Structure of the EMAPII domain of human aminoacyl-tRNA synthetase complex reveals evolutionary dimer mimicry

EMBO Journal

Volumn 20, Issue 3, 2001, Pages 570-578

  Renault, Louis ^a   Kerjan, Pierre ^a   Pasqualato, Sebastiano ^a   Ménétrey, Julie ^a   Robinson, Jean Charles ^a   Kawaguchi, Shin Ichi ^b   Vassylyev, Dmitry G ^b   Yokoyama, Shigeyuki ^b   Mirande, Marc ^a   Cherfils, Jacqueline ^a  

^a LABORATOIRE D ENZYMOLOGIE ET BIOCHIMIE STRUCTURALES   (France)

^b RIKEN HARIMA INSTITUTE   (Japan)

Author keywords

Aminoacyl tRNA synthetase complex; Convergent evolution; Crystal structure; Cytokine; EMAPII

Indexed keywords

AMINO ACID TRANSFER RNA LIGASE;

ARTICLE; COMPLEX FORMATION; CRYSTAL STRUCTURE; EVOLUTION; HUMAN; PRIORITY JOURNAL; RNA BINDING; RNA SYNTHESIS;

AMINO ACID SEQUENCE; AMINO ACYL-TRNA SYNTHETASES; ANIMALS; CYTOKINES; DIMERIZATION; EVOLUTION, MOLECULAR; HUMANS; MODELS, MOLECULAR; MOLECULAR MIMICRY; MOLECULAR SEQUENCE DATA; NEOPLASM PROTEINS; PROTEIN STRUCTURE, QUATERNARY; PROTEIN STRUCTURE, TERTIARY; RNA, TRANSFER; RNA-BINDING PROTEINS; SEQUENCE HOMOLOGY, AMINO ACID;

BACTERIA (MICROORGANISMS);

EID: 17744364688     PISSN: 02614189     EISSN: None     Source Type: Journal    
DOI: 10.1093/emboj/20.3.570     Document Type: Article

References (50)

1. The eIF1A solution structure reveals a large RNA-binding surface important for scanning function
2. The endothelial monocyte-activating polypeptide II (EMAP II) is a substrate for caspase-7
3. The NMR structure of the RNA binding domain of E. coli rho factor suggests possible RNA-protein interactions
4. MAD structure of Pseudomonas nautica dimeric cytochrome c552 mimicks the c4 dihemic cytochrome domain association
5. Crystallography and NMR system: A new software suite for macromolecular structure determination
6. Modification of E. coli methionyl-tRNA synthetase by proteolytic cleavage and properties of the trypsin modified enzyme
7. Yeast tRNA(Asp) recognition by its cognate class II aminoacyl-tRNA synthetase
8. Assembly of a catalytic unit for RNA microhelix aminoacylation using nonspecific RNA binding domains
9. The CCP4 suite: Program for protein crystallography
10. RNA binding strategies of ribosomal proteins
11. The crystal structure of phenylalanyl-tRNA synthetase from Thermus thermophilus complexed with cognate tRNAPhe
12. Multiple sequence alignment with Clustal X
13. Electron-density map interpretation
14. Automatic processing of rotation diffraction data from crystals of initially unknown symmetry and cell content
15. Crystal structure of the dihaem cytochrome c4 from Pseudomonas stutzeri determined at 2.2 Å resolution
16. A recurrent general RNA-binding domain appended to plant methionyl-tRNA synthetase acts as a cis-acting cofactor for aminoacylation
17. Endothelial monocyte-activating polypeptide II. A novel tumor-derived polypeptide that activates host-response mechanisms
18. A peptide derived from the amino terminus of endothelial-monocyte-activating polypeptide II modulates mononuclear and polymorphonuclear leukocyte functions, defines an apparently novel cellular interaction site and induces an acute inflammatory response
19. Characterization of a novel tumor-derived cytokine. Endothelial monocyte activating polypeptide II
20. The crystal structure of the ttCsaA protein: An export-related chaperone from Thermus thermophilus
21. The structure of the Escherichia coli EF-Tu.EF-Ts complex at 2.5 Å resolution
22. A novel anti-tumor cytokine contains an RNA binding motif present in aminoacyl-tRNA synthetases
23. Human tyrosyl tRNA synthetase shares amino acid sequence homology with a putative cytokine
24. Regulation of endothelial monocyte-activating polypeptide II release by apoptosis
25. Functions of isolated domains of methionyl-tRNA synthetase from an extreme thermophile, Thermus thermophilus HB8
26. Molscript: A program to produce both detailed and schematic plots of protein structures
27. A novel tumor-derived mediator that sensitizes cytokine-resistant tumors to tumor necrosis factor
28. Identification of an amino acid region supporting specific methionyl-tRNA synthetase:tRNA recognition
29. Raster3D Version 2.0. A program for photorealistic molecular graphics
30. Aminoacyl-tRNA synthetase family from prokaryotes and eukaryotes: Structural domains and their implications
31. Structure-specific tRNA-binding protein from the extreme thermophile Aquifex aeolicus
32. Structure of phenylalanyl-tRNA synthetase from Thermus thermophilus
33. Interaction of Bacillus subtilis CsaA with SecA and precursor proteins
34. OB (oligonucleotide/oligosaccharide binding)-fold: Common structural and functional solution for non-homologous sequences
35. The three-dimensional structure of the RNA-binding domain of ribosomal protein L2; a protein at the peptidyl transferase center of the ribosome
36. AMoRe: An automated package for molecular replacement
37. Oscillation data reduction program
38. Automated protein model building combined with iterative structure refinement
39. The p43 component of the mammalian multi-synthetase complex is likely to be the precursor of the endothelial monocyte-activating polypeptide II cytokine
40. Macromolecular assemblage of aminoacyl-tRNA synthetases: Identification of protein-protein interactions and characterization of a core protein
41. Aminoacyl-tRNA synthetases: General features and recognition of transfer RNAs
42. SHELX: High resolution refinement
43. The yeast protein Arc1p binds to tRNA and functions as a cofactor for the methionyl- and glutamyl-tRNA synthetases
44. A conserved domain within Arc1p delivers tRNA to aminoacyl-tRNA synthetases
45. Complete genome sequence of Pseudomonas aeruginosa PAO1 and opportunistic pathogen
46. Automated MAD and MIR structure solution
47. Highly differentiated motifs responsible for two cytokine activities of a split human tRNA synthetase
48. Two distinct cytokines released from a human aminoacyl-tRNA synthetase
49. Species barrier to RNA recognition overcome with nonspecific RNA binding domains
50. Crystal structure of the EF-Tu.EF-Ts complex from Thermus thermophilus