-
1
-
-
0029819318
-
The root of the universal tree and the origin of eukaryotes based on elongation factor phylogeny
-
Baldauf S. L., Palmer J. D., Doolittle W. F. The root of the universal tree and the origin of eukaryotes based on elongation factor phylogeny. Proc. Natl. Acad. Sci. USA. 93:1996;7749-7754.
-
(1996)
Proc. Natl. Acad. Sci. USA
, vol.93
, pp. 7749-7754
-
-
Baldauf, S.L.1
Palmer, J.D.2
Doolittle, W.F.3
-
2
-
-
0029832927
-
Perspectives on archaeal diversity, thermophily and monophyly from environmental rRNA sequences
-
Barns S. M., Delwiche C. F., Palmer J. D., Pace N. R. Perspectives on archaeal diversity, thermophily and monophyly from environmental rRNA sequences. Proc. Natl. Acad. Sci. USA. 93:1996;9188-9193.
-
(1996)
Proc. Natl. Acad. Sci. USA
, vol.93
, pp. 9188-9193
-
-
Barns, S.M.1
Delwiche, C.F.2
Palmer, J.D.3
Pace, N.R.4
-
4
-
-
0028941917
-
Root of the universal tree of life based on ancient aminoacyl-tRNA synthetase gene duplications
-
Brown J. R., Doolittle W. F. Root of the universal tree of life based on ancient aminoacyl-tRNA synthetase gene duplications. Proc. Natl. Acad. Sci. USA. 92:1995;2441-2445.
-
(1995)
Proc. Natl. Acad. Sci. USA
, vol.92
, pp. 2441-2445
-
-
Brown, J.R.1
Doolittle, W.F.2
-
5
-
-
0031470387
-
Archaea and the prokaryote-to-eukaryote transition
-
Brown J. R., Doolittle W. F. Archaea and the prokaryote-to-eukaryote transition. Microbiol. Mol. Biol. Rev. 61:1997;456-502.
-
(1997)
Microbiol. Mol. Biol. Rev.
, vol.61
, pp. 456-502
-
-
Brown, J.R.1
Doolittle, W.F.2
-
6
-
-
0030600137
-
The Sulfolobus solfataricus P2 genome project
-
Charlebois R. L., Gaasterland T., Ragan M. A., Doolittle W. F., Sensen C. W. The Sulfolobus solfataricus P2 genome project. FEBS Lett. 389:1996;88-91.
-
(1996)
FEBS Lett.
, vol.389
, pp. 88-91
-
-
Charlebois, R.L.1
Gaasterland, T.2
Ragan, M.A.3
Doolittle, W.F.4
Sensen, C.W.5
-
9
-
-
84959798530
-
Cases in which parsimony or compatibility methods will be positively misleading
-
Felsenstein J. Cases in which parsimony or compatibility methods will be positively misleading. Syst. Zool. 27:1978;401-410.
-
(1978)
Syst. Zool.
, vol.27
, pp. 401-410
-
-
Felsenstein, J.1
-
10
-
-
0030696044
-
Determining divergence times with a protein clock: Update and reevaluation
-
Feng D.-A., Cho G., Doolittle R. F. Determining divergence times with a protein clock: Update and reevaluation. Proc. Natl. Acad. Sci. USA. 94:1997;13028-13033.
-
(1997)
Proc. Natl. Acad. Sci. USA
, vol.94
, pp. 13028-13033
-
-
Feng, D.-A.1
Cho, G.2
Doolittle, R.F.3
-
11
-
-
0028790653
-
Inferring phylogenies from DNA sequences of unequal base compositions
-
Galtier N., Gouy M. Inferring phylogenies from DNA sequences of unequal base compositions. Proc. Natl. Acad. Sci. USA. 92:1995;11317-11321.
-
(1995)
Proc. Natl. Acad. Sci. USA
, vol.92
, pp. 11317-11321
-
-
Galtier, N.1
Gouy, M.2
-
12
-
-
0021003230
-
Estimates of DNA and protein sequence divergence: An examination of some assumptions
-
Golding G. B. Estimates of DNA and protein sequence divergence: An examination of some assumptions. Mol. Biol. Evol. 1:1983;125-142.
-
(1983)
Mol. Biol. Evol.
, vol.1
, pp. 125-142
-
-
Golding, G.B.1
-
13
-
-
0028888465
-
Protein-based phylogenies support a chimeric origin for the eukaryotic genome
-
Golding G. B., Gupta R. S. Protein-based phylogenies support a chimeric origin for the eukaryotic genome. Mol. Biol. Evol. 12:1995;1-6.
-
(1995)
Mol. Biol. Evol.
, vol.12
, pp. 1-6
-
-
Golding, G.B.1
Gupta, R.S.2
-
14
-
-
0024605359
-
Phylogenetic analysis based on rRNA sequences supports the archaebacterial rather than the eocyte tree
-
Gouy M., Li W.-H. Phylogenetic analysis based on rRNA sequences supports the archaebacterial rather than the eocyte tree. Nature. 339:1989;145-147.
-
(1989)
Nature
, vol.339
, pp. 145-147
-
-
Gouy, M.1
Li, W.-H.2
-
15
-
-
0029923838
-
The origin of the eukaryotic cell
-
Gupta R. S., Golding G. B. The origin of the eukaryotic cell. Trends Biol. Sci. 21:1996;166-171.
-
(1996)
Trends Biol. Sci.
, vol.21
, pp. 166-171
-
-
Gupta, R.S.1
Golding, G.B.2
-
16
-
-
0029976676
-
Origin and early evolution of eukaryotes inferred from the amino acid sequences of translation elongation factors 1α/Tu and 2/G
-
Hashimoto T., Hasegawa M. Origin and early evolution of eukaryotes inferred from the amino acid sequences of translation elongation factors 1α/Tu and 2/G. Adv. Biophys. 32:1996;73-120.
-
(1996)
Adv. Biophys.
, vol.32
, pp. 73-120
-
-
Hashimoto, T.1
Hasegawa, M.2
-
17
-
-
0021017159
-
The spatial distribution of fixed mutations within genes coding for proteins
-
Holmquist R., Goodman M., Conroy T., Czelusniak J. The spatial distribution of fixed mutations within genes coding for proteins. J. Mol. Evol. 19:1983;437-448.
-
(1983)
J. Mol. Evol.
, vol.19
, pp. 437-448
-
-
Holmquist, R.1
Goodman, M.2
Conroy, T.3
Czelusniak, J.4
-
18
-
-
0031084114
-
Is the Felsenstein zone a fly trap
-
Huelsenbeck J. P. Is the Felsenstein zone a fly trap. Syst. Biol. 46:1997;69-74.
-
(1997)
Syst. Biol.
, vol.46
, pp. 69-74
-
-
Huelsenbeck, J.P.1
-
19
-
-
0025974053
-
Evolution of RNA polymerases and branching patterns of the three major groups of archaebacteria
-
Iwabe N., Kuma K.-I., Kishino H., Hasegawa M., Miyata T. Evolution of RNA polymerases and branching patterns of the three major groups of archaebacteria. J. Mol. Evol. 32:1991;70-78.
-
(1991)
J. Mol. Evol.
, vol.32
, pp. 70-78
-
-
Iwabe, N.1
Kuma, K.-I.2
Kishino, H.3
Hasegawa, M.4
Miyata, T.5
-
20
-
-
0019296687
-
A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences
-
Kimura M. A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences. J. Mol. Evol. 16:1980;111-120.
-
(1980)
J. Mol. Evol.
, vol.16
, pp. 111-120
-
-
Kimura, M.1
-
21
-
-
0029960344
-
Patterns of nucleotide substitution in mitochondrial protein coding genes of vertebrates
-
Kumar S. Patterns of nucleotide substitution in mitochondrial protein coding genes of vertebrates. Genetics. 143:1996;537-548.
-
(1996)
Genetics
, vol.143
, pp. 537-548
-
-
Kumar, S.1
-
22
-
-
0024285855
-
Origin of the eukaryotic nucleus determined by rate-invariant analysis of rRNA sequences
-
Lake J. A. Origin of the eukaryotic nucleus determined by rate-invariant analysis of rRNA sequences. Nature. 331:1988;184-186.
-
(1988)
Nature
, vol.331
, pp. 184-186
-
-
Lake, J.A.1
-
23
-
-
0025961761
-
Tracing origins with molecular sequences: Metazoan and eukaryotic beginnings
-
Lake J. A. Tracing origins with molecular sequences: Metazoan and eukaryotic beginnings. Trends Biol. Sci. 16:1991;46-50.
-
(1991)
Trends Biol. Sci.
, vol.16
, pp. 46-50
-
-
Lake, J.A.1
-
24
-
-
0029935637
-
Evolution of chlorophyll and bacteriochlorophyll: The problem of invariant sites in sequence analysis
-
Lockhart P. J., Larkum A. W. D., Steel M. A., Waddell P. J., Penny D. Evolution of chlorophyll and bacteriochlorophyll: The problem of invariant sites in sequence analysis. Proc. Natl. Acad. Sci. USA. 93:1996;1930-1934.
-
(1996)
Proc. Natl. Acad. Sci. USA
, vol.93
, pp. 1930-1934
-
-
Lockhart, P.J.1
Larkum, A.W.D.2
Steel, M.A.3
Waddell, P.J.4
Penny, D.5
-
25
-
-
0022507362
-
Simple methods for estimating the numbers of synonymous and nonsynonymous nucleotide substitutions
-
Nei M., Gojobori T. Simple methods for estimating the numbers of synonymous and nonsynonymous nucleotide substitutions. Mol. Biol. Evol. 3:1986;418-426.
-
(1986)
Mol. Biol. Evol.
, vol.3
, pp. 418-426
-
-
Nei, M.1
Gojobori, T.2
-
26
-
-
0024359678
-
Rates of molecular evolution and the fraction of nucleotide positions free to vary
-
Palumbi S. R. Rates of molecular evolution and the fraction of nucleotide positions free to vary. J. Mol. Evol. 29:1989;180-187.
-
(1989)
J. Mol. Evol.
, vol.29
, pp. 180-187
-
-
Palumbi, S.R.1
-
27
-
-
0039985557
-
Archaebacterial DNA-dependent RNA polymerases testify to the evolution of the eukaryotic nuclear genome
-
Pühler G., Leffers H., Gropp F., Palm P., Klenk H.-P., Lottspeich F., Garrett R. A., Zillig W. Archaebacterial DNA-dependent RNA polymerases testify to the evolution of the eukaryotic nuclear genome. Proc. Natl. Acad. Sci. USA. 86:1989;4569-4573.
-
(1989)
Proc. Natl. Acad. Sci. USA
, vol.86
, pp. 4569-4573
-
-
Pühler, G.1
Leffers, H.2
Gropp, F.3
Palm, P.4
Klenk, H.-P.5
Lottspeich, F.6
Garrett, R.A.7
Zillig, W.8
-
28
-
-
0026684272
-
Evidence that eukaryotes and eocyte prokaryotes are immediate relatives
-
Rivera M. C., Lake J. A. Evidence that eukaryotes and eocyte prokaryotes are immediate relatives. Science. 257:1992;74-76.
-
(1992)
Science
, vol.257
, pp. 74-76
-
-
Rivera, M.C.1
Lake, J.A.2
-
29
-
-
0030267461
-
A chimeric origin for eukaryotes re-examined
-
Roger A. J., Brown J. R. A chimeric origin for eukaryotes re-examined. Trends Biol. Sci. 21:1996;370-371.
-
(1996)
Trends Biol. Sci.
, vol.21
, pp. 370-371
-
-
Roger, A.J.1
Brown, J.R.2
-
30
-
-
0029091043
-
Estimating substitution rates in ribosomal RNA genes
-
Rzhetsky A. Estimating substitution rates in ribosomal RNA genes. Genetics. 141:1995;771-783.
-
(1995)
Genetics
, vol.141
, pp. 771-783
-
-
Rzhetsky, A.1
-
31
-
-
0023375195
-
The Neighbor-Joining method: A new method for reconstructing phylogenetic trees
-
Saitou N., Nei M. The Neighbor-Joining method: A new method for reconstructing phylogenetic trees. Mol. Biol. Evol. 4:1987;406-425.
-
(1987)
Mol. Biol. Evol.
, vol.4
, pp. 406-425
-
-
Saitou, N.1
Nei, M.2
-
32
-
-
0024661142
-
Evidence from nuclear sequences that invariable sites should be considered when sequence divergence is calculated
-
Shoemaker J. S., Fitch W. M. Evidence from nuclear sequences that invariable sites should be considered when sequence divergence is calculated. Mol. Biol. Evol. 6:1989;270-289.
-
(1989)
Mol. Biol. Evol.
, vol.6
, pp. 270-289
-
-
Shoemaker, J.S.1
Fitch, W.M.2
-
34
-
-
0024114801
-
A note on the Neighbor-Joining algorithm of Saitou and Nei
-
Studier J. A., Keppler K. J. A note on the Neighbor-Joining algorithm of Saitou and Nei. Mol. Biol. Evol. 5:1988;729-731.
-
(1988)
Mol. Biol. Evol.
, vol.5
, pp. 729-731
-
-
Studier, J.A.1
Keppler, K.J.2
-
35
-
-
0028205953
-
Relative efficiencies of the Maximum-Likelihood, Neighbor-Joining and Maximum Parsimony methods when substitution rates varies with site
-
Tateno Y., Takezaki N., Nei M. Relative efficiencies of the Maximum-Likelihood, Neighbor-Joining and Maximum Parsimony methods when substitution rates varies with site. Mol. Biol. Evol. 11:1994;261-277.
-
(1994)
Mol. Biol. Evol.
, vol.11
, pp. 261-277
-
-
Tateno, Y.1
Takezaki, N.2
Nei, M.3
-
36
-
-
0027968068
-
CLUSTAL W: Improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice
-
Thompson J. D., Higgins D. G., Gibson T. J. CLUSTAL W: Improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res. 22:1994;4673-4680.
-
(1994)
Nucleic Acids Res.
, vol.22
, pp. 4673-4680
-
-
Thompson, J.D.1
Higgins, D.G.2
Gibson, T.J.3
-
37
-
-
0031046929
-
Evolutionary distances between nucleotide sequences based on the distribution of substitution rates among sites as estimated by parsimony
-
Tourasse N. J., Gouy M. Evolutionary distances between nucleotide sequences based on the distribution of substitution rates among sites as estimated by parsimony. Mol. Biol. Evol. 14:1997;287-298.
-
(1997)
Mol. Biol. Evol.
, vol.14
, pp. 287-298
-
-
Tourasse, N.J.1
Gouy, M.2
-
38
-
-
0002395520
-
Evolutionary relationships among protist phyla constructed from LSU rRNAs accounting for unequal rates of substitution among sites
-
Coombs London: Kluwer Academic
-
Tourasse N. J., Gouy M. Evolutionary relationships among protist phyla constructed from LSU rRNAs accounting for unequal rates of substitution among sites. Coombs. Evolutionary Relationships among Protozoa. 1998;57-75 Kluwer Academic, London.
-
(1998)
Evolutionary Relationships among Protozoa
, pp. 57-75
-
-
Tourasse, N.J.1
Gouy, M.2
-
39
-
-
0015219691
-
Fitting discrete probability distributions to evolutionary events
-
Uzzell T., Corbin K. W. Fitting discrete probability distributions to evolutionary events. Science. 172:1971;1089-1096.
-
(1971)
Science
, vol.172
, pp. 1089-1096
-
-
Uzzell, T.1
Corbin, K.W.2
-
41
-
-
0029798360
-
Substitution rate calibration of small subunit ribosomal RNA identifies chlorarachniophyte endosymbionts as remnants of green algae
-
Van de Peer Y., Rensing S. A., Maier U.-G., De Wachter R. Substitution rate calibration of small subunit ribosomal RNA identifies chlorarachniophyte endosymbionts as remnants of green algae. Proc. Natl. Acad. Sci. USA. 93:1996b;7732-7736.
-
(1996)
Proc. Natl. Acad. Sci. USA
, vol.93
, pp. 7732-7736
-
-
Van De Peer, Y.1
Rensing, S.A.2
Maier, U.-G.3
De Wachter, R.4
-
42
-
-
0029989451
-
The evolution of stramenopiles and alveolates as derived by "substitution rate calibration" of small ribosomal subunit RNA
-
Van de Peer Y., Van der Auwera G., De Wachter R. The evolution of stramenopiles and alveolates as derived by "substitution rate calibration" of small ribosomal subunit RNA. J. Mol. Evol. 42:1996c;201-210.
-
(1996)
J. Mol. Evol.
, vol.42
, pp. 201-210
-
-
Van De Peer, Y.1
Van Der Auwera, G.2
De Wachter, R.3
-
43
-
-
0023184331
-
Bacterial evolution
-
Woese C. R. Bacterial evolution. Microbiol. Rev. 51:1987;221-271.
-
(1987)
Microbiol. Rev.
, vol.51
, pp. 221-271
-
-
Woese, C.R.1
-
44
-
-
0025300402
-
Towards defining a natural system of organisms: Proposal for the domains Archaea, Bacteria, and Eucarya
-
Woese C. R., Kandler O., Wheelis M. L. Towards defining a natural system of organisms: Proposal for the domains Archaea, Bacteria, and Eucarya. Proc. Natl. Acad. Sci. USA. 87:1990;4576-4579.
-
(1990)
Proc. Natl. Acad. Sci. USA
, vol.87
, pp. 4576-4579
-
-
Woese, C.R.1
Kandler, O.2
Wheelis, M.L.3
-
45
-
-
0007553324
-
PAML: Phylogenetic Analysis by Maximum Likelihood
-
The Pennsylvania State Univ. University Park, version 1.1.
-
Yang, Z. 1995, PAML: Phylogenetic Analysis by Maximum Likelihood, Instit. of Mol. Evol. Genetics, The Pennsylvania State Univ. University Park, version 1.1.
-
(1995)
Instit. of Mol. Evol. Genetics
-
-
Yang, Z.1
-
46
-
-
0030451420
-
Among-site rate variation and its impact on phylogenetic analyses
-
Yang Z. Among-site rate variation and its impact on phylogenetic analyses. Trends Ecol. Evol. 11:1996;367-372.
-
(1996)
Trends Ecol. Evol.
, vol.11
, pp. 367-372
-
-
Yang, Z.1
-
47
-
-
0030638573
-
How often do wrong models produce better phylogenies
-
Yang Z. How often do wrong models produce better phylogenies. Mol. Biol. Evol. 14:1997;105-108.
-
(1997)
Mol. Biol. Evol.
, vol.14
, pp. 105-108
-
-
Yang, Z.1
|