nucleotide substitutions: New methods of estimating transition bias underscore its significance. TREE 11:158-163
    • (1996) TREE , vol.11 , pp. 158-163
    • Wakeley, J.1
  • 20
    • 0001480951 scopus 로고
    • When did Eve live? An evolutionary detective story
    • Wills C (1995) When did Eve live? An evolutionary detective story. Evolution 49:593-607
    • (1995) Evolution , vol.49 , pp. 593-607
    • Wills, C.1
  • 21
    • 0028064845 scopus 로고
    • Maximum likelihood phylogenetic estimation from DNA sequences with variable rates over sites: Approximate methods
    • Yang Z (1994) Maximum likelihood phylogenetic estimation from DNA sequences with variable rates over sites: approximate methods. J Mol Evol 39:306-314
    • (1994) J Mol Evol , vol.39 , pp. 306-314
    • Yang, Z.1
  • 22
    • 0029970097 scopus 로고    scopus 로고
    • Maximum likelihood models for combined analyses of multiple sequence data
    • Yang Z (1996) Maximum likelihood models for combined analyses of multiple sequence data. J Mol Evol 42:587-596
    • (1996) J Mol Evol , vol.42 , pp. 587-596
    • Yang, Z.1
  • 24
    • 0028267146 scopus 로고
    • Comparison of models for nucleotide substitution used in maximum likelihood phylogenetic estimation
    • Yang Z, Goldman N, Friday AE (1994) Comparison of models for nucleotide substitution used in maximum likelihood phylogenetic estimation. Mol Biol Evol 11:316-324
    • (1994) Mol Biol Evol , vol.11 , pp. 316-324
    • Yang, Z.1    Goldman, N.2    Friday, A.E.3
  • 25
    • 0031447127 scopus 로고    scopus 로고
    • Back to the future: A synthesis of strepsirrhine systematics
    • Yoder AD (1997) Back to the future: a synthesis of strepsirrhine systematics. Evol Anthropol 6:11-22
    • (1997) Evol Anthropol , vol.6 , pp. 11-22
    • Yoder, A.D.1
  • 26
    • 0032762419 scopus 로고    scopus 로고
    • Phylogeny of the Lemuridae: Effects of taxon and character sampling on resolution of species relationships with Eulemur
    • in press
    • Yoder AD, Irwin JA (1999) Phylogeny of the Lemuridae: Effects of taxon and character sampling on resolution of species relationships with Eulemur. Cladistics (in press)
    • (1999) Cladistics
    • Yoder, A.D.1    Irwin, J.A.2
  • 28
    • 0029954125 scopus 로고    scopus 로고
    • Molecular evolutionary dynamics of cytochrome b in strepsirrhine primates: The phylogenetic significance of third position transversions
    • Yoder AD, Vilgalys R, Ruvolo M (1996b) Molecular evolutionary dynamics of cytochrome b in strepsirrhine primates: The phylogenetic significance of third position transversions. Mol Biol Evol 13:1339-1350
    • (1996) Mol Biol Evol , vol.13 , pp. 1339-1350
    • Yoder, A.D.1    Vilgalys, R.2    Ruvolo, M.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.