Fluorescence resonance energy transfer (FRET) and competing processes in donor-acceptor substituted DNA strands: A comparative study of ensemble and single-molecule data

Reviews in Molecular Biotechnology

Volumn 82, Issue 3, 2002, Pages 211-231

  Dietrich, Anja ^a   Buschmann, Volker ^a   Müller, Christian ^a   Sauer, Markus ^a  

^a UNIVERSITY OF HEIDELBERG   (Germany)

Author keywords

DNA mediated electron transfer; Fluorescence resonance energy transfer (FRET); Single molecule spectroscopy

Indexed keywords

5 CARBOXYRHODAMINE 6G; 5 CARBOXYTETRAMETHYLRHODAMINE; 5-CARBOXYRHODAMINE-6G; 5-CARBOXYTETRAMETHYLRHODAMINE; CARBOCYANINE; CYANINE DYE 3; CYANINE DYE 5; DNA; RHODAMINE;

CHEMISTRY; ENERGY TRANSFER; FLUORESCENCE POLARIZATION; INSTRUMENTATION; REVIEW; SPECTROFLUOROMETRY;

CARBOCYANINES; DNA; ENERGY TRANSFER; FLUORESCENCE POLARIZATION; RHODAMINES; SPECTROMETRY, FLUORESCENCE;

EID: 0036180593     PISSN: 13890352     EISSN: None     Source Type: Journal    
DOI: 10.1016/S1389-0352(01)00039-3     Document Type: Article

References (80)

1. Imaging three-dimensional single molecule orientations
2. Long-range charge hopping in DNA
3. Entropic elasticity of lambda-phage DNA
4. Observing the helical geometry of double-stranded DNA in solution by fluorescence resonance energy transfer
5. Ratiometric identification and separation of single molecules diffusing in solution
6. The orientational freedom of molecular probes
7. Single-pair fluorescence energy transfer on freely diffusing molecules: Observation of Förster distance dependence and subpopulations
8. Single-molecule protein folding: Diffusion fluorescence energy transfer studies of the denaturation of chymotrypsin inhibitor 2
9. A theory of sensitized luminescence in solids
10. Conformational transitions monitored for single molecules in solution
11. Monitoring conformational dynamics of a single molecule by selective fluorescence spectroscopy
12. Semiconductivity of organic substances
13. Single-molecule spectroscopy in oxygen-depleted polymer films
14. Probing photoinduced intersystem crossing by two-color, double resonance single molecule spectroscopy
15. Zwischenmolekulare energiewanderung und fluoreszenz
16. Intramolecular photoinduced electron transfer to anthraquinones linked to duplex DNA: The effect of gaps and traps on long-range radical migration
17. Monitoring the conformational fluctuations of DNA hairpins using single-pair fluorescence resonance energy transfer
18. Probing the interaction between two single molecules: Fluorescence resonance energy transfer between a single donor and a single acceptor
19. Single molecule rotational and translational diffusion observed by near-field scanning optical microscopy
20. Single-molecule fluorescence spectroscopy of enzyme conformational dynamics and cleavage mechanism
21. Ligand-induced conformational changes observed in single RNA molecules
22. Fluorescence resonance energy transfer between single fluorophores attached to a coiled-coil protein in aqueous solution
23. Nonexponential kinetics of a single tRNAPhe molecules under physiological conditions
24. Folding dynamics of single GCN4 peptides by fluorescence resonant energy transfer confocal microscopy
25. Charge transfer and transport in DNA
26. Electron transfer between bases in double helical DNA
27. Fluorescence decays and spectral properties of rhodamine B in submono-, mono- and multilayer systems
28. Probes for detection of specific DNA sequences at the single-molecule level
29. Long-ranged electron interaction between carboxytetramethylrhodamine and fluoresceinisothiocyanate bound covalently to DNA, as evidenced by fluorescence quenching
30. Distance-dependent electron transfer in DNA hairpins
31. Dynamics of photoinduced charge transfer and hole transport in synthetic DNA hairpins
32. Exciton interactions in nonconjugated squaraine dimers. Mechanisms for coupling and consequences for photophysics and photochemistry
33. Multiplex dye DNA sequencing in capillary gel electrophoresis (CGE) with diode laser based time-resolved fluorescence detection
34. Single-molecule spectral fluctuations at room temperature
35. Sequence dependent long range hole transport in DNA
36. Ground and excited state reactions of new red fluorescent dyes and the DNA base guanosine
37. Location of cyanine-3 on double-stranded DNA: Importance for fluorescence resonance energy transfer studies
38. Probing DNA surface attachment and local environment using single molecule spectroscopy
39. Simultaneous binding and bending of promoter DNA by the TATA binding protein: Real time kinetic measurements
40. Single molecule rotational and translational diffusion observed by near-field scanning optical microscopy
41. New fluorescent dyes in the red region for biodiagnostics
42. Dynamics of electron-transfer reactions between xanthene dyes and DNA nucleotides monitored on the single molecule level
43. Long-range charge transfer in DNA: Transient structural distortions control the distance dependence
44. The renaissance of fluorescence resonance energy transfer
45. Nucleobase-specific quenching of fluorescent dyes. 1. Nucleobase one-electron redox potentials and their correlation with static and dynamic quenching efficiencies
46. Photophysics and mechanisms of intramolecular electronic energy transfer in bichromophoric molecular systems: Solution and supersonic jet studies
47. How easily oxidizable is DNA? One-electron reduction potentials of adenosine and guanosine radicals in aqueous solution
48. Energy transfer: A spectroscopic ruler
49. Fluorescence energy transfer as a spectroscopic ruler
50. Global structure of three-way DNA junctions with and without additional unpaired bases: A fluorescence resonance energy transfer analysis
51. Application of fluorescence resonance energy transfer in the clinical laboratory: Routine and research
52. Photoinduced electron transfer on an oligodeoxynucleotide duplex: Observation of the electron-transfer intermediate
53. Confocal fluorescence lifetime imaging microscopy (FLIM) at the single molecule level
54. Photophysical dynamics of single dye molecules studied by spectrally-resolved fluorescence lifetime imaging microscopy
55. The green fluorescent protein
56. A three-dimensional model for the hammerhead ribozyme based on fluorescence measurements
57. Fluorescence characteristics of 5-carboxytetramethylrhodamine linked covalently to the 5′ end of oligonucleotide: Multiple conformers of single-stranded and double-stranded dye-DNA complexes
58. The dimeric nature of gramicidin A transmembrane channel: Conductance and fluorescence energy transfer studies of hybrid channels
59. Time-varying triplet state lifetimes of single molecules
60. Structural relaxation of rhodamine dyes with different n-substitution patterns: A study of fluorescence decay times and quantum yields
61. Fluorescence spectroscopy of single biomolecules
62. Measuring conformational dynamics of biomolecules by single molecule fluorescence spectroscopy
63. Photoinduced electron transfer in solution: Exciplex and radical ion formation free enthalpies and their solvent dependence
64. Conformational fluctuations in single DNA molecules
65. Millisecond intensity fluctuations of single molecules at room temperature
66. Single-molecule detection fluorescence of surface-bound species in vacuum
67. Orientation imaging and reorientation dynamics of single dye molecules
68. Charge transfer and stacking reactions between Rh6G and dGTP in water - A fluorescence correlation spectroscopy study
69. Characterization of photoinduced isomerization and back-isomerization of the cyanine dye Cy5 by fluorescence correlation spectroscopy
70. Two new concepts to measure fluorescence resonance energy transfer via fluorescence correlation spectroscopy - Theory and experimental realizations
71. Electronic structures and long-range electron transfer through DNA molecules
72. Ratiometric analysis of single-molecule fluorescence resonance energy transfer using logical combinations of threshold criteria: A study of 12-mer DNA
73. Classifying the photophysical dynamics of single- and multiple-chromophoric molecules by single molecule spectroscopy